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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK951952
Clone id TST38A01NGRL0012_M14
Library
Length 551
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0012_M14. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
AGATGGCAGTGTCTCCACTGTGAAGGAGGGAACCGACAAGAGGGGCCAATATGCACTCAA
TAATGGCTTTTTAACGAGTTCCAGTGACAGCTATACTTCTGAGGAGGATGATAGCCAGTT
TTTTCCGAAGAGAATTGCTTTCAATTATGGTTTTCAAGCTAAATTTCTTAGGAAAGGCCC
TACAGTTCCTGGGAATGTGTTCAAGCTTGCATTTGAGAATTTTGGCAGAGAGTGGACGGC
TTTGCGGCGAAGCTATTTATTTGCCAAATTGGAGAAAATTAATATAAACAAGATCGAAGG
AGGTCCTCTAGGGATTGTTTCCGTTTATTCAAGCCGTGGGTTTGTGTTATTTTTGAGGGG
GTTTGACAAATTACTGCAGTTGTATGATGGACTTCCAAAAGTAAAGCCAGATATACAGGT
CGTGGAGGGAGGAAGTGGATGAATTACAAAAAACTTTAAAGAAGTTGACACTCAGTAATG
ATGCAGTCTGGGAAAAGAGAGAAAAATCGCCCTCCTGTTGAAGCACCATGGTGGATCCTT
TGGGTCCTTAC
■■Homology search results ■■ -
sp_hit_id Q54316
Definition sp|Q54316|HLYB_TREHY Hemolysin B OS=Treponema hyodysenteriae
Align length 110
Score (bit) 33.1
E-value 0.92
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951952|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0012_M14, 5'
         (551 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q54316|HLYB_TREHY Hemolysin B OS=Treponema hyodysenteriae GN=...    33   0.92 
sp|Q6MD97|CLPB_PARUW Chaperone protein clpB OS=Protochlamydia am...    32   2.0  
sp|Q1ZXD6|ROCO5_DICDI Probable serine/threonine-protein kinase r...    31   4.6  
sp|Q5RES4|MED1_PONAB Mediator of RNA polymerase II transcription...    30   6.0  

>sp|Q54316|HLYB_TREHY Hemolysin B OS=Treponema hyodysenteriae
           GN=tlyB PE=3 SV=1
          Length = 828

 Score = 33.1 bits (74), Expect = 0.92
 Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 8/110 (7%)
 Frame = +2

Query: 164 FLRKGPTVPGN--VFKLAFENFGREWTALRRSYLFAKLEKININKIEGGPLGIVSVYSSR 337
           F+  GPT  G   + K+  E    +  AL R  +   +EK  ++++ G P G V      
Sbjct: 550 FIFLGPTGVGKTALAKVLSEFMFGDSDALIRIDMSEFMEKFAVSRLIGAPPGYVGYEEGG 609

Query: 338 GFVLFLRGFDKLLQLYDGLPKVKPDI-----QVVEGGSG*ITKNF-KEVD 469
           G    +R     L L+D + K  PD+     QV+E G   +T NF ++VD
Sbjct: 610 GLTEKVRRKPYSLILFDEIEKAHPDVTNILLQVLEEGQ--LTDNFGRKVD 657


>sp|Q6MD97|CLPB_PARUW Chaperone protein clpB OS=Protochlamydia
           amoebophila (strain UWE25) GN=clpB PE=3 SV=1
          Length = 868

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
 Frame = +2

Query: 164 FLRKGPTVPGNVF---KLAFENFGREWTALRRSYLFAKLEKININKIEGGPLGIVSVYSS 334
           FL  GPT  G       LAF+ F ++  AL R  +   +EK  ++K+ G P G +     
Sbjct: 602 FLFLGPTGVGKTELAKALAFQLFNQD-EALIRLDMSEYMEKHTVSKLIGSPPGYIGYEEG 660

Query: 335 RGFVLFLRGFDKLLQLYDGLPKVKPDI 415
                 LR     + L+D + K  PD+
Sbjct: 661 GQLTEALRRRPYAVVLFDEIEKAHPDV 687


>sp|Q1ZXD6|ROCO5_DICDI Probable serine/threonine-protein kinase roco5
            OS=Dictyostelium discoideum GN=roco5 PE=3 SV=1
          Length = 2800

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -3

Query: 495  FPR-LHHY*VSTSLKFFVIHPLPPSTTCISGFTFGSPSYNCSNLSNPLKN 349
            FP+ LHH  ++   KF ++HPLP     IS  +  SPS    +L+N   N
Sbjct: 1581 FPQHLHHVLLAILQKFEIVHPLPDPKATISS-SSSSPSTTQKSLNNSGSN 1629


>sp|Q5RES4|MED1_PONAB Mediator of RNA polymerase II transcription
           subunit 1 OS=Pongo abelii GN=MED1 PE=2 SV=1
          Length = 1581

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = -3

Query: 471 VSTSLKFFVIHPLPPSTTCISGFTFGSPSYNCSNLSNPLKNNTNPRLE*TETIPRGPPSI 292
           ++ +++  V   LPP++         SP Y  +  SNP+   T P    T T P GP + 
Sbjct: 528 IAETVEDMVKKNLPPAS---------SPGYGMTTGSNPMSGTTTP----TNTFPGGPITT 574

Query: 291 LFILIFS 271
           LF +  S
Sbjct: 575 LFNMSMS 581
tr_hit_id Q8S308
Definition tr|Q8S308|Q8S308_CHLRE Quinol-to-oxygen oxidoreductase OS=Chlamydomonas reinhardtii
Align length 108
Score (bit) 30.0
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951952|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0012_M14, 5'
         (551 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8S308|Q8S308_CHLRE Quinol-to-oxygen oxidoreductase OS=Chlamy...    30   1.5  
tr|A8IU73|A8IU73_CHLRE Alternative oxidase OS=Chlamydomonas rein...    30   1.5  
tr|B4N733|B4N733_DROWI GK23609 OS=Drosophila willistoni GN=GK236...    35   3.4  
tr|Q00UF9|Q00UF9_OSTTA Quinol-to-oxygen oxidoreductase (ISS) OS=...    27   5.4  
tr|A0YNB3|A0YNB3_9CYAN Glutamyl-tRNA amidotransferase subunit A ...    33   7.7  
tr|Q24CZ9|Q24CZ9_TETTH Putative uncharacterized protein OS=Tetra...    33   7.7  
tr|Q2UFH5|Q2UFH5_ASPOR Permease of the major facilitator superfa...    33   7.7  
tr|B8NHN1|B8NHN1_ASPFL MFS transporter, putative OS=Aspergillus ...    33   7.7  
tr|Q1WUY9|Q1WUY9_LACS1 ATP-dependent clp protease ATP-binding su...    33   10.0 
tr|A7P833|A7P833_VITVI Chromosome chr3 scaffold_8, whole genome ...    33   10.0 
tr|A5BB13|A5BB13_VITVI Putative uncharacterized protein OS=Vitis...    33   10.0 
tr|A2ENP7|A2ENP7_TRIVA Putative uncharacterized protein OS=Trich...    33   10.0 
tr|B2WL77|B2WL77_PYRTR Predicted protein OS=Pyrenophora tritici-...    33   10.0 

>tr|Q8S308|Q8S308_CHLRE Quinol-to-oxygen oxidoreductase
           OS=Chlamydomonas reinhardtii PE=2 SV=1
          Length = 471

 Score = 30.0 bits (66), Expect(2) = 1.5
 Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 5/108 (4%)
 Frame = +2

Query: 122 FPKRIAFNYGFQAKFLR-----KGPTVPGNVFKLAFENFGREWTALRRSYLFAKLEKINI 286
           F + +  +YGF++   R         +P N F+L ++NF  E  +LR+S  F     I+ 
Sbjct: 92  FMEVMCCDYGFRSGASRMYQQENDGRIPKNAFQLGWDNFKSELRSLRQSIRFDDYSTISE 151

Query: 287 NKIEGGPLGIVSVYSSRGFVLFLRGFDKLLQLYDGLPKVKPDIQVVEG 430
                 P+   +    +  +  L   D+ L+    L  ++P    ++G
Sbjct: 152 ANPPRTPMSRAAYSVGQAALDSLDAVDRALEAAQVLEPLRPRAVTLDG 199



 Score = 25.4 bits (54), Expect(2) = 1.5
 Identities = 12/26 (46%), Positives = 19/26 (73%), Gaps = 3/26 (11%)
 Frame = +3

Query: 441 ELQKTLKKLTLSNDAVWEK---REKS 509
           E++  LK+L LSN A+W++   RE+S
Sbjct: 216 EIRSKLKQLKLSNKAMWDREHAREQS 241


>tr|A8IU73|A8IU73_CHLRE Alternative oxidase OS=Chlamydomonas
           reinhardtii GN=PTOX1 PE=4 SV=1
          Length = 471

 Score = 30.0 bits (66), Expect(2) = 1.5
 Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 5/108 (4%)
 Frame = +2

Query: 122 FPKRIAFNYGFQAKFLR-----KGPTVPGNVFKLAFENFGREWTALRRSYLFAKLEKINI 286
           F + +  +YGF++   R         +P N F+L ++NF  E  +LR+S  F     I+ 
Sbjct: 92  FMEVMCCDYGFRSGASRMYQQENDGRIPKNAFQLGWDNFKSELRSLRQSIRFDDYSTISE 151

Query: 287 NKIEGGPLGIVSVYSSRGFVLFLRGFDKLLQLYDGLPKVKPDIQVVEG 430
                 P+   +    +  +  L   D+ L+    L  ++P    ++G
Sbjct: 152 ANPPRTPMSRAAYSVGQAALDSLDAVDRALEAAQVLEPLRPRAVTLDG 199



 Score = 25.4 bits (54), Expect(2) = 1.5
 Identities = 12/26 (46%), Positives = 19/26 (73%), Gaps = 3/26 (11%)
 Frame = +3

Query: 441 ELQKTLKKLTLSNDAVWEK---REKS 509
           E++  LK+L LSN A+W++   RE+S
Sbjct: 216 EIRSKLKQLKLSNKAMWDREHAREQS 241


>tr|B4N733|B4N733_DROWI GK23609 OS=Drosophila willistoni GN=GK23609
           PE=4 SV=1
          Length = 960

 Score = 34.7 bits (78), Expect = 3.4
 Identities = 21/48 (43%), Positives = 28/48 (58%)
 Frame = -3

Query: 432 PPSTTCISGFTFGSPSYNCSNLSNPLKNNTNPRLE*TETIPRGPPSIL 289
           P +TT  +G   GSP  +CS+ S P K++T   LE     P+GPPS L
Sbjct: 84  PIATTMNAG---GSPVPSCSSPSTPTKSHTPSPLESMAHTPQGPPSHL 128


>tr|Q00UF9|Q00UF9_OSTTA Quinol-to-oxygen oxidoreductase (ISS)
           OS=Ostreococcus tauri GN=Ot16g00910 PE=4 SV=1
          Length = 505

 Score = 26.9 bits (58), Expect(2) = 5.4
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +1

Query: 493 KREKNRPPVEAPW 531
           +REKNRP V APW
Sbjct: 217 EREKNRPEVPAPW 229



 Score = 26.6 bits (57), Expect(2) = 5.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 441 ELQKTLKKLTLSNDAVWEKREKSP 512
           EL+  L+ L L +DA+WE+ +  P
Sbjct: 200 ELRVKLEALRLDSDAIWEREKNRP 223


>tr|A0YNB3|A0YNB3_9CYAN Glutamyl-tRNA amidotransferase subunit A
           OS=Lyngbya sp. PCC 8106 GN=L8106_00740 PE=4 SV=1
          Length = 99

 Score = 33.5 bits (75), Expect = 7.7
 Identities = 23/70 (32%), Positives = 34/70 (48%)
 Frame = +2

Query: 200 FKLAFENFGREWTALRRSYLFAKLEKININKIEGGPLGIVSVYSSRGFVLFLRGFDKLLQ 379
           + L    +  E+T  RRS+ F+KL    I+ +   PL    +YS      F R   KL+Q
Sbjct: 6   YPLCVSFYRSEFTKNRRSF-FSKLISEVISSLNSNPLSPNQLYSKALITQFNRYHLKLIQ 64

Query: 380 LYDGLPKVKP 409
           +   +PKV P
Sbjct: 65  ICTEIPKVMP 74


>tr|Q24CZ9|Q24CZ9_TETTH Putative uncharacterized protein
           OS=Tetrahymena thermophila SB210 GN=TTHERM_00711940 PE=4
           SV=1
          Length = 1141

 Score = 33.5 bits (75), Expect = 7.7
 Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
 Frame = -3

Query: 390 PSYNCSNLSNPLKNNTNPRLE*TETIPRGPPSILFILIFS--NLANK*LRRKAVHSLPKF 217
           PS+NC+NLS+    + +  L+ T +IP  PPS     + S  N +N+ L ++ + SLP  
Sbjct: 166 PSFNCNNLSS---ISASSILKPTNSIPPQPPSTRQNALPSKDNRSNQFLSQQRLQSLPNQ 222

Query: 216 SNASLN 199
           SN + N
Sbjct: 223 SNNNSN 228


>tr|Q2UFH5|Q2UFH5_ASPOR Permease of the major facilitator
           superfamily OS=Aspergillus oryzae GN=AO090026000207 PE=4
           SV=1
          Length = 508

 Score = 33.5 bits (75), Expect = 7.7
 Identities = 19/66 (28%), Positives = 33/66 (50%)
 Frame = +3

Query: 81  PVTAILLRRMIASFFRRELLSIMVFKLNFLGKALQFLGMCSSLHLRILAESGRLCGEAIY 260
           P+T +LL+R + S F   ++ +    +  +G    F G+ ++     LAE+G   G + Y
Sbjct: 112 PLTNVLLKRTLPSIFIPTIIVLWGICMTTMGLVHNFSGLMAARWFLGLAEAGLFPGISYY 171

Query: 261 LPNWRK 278
           L  W K
Sbjct: 172 LSCWYK 177


>tr|B8NHN1|B8NHN1_ASPFL MFS transporter, putative OS=Aspergillus
           flavus NRRL3357 GN=AFLA_137250 PE=4 SV=1
          Length = 514

 Score = 33.5 bits (75), Expect = 7.7
 Identities = 19/66 (28%), Positives = 33/66 (50%)
 Frame = +3

Query: 81  PVTAILLRRMIASFFRRELLSIMVFKLNFLGKALQFLGMCSSLHLRILAESGRLCGEAIY 260
           P+T +LL+R + S F   ++ +    +  +G    F G+ ++     LAE+G   G + Y
Sbjct: 118 PLTNVLLKRTLPSIFIPTIIVLWGICMTTMGLVHNFSGLMAARWFLGLAEAGLFPGISYY 177

Query: 261 LPNWRK 278
           L  W K
Sbjct: 178 LSCWYK 183


>tr|Q1WUY9|Q1WUY9_LACS1 ATP-dependent clp protease ATP-binding
           subunit OS=Lactobacillus salivarius subsp. salivarius
           (strain UCC118) GN=clpE PE=3 SV=1
          Length = 730

 Score = 33.1 bits (74), Expect = 10.0
 Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
 Frame = +2

Query: 131 RIAFNYGFQ--AKFLRKGPTVPGNVF---KLAFENFGREWTALRRSYLFAKLEKININKI 295
           RI FN   +    FL  GPT  G      +LA E FG E + +R   +   +EK +++K+
Sbjct: 454 RIGFNKSGRPIGSFLFVGPTGVGKTETAKQLARELFGTEDSMIRFD-MSEYMEKFSVSKL 512

Query: 296 EGGPLGIVSVYSSRGFVLFLRGFDKLLQLYDGLPKVKPDI 415
            G P G V    +      +R     L L D + K  PD+
Sbjct: 513 IGSPPGYVGYEEAGQLTEQVRRHPYSLILLDEVEKAHPDV 552


>tr|A7P833|A7P833_VITVI Chromosome chr3 scaffold_8, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00036018001
           PE=4 SV=1
          Length = 757

 Score = 33.1 bits (74), Expect = 10.0
 Identities = 29/89 (32%), Positives = 38/89 (42%)
 Frame = +2

Query: 140 FNYGFQAKFLRKGPTVPGNVFKLAFENFGREWTALRRSYLFAKLEKININKIEGGPLGIV 319
           F Y       RKG  VP  +F  A  +      A     L A  E I   +I+G PLGIV
Sbjct: 329 FAYSVYTDMTRKG-VVPDEMFLSALID-----VAGHAGKLDAAFEVIQEARIQGIPLGIV 382

Query: 320 SVYSSRGFVLFLRGFDKLLQLYDGLPKVK 406
           S  S  G     + + K L+LY  +  +K
Sbjct: 383 SYSSLMGACSNAKNWQKALELYVDIKSMK 411