DK951918 |
Clone id |
TST38A01NGRL0012_K24 |
Library |
TST38 |
Length |
625 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0012_K24. 5' end sequence. |
Accession |
DK951918 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL3574Contig1 |
Sequence |
CCTTCTCCCCCTTTGAGCAAACGGTCTCAGACAGGATCTCCAACAGATTCAAGGAAAGGA AGTGTCTCTCCACCTGTGAAACGTTACAGACCAAGATCACGACCTACCTCTGAGCAATCT TTGTCCAGAGAAGCAACAAGGAGCCGTTCTGTCATCAGTGGGAGTGCTAATGTAAGCCCT GCAAGAAGCAGCAGCAGCAGTGAGAGCCAGGAAAAATCTTCAAGCGACCATATAGTAGAG AAATCTCCTCTTACGGAGTTAAGCGAAGAAACAGGCAGGAATCAAACTGCTTTCCGTCTC AAGAGGACAAATGAAGGATCGAGTGCTGCACGACAGGGAGGAAGAGCGTCATCTAGCTCT CCCTCAAGGTCTCGTTCAGTCTCAGTTGATGATGACAAGTATACAAATGCTTCGAAAAAA GCCAGTGTCAAGGAGCGTCATGAAATCCCTGAAGCGGGTTCCTCAGAGAATCATGATGAC ATACTGGCTTTACCTGGGAAGAATTTTGCGTCAGAAGCAGAAGATTCTGAGTTTAGGAAA AATTATTCTGGTCATGGACGCAGGCTCAGAAAGCAGACACGAAGCTCTGATGCCATCTCT GGTGATGATAGCCAAAGTGAGGAAT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q52KI8 |
Definition |
sp|Q52KI8|SRRM1_MOUSE Serine/arginine repetitive matrix protein 1 OS=Mus musculus |
Align length |
51 |
Score (bit) |
35.4 |
E-value |
0.24 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK951918|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0012_K24, 5' (625 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q52KI8|SRRM1_MOUSE Serine/arginine repetitive matrix protein ... 35 0.24 sp|Q5R5Q2|SRRM1_PONAB Serine/arginine repetitive matrix protein ... 35 0.31 sp|Q8IYB3|SRRM1_HUMAN Serine/arginine repetitive matrix protein ... 35 0.31 sp|Q10021|RSP5_CAEEL Probable splicing factor, arginine/serine-r... 34 0.70 sp|Q8CGZ0|CHERP_MOUSE Calcium homeostasis endoplasmic reticulum ... 34 0.70 sp|Q8BTI8|SRRM2_MOUSE Serine/arginine repetitive matrix protein ... 33 0.92 sp|O14513|NAP5_HUMAN Nck-associated protein 5 OS=Homo sapiens GN... 33 0.92 sp|Q7RYH7|CWC21_NEUCR Pre-mRNA-splicing factor cwc-21 OS=Neurosp... 32 2.0 sp|Q9K998|DCTR_BACHD Probable C4-dicarboxylate response regulato... 32 2.6 sp|A1A5I1|F133_DANRE Protein FAM133 OS=Danio rerio GN=fam133 PE=... 32 2.7 sp|Q5UQ16|YL201_MIMIV Uncharacterized protein L201 OS=Acanthamoe... 32 3.5 sp|P23201|SPA2_YEAST Protein SPA2 OS=Saccharomyces cerevisiae GN... 32 3.5 sp|Q8IWX8|CHERP_HUMAN Calcium homeostasis endoplasmic reticulum ... 32 3.5 sp|Q4JWV5|TIG_CORJK Trigger factor OS=Corynebacterium jeikeium (... 31 4.5 sp|P03203|EBNA4_EBV Epstein-Barr nuclear antigen 4 OS=Epstein-Ba... 31 4.5 sp|O35986|ZRAB2_RAT Zinc finger Ran-binding domain-containing pr... 31 5.9 sp|Q9R020|ZRAB2_MOUSE Zinc finger Ran-binding domain-containing ... 31 5.9 sp|Q13875|MOBP_HUMAN Myelin-associated oligodendrocyte basic pro... 31 5.9 sp|P18899|DDR48_YEAST Stress protein DDR48 OS=Saccharomyces cere... 31 5.9 sp|Q7RX84|CWC22_NEUCR Pre-mRNA-splicing factor cwc-22 OS=Neurosp... 31 5.9 sp|Q9VJ87|NCM_DROME Nucampholin OS=Drosophila melanogaster GN=nc... 30 7.7 sp|Q0JD07|C3H28_ORYSJ Zinc finger CCCH domain-containing protein... 30 7.7
>sp|Q52KI8|SRRM1_MOUSE Serine/arginine repetitive matrix protein 1 OS=Mus musculus GN=Srrm1 PE=1 SV=1 Length = 946
Score = 35.4 bits (80), Expect = 0.24 Identities = 19/51 (37%), Positives = 27/51 (52%) Frame = +1
Query: 1 PSPPLSKRSQTGSPTDSRKGSVSPPVKRYRPRSRPTSEQSLSREATRSRSV 153 PSPP +R+ + P R+ S SPP KR S P ++S + RS S+ Sbjct: 625 PSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPTVTKRRSPSL 675
>sp|Q5R5Q2|SRRM1_PONAB Serine/arginine repetitive matrix protein 1 OS=Pongo abelii GN=SRRM1 PE=2 SV=1 Length = 917
Score = 35.0 bits (79), Expect = 0.31 Identities = 19/51 (37%), Positives = 26/51 (50%) Frame = +1
Query: 1 PSPPLSKRSQTGSPTDSRKGSVSPPVKRYRPRSRPTSEQSLSREATRSRSV 153 PSPP +R+ + P R+ S SPP KR S P ++S RS S+ Sbjct: 620 PSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSL 670
>sp|Q8IYB3|SRRM1_HUMAN Serine/arginine repetitive matrix protein 1 OS=Homo sapiens GN=SRRM1 PE=1 SV=2 Length = 904
Score = 35.0 bits (79), Expect = 0.31 Identities = 19/51 (37%), Positives = 26/51 (50%) Frame = +1
Query: 1 PSPPLSKRSQTGSPTDSRKGSVSPPVKRYRPRSRPTSEQSLSREATRSRSV 153 PSPP +R+ + P R+ S SPP KR S P ++S RS S+ Sbjct: 606 PSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSL 656
>sp|Q10021|RSP5_CAEEL Probable splicing factor, arginine/serine-rich 5 OS=Caenorhabditis elegans GN=rsp-5 PE=2 SV=3 Length = 208
Score = 33.9 bits (76), Expect = 0.70 Identities = 20/47 (42%), Positives = 29/47 (61%) Frame = +1
Query: 16 SKRSQTGSPTDSRKGSVSPPVKRYRPRSRPTSEQSLSREATRSRSVI 156 S R ++ SP R+ S +PP +R R R R S +S SR ++RSRS + Sbjct: 86 SPRRRSRSP---RRRSRTPPRRRSRSRDRKRSRRSRSRSSSRSRSPV 129
>sp|Q8CGZ0|CHERP_MOUSE Calcium homeostasis endoplasmic reticulum protein OS=Mus musculus GN=Cherp PE=1 SV=1 Length = 936
Score = 33.9 bits (76), Expect = 0.70 Identities = 21/45 (46%), Positives = 26/45 (57%) Frame = +1
Query: 16 SKRSQTGSPTDSRKGSVSPPVKRYRPRSRPTSEQSLSREATRSRS 150 SK S++ S + SR S S R R RSR S +S SR +RSRS Sbjct: 767 SKSSRSSSRSHSRSRSRSSSRSRSRSRSRSRSSRSRSRSRSRSRS 811
>sp|Q8BTI8|SRRM2_MOUSE Serine/arginine repetitive matrix protein 2 OS=Mus musculus GN=Srrm2 PE=1 SV=2 Length = 2703
Score = 33.5 bits (75), Expect = 0.92 Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 6/55 (10%) Frame = +1
Query: 4 SPPLSKR-SQTGSPTDSRKGSVSPPVKRYRPRSRP---TSEQSLSREA--TRSRS 150 +PP+++R S++ +PT R S +PPV R R RSR T +S SR + TR RS Sbjct: 1880 TPPVTRRRSRSRTPTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPVTRRRS 1934
Score = 31.2 bits (69), Expect = 4.5 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 5/55 (9%) Frame = +1
Query: 1 PSPPLSKRSQTGSPTDSRKGSVSPPVKRYRPRSR--PTS---EQSLSREATRSRS 150 P+P RS+ T R S++P + R R RSR P S +S++R +RSR+ Sbjct: 1814 PAPWKRSRSRASPATHRRSRSITPLISRRRSRSRTSPVSRRRSRSVNRRRSRSRA 1868
>sp|O14513|NAP5_HUMAN Nck-associated protein 5 OS=Homo sapiens GN=NAP5 PE=1 SV=2 Length = 1909
Score = 33.5 bits (75), Expect = 0.92 Identities = 16/58 (27%), Positives = 32/58 (55%) Frame = +2
Query: 299 SRGQMKDRVLHDREEERHLALPQGLVQSQLMMTSIQMLRKKPVSRSVMKSLKRVPQRI 472 S G M ++++H+ EEERHL L + +L +++ R + RS+ + R+ + + Sbjct: 65 SEGAMHEKLIHELEEERHLRLQS---EKRLQEVTLESERNRIQMRSLQQQFSRMEETV 119
>sp|Q7RYH7|CWC21_NEUCR Pre-mRNA-splicing factor cwc-21 OS=Neurospora crassa GN=cwc-21 PE=3 SV=1 Length = 344
Score = 32.3 bits (72), Expect = 2.0 Identities = 21/43 (48%), Positives = 26/43 (60%) Frame = +1
Query: 22 RSQTGSPTDSRKGSVSPPVKRYRPRSRPTSEQSLSREATRSRS 150 RS++ SP R + SP R RS P SE+SLSR +RSRS Sbjct: 255 RSRSRSPIRERSRTRSPVRDTGRSRS-PVSERSLSRSRSRSRS 296
>sp|Q9K998|DCTR_BACHD Probable C4-dicarboxylate response regulator dctR OS=Bacillus halodurans GN=dctR PE=3 SV=1 Length = 230
Score = 32.0 bits (71), Expect = 2.6 Identities = 18/37 (48%), Positives = 21/37 (56%) Frame = -3
Query: 149 ERLLVASLDKDCSEVGRDLGL*RFTGGETLPFLESVG 39 ERL K E+GRD+GL R T L +LESVG Sbjct: 171 ERLEELDEPKSAEEIGRDVGLARVTVRRYLNYLESVG 207
>sp|A1A5I1|F133_DANRE Protein FAM133 OS=Danio rerio GN=fam133 PE=2 SV=2 Length = 259
Score = 32.0 bits (71), Expect = 2.7 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 2/80 (2%) Frame = +1
Query: 388 DDDKYTNASKKASVKE--RHEIPEAGSSENHDDILALPGKNFASEAEDSEFRKNYSGHGR 561 D +K KK K+ RH + SS + D + +S+AED + +KN + Sbjct: 94 DKEKEKKEKKKKEKKKSSRHSSSSSSSSSSSDS-----SSSSSSDAEDDDEKKNLKKKKK 148
Query: 562 RLRKQTRSSDAISGDDSQSE 621 R R TR A DS+SE Sbjct: 149 RKRSSTRK--ASDETDSESE 166
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B4QIY9 |
Definition |
tr|B4QIY9|B4QIY9_DROSI GD14425 OS=Drosophila simulans |
Align length |
53 |
Score (bit) |
38.5 |
E-value |
0.33 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK951918|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0012_K24, 5' (625 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B4QIY9|B4QIY9_DROSI GD14425 OS=Drosophila simulans GN=GD14425... 39 0.33 tr|Q177D1|Q177D1_AEDAE Putative uncharacterized protein OS=Aedes... 36 1.6 tr|B4HGN9|B4HGN9_DROSE GM25393 OS=Drosophila sechellia GN=GM2539... 36 1.6 tr|B4ME13|B4ME13_DROVI GJ17686 OS=Drosophila virilis GN=GJ17686 ... 36 2.1 tr|A7T602|A7T602_NEMVE Predicted protein (Fragment) OS=Nematoste... 36 2.1 tr|A2A8W1|A2A8W1_MOUSE Serine/arginine repetitive matrix 1 (Frag... 35 2.8 tr|A2A8V9|A2A8V9_MOUSE Serine/arginine repetitive matrix 1 OS=Mu... 35 2.8 tr|A2A8V8|A2A8V8_MOUSE Serine/arginine repetitive matrix 1 OS=Mu... 35 2.8 tr|Q9VU43|Q9VU43_DROME SRm160 OS=Drosophila melanogaster GN=SRm1... 35 2.8 tr|Q6AWQ1|Q6AWQ1_DROME RE71183p OS=Drosophila melanogaster GN=SR... 35 2.8 tr|Q4YT14|Q4YT14_PLABE Putative uncharacterized protein OS=Plasm... 35 2.8 tr|Q4YIJ4|Q4YIJ4_PLABE Putative uncharacterized protein OS=Plasm... 35 2.8 tr|A7RKB9|A7RKB9_NEMVE Predicted protein OS=Nematostella vectens... 35 2.8 tr|Q6DK77|Q6DK77_XENTR Serine/arginine repetitive matrix 1 OS=Xe... 35 3.7 tr|Q28CC2|Q28CC2_XENTR Serine/arginine repetitive matrix 1 (Frag... 35 3.7 tr|B6KE52|B6KE52_TOXGO Putative uncharacterized protein OS=Toxop... 35 3.7 tr|B7Z7U0|B7Z7U0_HUMAN cDNA FLJ61739, highly similar to Serine/a... 35 3.7 tr|A9Z1X7|A9Z1X7_HUMAN Serine/arginine repetitive matrix 1 OS=Ho... 35 3.7 tr|B2RYB3|B2RYB3_RAT Srrm1 protein OS=Rattus norvegicus GN=Srrm1... 35 4.8 tr|A5BEP5|A5BEP5_VITVI Putative uncharacterized protein OS=Vitis... 35 4.8 tr|Q22M71|Q22M71_TETTH Putative uncharacterized protein OS=Tetra... 35 4.8 tr|B5XAU0|B5XAU0_SALSA Splicing factor, arginine/serine-rich 3 O... 34 6.2 tr|Q9ZW08|Q9ZW08_ARATH Putative proline-rich protein OS=Arabidop... 34 6.2 tr|Q9FYB2|Q9FYB2_ARATH SRM102 OS=Arabidopsis thaliana GN=srm102 ... 34 6.2 tr|Q8L7W3|Q8L7W3_ARATH At2g29210/F16P2.41 OS=Arabidopsis thalian... 34 6.2 tr|B2BXT6|B2BXT6_9BRAS Proline-rich protein OS=Boechera divarica... 34 6.2 tr|A8P960|A8P960_COPC7 Predicted protein OS=Coprinopsis cinerea ... 34 6.2 tr|B0W5Y1|B0W5Y1_CULQU Putative uncharacterized protein OS=Culex... 34 8.1 tr|A8Y0A7|A8Y0A7_CAEBR Putative uncharacterized protein OS=Caeno... 34 8.1 tr|B6QVS2|B6QVS2_PENMA Nucleolin protein Nsr1, putative OS=Penic... 34 8.1
>tr|B4QIY9|B4QIY9_DROSI GD14425 OS=Drosophila simulans GN=GD14425 PE=4 SV=1 Length = 954
Score = 38.5 bits (88), Expect = 0.33 Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 3/53 (5%) Frame = +1
Query: 1 PSPPLSKRSQTGSPT---DSRKGSVSPPVKRYRPRSRPTSEQSLSREATRSRS 150 P P ++RS +GS R+ S SPPVKR RS + +SLSR+ +RSRS Sbjct: 558 PPPARNRRSSSGSSAGGRQQRQRSASPPVKR---RSSHSRSRSLSRQRSRSRS 607
>tr|Q177D1|Q177D1_AEDAE Putative uncharacterized protein OS=Aedes aegypti GN=AAEL006172 PE=4 SV=1 Length = 678
Score = 36.2 bits (82), Expect = 1.6 Identities = 23/49 (46%), Positives = 29/49 (59%) Frame = +1
Query: 4 SPPLSKRSQTGSPTDSRKGSVSPPVKRYRPRSRPTSEQSLSREATRSRS 150 SP S+RS++GSP SR GS SP + RSR S+ S +RSRS Sbjct: 90 SPAGSQRSRSGSPR-SRSGSKSPAGSQRSGRSRSRSQASAGSAKSRSRS 137
>tr|B4HGN9|B4HGN9_DROSE GM25393 OS=Drosophila sechellia GN=GM25393 PE=4 SV=1 Length = 946
Score = 36.2 bits (82), Expect = 1.6 Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 3/53 (5%) Frame = +1
Query: 1 PSPPLSKRSQTGSPT---DSRKGSVSPPVKRYRPRSRPTSEQSLSREATRSRS 150 P P ++RS +GS R+ S SPP KR RS + +SLSR+ +RSRS Sbjct: 558 PPPARNRRSSSGSSAGGRQQRQRSASPPEKR---RSSHSRSRSLSRQRSRSRS 607
>tr|B4ME13|B4ME13_DROVI GJ17686 OS=Drosophila virilis GN=GJ17686 PE=4 SV=1 Length = 1107
Score = 35.8 bits (81), Expect = 2.1 Identities = 20/68 (29%), Positives = 32/68 (47%) Frame = +1
Query: 385 VDDDKYTNASKKASVKERHEIPEAGSSENHDDILALPGKNFASEAEDSEFRKNYSGHGRR 564 +D+D N K+AS E G S H LPG +F+S ++S+ +G Sbjct: 1027 LDNDSAGNTPKRASSMSEDETLTNGLSHGHSLKRRLPGSSFSSNGDESDNPLETTGGSNS 1086
Query: 565 LRKQTRSS 588 + K+ RS+ Sbjct: 1087 IEKRPRSN 1094
>tr|A7T602|A7T602_NEMVE Predicted protein (Fragment) OS=Nematostella vectensis GN=v1g222798 PE=4 SV=1 Length = 620
Score = 35.8 bits (81), Expect = 2.1 Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Frame = +1
Query: 10 PLSKRSQTGSPTDSRKGSVSPPVKRYRPRSR-PTSEQSLSREATRSRS 150 P S RS + SP SVSPP +R R RSR P ++S SR +RS+S Sbjct: 217 PRSHRSTSRSPRRRHSPSVSPPYRR-RSRSRSPQRQRSCSRSRSRSKS 263
>tr|A2A8W1|A2A8W1_MOUSE Serine/arginine repetitive matrix 1 (Fragment) OS=Mus musculus GN=Srrm1 PE=4 SV=1 Length = 317
Score = 35.4 bits (80), Expect = 2.8 Identities = 19/51 (37%), Positives = 27/51 (52%) Frame = +1
Query: 1 PSPPLSKRSQTGSPTDSRKGSVSPPVKRYRPRSRPTSEQSLSREATRSRSV 153 PSPP +R+ + P R+ S SPP KR S P ++S + RS S+ Sbjct: 70 PSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPTVTKRRSPSL 120
>tr|A2A8V9|A2A8V9_MOUSE Serine/arginine repetitive matrix 1 OS=Mus musculus GN=Srrm1 PE=4 SV=1 Length = 918
Score = 35.4 bits (80), Expect = 2.8 Identities = 19/51 (37%), Positives = 27/51 (52%) Frame = +1
Query: 1 PSPPLSKRSQTGSPTDSRKGSVSPPVKRYRPRSRPTSEQSLSREATRSRSV 153 PSPP +R+ + P R+ S SPP KR S P ++S + RS S+ Sbjct: 620 PSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPTVTKRRSPSL 670
>tr|A2A8V8|A2A8V8_MOUSE Serine/arginine repetitive matrix 1 OS=Mus musculus GN=Srrm1 PE=4 SV=1 Length = 909
Score = 35.4 bits (80), Expect = 2.8 Identities = 19/51 (37%), Positives = 27/51 (52%) Frame = +1
Query: 1 PSPPLSKRSQTGSPTDSRKGSVSPPVKRYRPRSRPTSEQSLSREATRSRSV 153 PSPP +R+ + P R+ S SPP KR S P ++S + RS S+ Sbjct: 611 PSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPTVTKRRSPSL 661
>tr|Q9VU43|Q9VU43_DROME SRm160 OS=Drosophila melanogaster GN=SRm160 PE=1 SV=1 Length = 954
Score = 35.4 bits (80), Expect = 2.8 Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 3/53 (5%) Frame = +1
Query: 1 PSPPLSKRSQTGSPT---DSRKGSVSPPVKRYRPRSRPTSEQSLSREATRSRS 150 P P ++RS +GS R+ S SPP KR RS + +SLSR +RSRS Sbjct: 558 PPPARNRRSSSGSSAGGRQQRQRSASPPEKR---RSSHSRSRSLSRNRSRSRS 607
>tr|Q6AWQ1|Q6AWQ1_DROME RE71183p OS=Drosophila melanogaster GN=SRm160 PE=1 SV=1 Length = 954
Score = 35.4 bits (80), Expect = 2.8 Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 3/53 (5%) Frame = +1
Query: 1 PSPPLSKRSQTGSPT---DSRKGSVSPPVKRYRPRSRPTSEQSLSREATRSRS 150 P P ++RS +GS R+ S SPP KR RS + +SLSR +RSRS Sbjct: 558 PPPARNRRSSSGSSAGGRQQRQRSASPPEKR---RSSHSRSRSLSRNRSRSRS 607
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