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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK951949
Clone id TST38A01NGRL0012_M11
Library
Length 549
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0012_M11. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
ATGATACCTACTAGAGCTGATTGTTGGGTAGGCCTTGGAGGGCGGTTCACCTTGGAAGCT
TAGCTTTGGAATGAGTGGTTCCTACCTGCCTACGATCTTTCTATGCCGGCTCCTCCTTTT
TGGAATAGGTGGAGGCCGCTCCTCCTACTCATCGTAGGGCAGAAATGGCGGCTTAGGTTT
CGACAGTGGGAGTGTTTTGCCTGTGGAGAATGGTGGGCTCTGCTGCGCTGTTCGTGGCTT
CCTCAAGCCCTTCGCTCCACCCTTTGAAGGTGCATAGCCCACCTCAACGGCCTGGTCAAC
GAGATCTGTCTATACCCCCTTATCTAGATTTGGTTGCAGCTGTTTCTTGTTGGTCTTTGT
GGTGATGGAGTGGCCCCGACTCCCCTGATATGCGGCGGTATTCCTCTCTCAGGTCTCCTT
GCGTTTTTTTTTTGTGATGTCTTTGAGGGTGGCTCCCTATCTAGCCGATGTAGTATCGTG
TTCGCATCTTGGAGTGTTGGAATGGCAGTCCTTGTGGTTTCTGTGGCAAAAAAAAAAAAA
AAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q7N568
Definition sp|Q7N568|MDTH_PHOLL Multidrug resistance protein mdtH OS=Photorhabdus luminescens subsp. laumondii
Align length 34
Score (bit) 35.4
E-value 0.17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951949|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0012_M11, 5'
         (527 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7N568|MDTH_PHOLL Multidrug resistance protein mdtH OS=Photor...    35   0.17 
sp|P54258|ATN1_RAT Atrophin-1 OS=Rattus norvegicus GN=Atn1 PE=2 ...    34   0.49 
sp|Q5IS70|ATN1_PANTR Atrophin-1 OS=Pan troglodytes GN=ATN1 PE=2 ...    34   0.49 
sp|O35126|ATN1_MOUSE Atrophin-1 OS=Mus musculus GN=Atn1 PE=1 SV=1      34   0.49 
sp|P54259|ATN1_HUMAN Atrophin-1 OS=Homo sapiens GN=ATN1 PE=1 SV=2      34   0.49 
sp|Q9VSR3|ORB2_DROME Probable RNA-binding protein orb2 OS=Drosop...    33   0.84 
sp|O14562|UBFD1_HUMAN Ubiquitin domain-containing protein UBFD1 ...    33   1.1  
sp|A8GFK7|MDTH_SERP5 Multidrug resistance protein mdtH OS=Serrat...    33   1.1  
sp|Q1E0A3|MCA1_COCIM Metacaspase-1 OS=Coccidioides immitis GN=MC...    33   1.1  
sp|P73133|ARGD_SYNY3 Acetylornithine aminotransferase OS=Synecho...    32   1.4  
sp|Q80WC3|TNC18_MOUSE Trinucleotide repeat-containing gene 18 pr...    32   2.4  
sp|Q9DIC5|RDRP_AHNNV RNA-directed RNA polymerase OS=Atlantic hal...    32   2.4  
sp|Q9QXE2|DPOLL_MOUSE DNA polymerase lambda OS=Mus musculus GN=P...    31   3.2  
sp|A4F870|DNLI_SACEN Probable DNA ligase OS=Saccharopolyspora er...    31   3.2  
sp|Q02040|SF17A_HUMAN Splicing factor, arginine/serine-rich 17A ...    30   9.2  
sp|A2QBZ0|SEC31_ASPNC Protein transport protein sec31 OS=Aspergi...    30   9.2  
sp|P36196|ACES_CHICK Acetylcholinesterase OS=Gallus gallus GN=AC...    30   9.2  

>sp|Q7N568|MDTH_PHOLL Multidrug resistance protein mdtH
           OS=Photorhabdus luminescens subsp. laumondii GN=mdtH
           PE=3 SV=1
          Length = 401

 Score = 35.4 bits (80), Expect = 0.17
 Identities = 17/34 (50%), Positives = 19/34 (55%)
 Frame = +1

Query: 22  CWVGLGGRFTLEA*LWNEWFLPAYDLSMPAPPFW 123
           CW G  G F L A +WN  FLPAY +S    P W
Sbjct: 167 CWTG-AGVFVLAA-IWNALFLPAYRISTTRTPIW 198


>sp|P54258|ATN1_RAT Atrophin-1 OS=Rattus norvegicus GN=Atn1 PE=2
           SV=1
          Length = 1183

 Score = 33.9 bits (76), Expect = 0.49
 Identities = 21/59 (35%), Positives = 26/59 (44%)
 Frame = +3

Query: 249 PSLHPLKVHSPPQRPGQRDLSIPPYLDLVAAVSCWSLW*WSGPDSPDMRRYSSLRSPCV 425
           PSL P+  H PP  PG    ++PPYL               GPD+P +R  S    P V
Sbjct: 845 PSLGPVP-HRPPFEPGSAVATVPPYL---------------GPDTPALRTLSEYARPHV 887


>sp|Q5IS70|ATN1_PANTR Atrophin-1 OS=Pan troglodytes GN=ATN1 PE=2
           SV=1
          Length = 1186

 Score = 33.9 bits (76), Expect = 0.49
 Identities = 21/59 (35%), Positives = 26/59 (44%)
 Frame = +3

Query: 249 PSLHPLKVHSPPQRPGQRDLSIPPYLDLVAAVSCWSLW*WSGPDSPDMRRYSSLRSPCV 425
           PSL P+  H PP  PG    ++PPYL               GPD+P +R  S    P V
Sbjct: 848 PSLGPVP-HRPPFEPGSAVATVPPYL---------------GPDTPALRTLSEYARPHV 890


>sp|O35126|ATN1_MOUSE Atrophin-1 OS=Mus musculus GN=Atn1 PE=1 SV=1
          Length = 1175

 Score = 33.9 bits (76), Expect = 0.49
 Identities = 21/59 (35%), Positives = 26/59 (44%)
 Frame = +3

Query: 249 PSLHPLKVHSPPQRPGQRDLSIPPYLDLVAAVSCWSLW*WSGPDSPDMRRYSSLRSPCV 425
           PSL P+  H PP  PG    ++PPYL               GPD+P +R  S    P V
Sbjct: 837 PSLGPVP-HRPPFEPGSAVATVPPYL---------------GPDTPALRTLSEYARPHV 879


>sp|P54259|ATN1_HUMAN Atrophin-1 OS=Homo sapiens GN=ATN1 PE=1 SV=2
          Length = 1185

 Score = 33.9 bits (76), Expect = 0.49
 Identities = 21/59 (35%), Positives = 26/59 (44%)
 Frame = +3

Query: 249 PSLHPLKVHSPPQRPGQRDLSIPPYLDLVAAVSCWSLW*WSGPDSPDMRRYSSLRSPCV 425
           PSL P+  H PP  PG    ++PPYL               GPD+P +R  S    P V
Sbjct: 847 PSLGPVP-HRPPFEPGSAVATVPPYL---------------GPDTPALRTLSEYARPHV 889


>sp|Q9VSR3|ORB2_DROME Probable RNA-binding protein orb2
           OS=Drosophila melanogaster GN=orb2 PE=1 SV=1
          Length = 704

 Score = 33.1 bits (74), Expect = 0.84
 Identities = 21/77 (27%), Positives = 30/77 (38%)
 Frame = -2

Query: 445 QRHHKKKTQGDLREEYRRISGESGPLHHHKDQQETAATKSR*GGIDRSR*PGR*GGLCTF 266
           Q+H + + Q  L +  +++S     LHHH  QQ+        GG      PG  GG   +
Sbjct: 187 QQHQQHQQQQQLHQHQQQLSPNLSALHHHHQQQQQLRES---GGSHSPSSPGGGGGGSPY 243

Query: 265 KGWSEGLEEATNSAAEP 215
            G   G      S   P
Sbjct: 244 NGSQAGCSSGGISPIPP 260


>sp|O14562|UBFD1_HUMAN Ubiquitin domain-containing protein UBFD1
           OS=Homo sapiens GN=UBFD1 PE=1 SV=1
          Length = 533

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -3

Query: 291 AVEVGYAPSKGGAKGLRKPRTAQQSP 214
           + +VG APS G A+G R+P   QQSP
Sbjct: 61  SAQVGLAPSYGAARGRRRPLALQQSP 86


>sp|A8GFK7|MDTH_SERP5 Multidrug resistance protein mdtH OS=Serratia
           proteamaculans (strain 568) GN=mdtH PE=3 SV=1
          Length = 401

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 17/32 (53%), Positives = 18/32 (56%)
 Frame = +1

Query: 22  CWVGLGGRFTLEA*LWNEWFLPAYDLSMPAPP 117
           CWVG  G F L A  WN W LPAY +S    P
Sbjct: 167 CWVG-AGIFVLAAG-WNAWLLPAYRISTVRTP 196


>sp|Q1E0A3|MCA1_COCIM Metacaspase-1 OS=Coccidioides immitis GN=MCA1
           PE=3 SV=1
          Length = 462

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -1

Query: 452 PPSKTSQKKNARRPERGIPPHIRGVGATPSPQRP 351
           PPS     +    P+ G PPH    G TPSPQ P
Sbjct: 48  PPSYPPPGQYGHPPQPGYPPHSSPYGHTPSPQPP 81


>sp|P73133|ARGD_SYNY3 Acetylornithine aminotransferase
           OS=Synechocystis sp. (strain PCC 6803) GN=argD PE=3 SV=1
          Length = 429

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +1

Query: 388 ICGGIPLSGLLAFFFCDVFEGGSLSSRCSIVFASWSVGMAVL 513
           + GG+P+  ++   FCDVFE G+ +S       + + G+AVL
Sbjct: 282 LAGGVPIGAMMCKKFCDVFEPGNHASTFGGNPLACAAGLAVL 323
tr_hit_id Q4S201
Definition tr|Q4S201|Q4S201_TETNG Chromosome undetermined SCAF14764, whole genome shotgun sequence. (Fragment) OS=Tetraodon nigroviridis
Align length 45
Score (bit) 34.3
E-value 4.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951949|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0012_M11, 5'
         (527 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4S201|Q4S201_TETNG Chromosome undetermined SCAF14764, whole ...    34   4.0  
tr|Q82MP6|Q82MP6_STRAW Putative benzoate transport protein OS=St...    34   4.0  
tr|Q2T3G6|Q2T3G6_BURTA Diaminopimelate decarboxylase OS=Burkhold...    34   4.0  
tr|A9GNE0|A9GNE0_9RHOB Putative uncharacterized protein OS=Phaeo...    34   4.0  
tr|A9ELP6|A9ELP6_9RHOB Putative uncharacterized protein OS=Phaeo...    34   4.0  
tr|Q4QEH7|Q4QEH7_LEIMA Putative uncharacterized protein OS=Leish...    34   4.0  
tr|Q64Q03|Q64Q03_BACFR Putative acetyltransferase OS=Bacteroides...    34   5.2  
tr|Q5L9R1|Q5L9R1_BACFN Putative acetyltransferase OS=Bacteroides...    34   5.2  
tr|Q2JUB9|Q2JUB9_SYNJA Acetylornithine transaminase OS=Synechoco...    34   5.2  
tr|Q0JR45|Q0JR45_ORYSJ Os01g0120600 protein (Fragment) OS=Oryza ...    34   5.2  
tr|A6QP47|A6QP47_BOVIN ATN1 protein (Fragment) OS=Bos taurus GN=...    34   5.2  
tr|Q86V38|Q86V38_HUMAN Atrophin 1 OS=Homo sapiens GN=ATN1 PE=2 SV=1    34   5.2  
tr|Q59FW4|Q59FW4_HUMAN Atrophin-1 variant (Fragment) OS=Homo sap...    34   5.2  
tr|B8LZ96|B8LZ96_9EURO Chromo domain protein Chp1p, putative OS=...    34   5.2  
tr|Q668S8|Q668S8_YERPS Putative uncharacterized protein OS=Yersi...    33   6.7  
tr|Q2JLM2|Q2JLM2_SYNJB Acetylornithine transaminase OS=Synechoco...    33   6.7  
tr|B4WXV1|B4WXV1_9GAMM PepSY-associated TM helix family OS=Alcan...    33   6.7  
tr|Q9QCX3|Q9QCX3_9VIRU Replication protein OS=Chayote mosaic vir...    33   8.8  
tr|B1YXU0|B1YXU0_BURA4 Putative uncharacterized protein OS=Burkh...    33   8.8  
tr|Q0IQZ6|Q0IQZ6_ORYSJ Os11g0695700 protein OS=Oryza sativa subs...    33   8.8  
tr|B7PDN7|B7PDN7_IXOSC Cell cycle control protein, putative OS=I...    33   8.8  
tr|A4V1P2|A4V1P2_DROME Orb2, isoform C OS=Drosophila melanogaste...    33   8.8  

>tr|Q4S201|Q4S201_TETNG Chromosome undetermined SCAF14764, whole
            genome shotgun sequence. (Fragment) OS=Tetraodon
            nigroviridis GN=GSTENG00025312001 PE=4 SV=1
          Length = 3691

 Score = 34.3 bits (77), Expect = 4.0
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -1

Query: 491  QDANTILHRLDREPPSKTSQKKNARRPERGIPPHIRGVGATPSPQ 357
            Q ANT +  ++  PP K  +  +A     GIPPH+       SPQ
Sbjct: 1985 QPANTSITNINALPPLKVEESSSATAAVPGIPPHVNAAPLGMSPQ 2029


>tr|Q82MP6|Q82MP6_STRAW Putative benzoate transport protein
           OS=Streptomyces avermitilis GN=SAV1614 PE=4 SV=1
          Length = 442

 Score = 34.3 bits (77), Expect = 4.0
 Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
 Frame = +1

Query: 91  YDLSMPAPPF-----WNRWRPLLLLIVGQKWRLRFRQWECFACGEWWALLRCSWLPQALR 255
           YD+ MPAP         RW  L  L  G  WR     W    CG        +WLP  +R
Sbjct: 216 YDVDMPAPEAERPAAGERWSALAALFRGNLWRTTLLFWLASFCGLLLVYGVSNWLPTMMR 275


>tr|Q2T3G6|Q2T3G6_BURTA Diaminopimelate decarboxylase
           OS=Burkholderia thailandensis (strain E264 / ATCC 700388
           / DSM 13276 / CIP 106301) GN=BTH_II2095 PE=3 SV=1
          Length = 907

 Score = 34.3 bits (77), Expect = 4.0
 Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 8/145 (5%)
 Frame = -1

Query: 434 QKKNARRPERGIPPHIRGVGATPSPQRPTRNSCNQI*IRGYRQISLTRPLRWAMHLQRVE 255
           +++N  R +R   PH R V +  SP   +R++      RG  +    RPLR  + LQR+ 
Sbjct: 302 RRRNRAREKRAPEPHGRDVPSERSPVSRSRSARRDFARRGGTRADRRRPLR-PIRLQRLR 360

Query: 254 RRA*GSHEQRSR--------AHHSPQAKHSHCRNLSRHFCPTMSRRSGLHLFQKGGAGIE 99
            RA      R+R        A  + +A+ +      R       RR+ L   ++  AG  
Sbjct: 361 TRARRRRPARARRVRAELHGARQAGRARRAARARACRAARRVAGRRARLRAHRRQPAGCR 420

Query: 98  RS*AGRNHSFQS*ASKVNRPPRPTQ 24
                R  S      + +RP RP +
Sbjct: 421 LRRRNRRAS-----GRRHRPKRPAR 440


>tr|A9GNE0|A9GNE0_9RHOB Putative uncharacterized protein
           OS=Phaeobacter gallaeciensis BS107 GN=RGBS107_17363 PE=4
           SV=1
          Length = 135

 Score = 34.3 bits (77), Expect = 4.0
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = +1

Query: 115 PFWNRWRPLLLLIVGQKWRLRFRQWECFACGEWWALLRCSWL 240
           P W  W   L+ ++    R  + QW C  C  +W  L   W+
Sbjct: 21  PEWGTWFKTLISLLPSPLRTLYEQWHCPFCAGFWIALALHWM 62


>tr|A9ELP6|A9ELP6_9RHOB Putative uncharacterized protein
           OS=Phaeobacter gallaeciensis 2.10 GN=RG210_14251 PE=4
           SV=1
          Length = 135

 Score = 34.3 bits (77), Expect = 4.0
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = +1

Query: 115 PFWNRWRPLLLLIVGQKWRLRFRQWECFACGEWWALLRCSWL 240
           P W  W   L+ ++    R  + QW C  C  +W  L   W+
Sbjct: 21  PEWGTWFKTLISLLPSPLRTLYEQWHCPFCAGFWIALALHWM 62


>tr|Q4QEH7|Q4QEH7_LEIMA Putative uncharacterized protein
           OS=Leishmania major GN=LmjF17.0110 PE=4 SV=1
          Length = 526

 Score = 34.3 bits (77), Expect = 4.0
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
 Frame = -3

Query: 384 GSRGHSITTKTNKKQLQPNLD-KGV*TDLVDQAVEVGYAPSKGGAKGLRKPRTAQ----- 223
           GS GH+ +T TN +  +P+L   G  + L D  ++ G A +  G K   +P  A+     
Sbjct: 58  GSHGHATSTHTNPRSREPSLTVAGRSSSLPDTPLKRGSAAAASGVKSFSRPAAARFVAAG 117

Query: 222 QSPPFS 205
            +PP S
Sbjct: 118 NTPPLS 123


>tr|Q64Q03|Q64Q03_BACFR Putative acetyltransferase OS=Bacteroides
           fragilis GN=BF3685 PE=4 SV=1
          Length = 177

 Score = 33.9 bits (76), Expect = 5.2
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
 Frame = +3

Query: 375 PDSPDMRRYSSLRSPCVFFL*C-----L*GWLPI*PM*YRVRILECWNGSPCGFC 524
           P   D+  Y +L +  V+F+ C     L  ++P+    YR  I+E   G+PCGFC
Sbjct: 19  PFVKDIYDYYTLHTTVVYFVHCASIDELKNYIPVGDPVYRSFIIETPEGAPCGFC 73


>tr|Q5L9R1|Q5L9R1_BACFN Putative acetyltransferase OS=Bacteroides
           fragilis (strain ATCC 25285 / NCTC 9343) GN=BF3476 PE=4
           SV=1
          Length = 172

 Score = 33.9 bits (76), Expect = 5.2
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
 Frame = +3

Query: 375 PDSPDMRRYSSLRSPCVFFL*C-----L*GWLPI*PM*YRVRILECWNGSPCGFC 524
           P   D+  Y +L +  V+F+ C     L  ++P+    YR  I+E   G+PCGFC
Sbjct: 14  PFVKDIYDYYTLHTTVVYFVHCASIDELKNYIPVGDPVYRSFIIETPEGAPCGFC 68


>tr|Q2JUB9|Q2JUB9_SYNJA Acetylornithine transaminase
           OS=Synechococcus sp. (strain JA-3-3Ab) GN=argD PE=3 SV=1
          Length = 418

 Score = 33.9 bits (76), Expect = 5.2
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
 Frame = +1

Query: 346 LVGLCGDGVAPTPL-----ICGGIPLSGLLAFFFCDVFEGGSLSSRCSIVFASWSVGMAV 510
           L G C  G+ P        + GGIP+  LLA  FC VF+ G  +S       + +VG+AV
Sbjct: 248 LWGYCNLGIEPDVFTLAKGLAGGIPIGALLAKDFCAVFQPGDHASTFGGNPLACAVGLAV 307


>tr|Q0JR45|Q0JR45_ORYSJ Os01g0120600 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os01g0120600 PE=4 SV=1
          Length = 282

 Score = 33.9 bits (76), Expect = 5.2
 Identities = 17/36 (47%), Positives = 20/36 (55%)
 Frame = -1

Query: 458 REPPSKTSQKKNARRPERGIPPHIRGVGATPSPQRP 351
           R+P + TS  + ARRP    PPH   VGA P P  P
Sbjct: 26  RDPATATSPPRRARRPP---PPHAPPVGAAPPPPPP 58