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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK951976
Clone id TST38A01NGRL0012_N14
Library
Length 569
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0012_N14. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
TGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTATAAACTCTTTTGTACTGTGAAAC
TGCGAATGGCTCATTAAATCAGTTATAGTTTCTTTGATGGTACCTTGCTACTCGGATAAC
CGTAGTAATTCTAGAGCTAATACGTGCACCAAATCCCGACTTCTGGAAGGGACGCATTTA
TTAGATAAAAGGCCGATGCGGGCTTGCCCGGTAATGCGGTGAATCATGATAACTCAACGA
ATCGCACGGCCTTGGCGCCGGCGATGCTTCATTCAAATTTCTGCCCTATCAACTTTCGAT
GGTAGGATAGAGGCCTACCATGGTGGTGACGGGTGACGGAGAATTAGGGTTCGATTCCGG
AGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCC
AATCCCGACACGGGGAGGTAGTGACAATAAATAACAATACTGGGCTTTTTCAAGTCTGGT
AATTGGAATGAGTACAATCTAAATCCCTTAACGAGGATCCATTGGAGGGCAAGTCTGGTG
CCAGCAGCCGCGGTAATTCCAGCTCCAAT
■■Homology search results ■■ -
sp_hit_id Q06J40
Definition sp|Q06J40|PSAB_BIGNA Photosystem I P700 chlorophyll a apoprotein A2 OS=Bigelowiella natans
Align length 48
Score (bit) 30.8
E-value 4.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951976|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0012_N14, 5'
         (569 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q06J40|PSAB_BIGNA Photosystem I P700 chlorophyll a apoprotein...    31   4.9  
sp|Q5XHY8|CF146_RAT Uncharacterized protein C6orf146 homolog OS=...    30   6.4  

>sp|Q06J40|PSAB_BIGNA Photosystem I P700 chlorophyll a apoprotein A2
           OS=Bigelowiella natans GN=psaB PE=3 SV=1
          Length = 735

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = +1

Query: 379 GYHIQGRQQARKLPNPDTGR**Q*ITILGFFKSGNWNEYNLNPLTRIH 522
           G HI+       LP+PD          L  F SGNW+ Y+ NP T  H
Sbjct: 205 GQHIRWNNYLSTLPHPDG---------LAPFFSGNWSAYSTNPDTFNH 243


>sp|Q5XHY8|CF146_RAT Uncharacterized protein C6orf146 homolog
           OS=Rattus norvegicus PE=2 SV=2
          Length = 419

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +3

Query: 333 VTEN*GSIPEREPEKRLPHPRKAAGAQITQSRHGEVVTINNNTGLFQVW 479
           ++E  G    +  +  L  P +    Q+T S H    + NNN G+FQ+W
Sbjct: 41  LSEKDGVAGGKTNKNHLESPAEQLVLQLTVSEHAHSRSQNNNQGVFQLW 89
tr_hit_id A8NHW8
Definition tr|A8NHW8|A8NHW8_BRUMA Putative uncharacterized protein (Fragment) OS=Brugia malayi
Align length 36
Score (bit) 58.5
E-value 9.0e-21
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951976|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0012_N14, 5'
         (569 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8NHW8|A8NHW8_BRUMA Putative uncharacterized protein (Fragmen...    59   9e-21
tr|A8NMG1|A8NMG1_BRUMA Putative uncharacterized protein OS=Brugi...    69   5e-18
tr|A8P6U5|A8P6U5_BRUMA Putative uncharacterized protein (Fragmen...    91   3e-17
tr|B6A8G9|B6A8G9_HELAM CHK1 checkpoint-like protein (Fragment) O...    80   6e-14
tr|Q28EK6|Q28EK6_XENTR CHK1 checkpoint homolog (S. pombe) OS=Xen...    68   3e-10
tr|B5M6G9|B5M6G9_ORNHU Tumor differentially expressed protein OS...    66   2e-09
tr|A8NQF6|A8NQF6_BRUMA Putative uncharacterized protein OS=Brugi...    59   2e-07
tr|A8NVW9|A8NVW9_BRUMA Putative uncharacterized protein OS=Brugi...    57   7e-07
tr|A8JJG4|A8JJG4_CHLRE Predicted protein OS=Chlamydomonas reinha...    56   1e-06
tr|B8A8W0|B8A8W0_ORYSI Putative uncharacterized protein OS=Oryza...    54   8e-06
tr|Q3LVI1|Q3LVI1_TAROF TO71-3 (Fragment) OS=Taraxacum officinale...    53   1e-05
tr|B8RJH2|B8RJH2_CULTA Putative uncharacterized protein OS=Culex...    52   2e-05
tr|B0WM70|B0WM70_CULQU Putative uncharacterized protein OS=Culex...    52   2e-05
tr|A8DVV5|A8DVV5_NEMVE Predicted protein OS=Nematostella vectens...    52   2e-05
tr|B3SDC0|B3SDC0_TRIAD Predicted protein OS=Trichoplax adhaerens...    40   6e-05
tr|B3SDD1|B3SDD1_TRIAD Predicted protein OS=Trichoplax adhaerens...    33   6e-05
tr|A2GSA9|A2GSA9_TRIVA Putative uncharacterized protein OS=Trich...    49   3e-04
tr|A2HW58|A2HW58_TRIVA Putative uncharacterized protein OS=Trich...    48   4e-04
tr|A6MZI2|A6MZI2_ORYSI Putative uncharacterized protein (Fragmen...    47   7e-04
tr|A7RZL6|A7RZL6_NEMVE Predicted protein OS=Nematostella vectens...    47   7e-04
tr|A8PJZ3|A8PJZ3_BRUMA Putative uncharacterized protein (Fragmen...    44   0.006
tr|A2HZV9|A2HZV9_TRIVA Putative uncharacterized protein (Fragmen...    44   0.006
tr|Q4PMZ6|Q4PMZ6_IXOSC Secreted protein OS=Ixodes scapularis GN=...    43   0.011
tr|Q00Y69|Q00Y69_OSTTA Chromosome 12 contig 1, DNA sequence. (Fr...    33   0.044
tr|A8PGP3|A8PGP3_BRUMA Putative uncharacterized protein OS=Brugi...    40   0.12 
tr|A9ZLE7|A9ZLE7_COXBU Putative uncharacterized protein OS=Coxie...    39   0.15 
tr|A8P366|A8P366_BRUMA Putative uncharacterized protein OS=Brugi...    38   0.45 
tr|Q7M4B1|Q7M4B1_TRYCR Probable flagellar protein (Clone FCH-F8-...    37   1.00 
tr|O94098|O94098_METAN Ubiquitin carrier protein OS=Metarhizium ...    35   3.8  
tr|Q28BV9|Q28BV9_XENTR Novel sal-like protein OS=Xenopus tropica...    28   8.7  

>tr|A8NHW8|A8NHW8_BRUMA Putative uncharacterized protein (Fragment)
           OS=Brugia malayi GN=Bm1_02890 PE=4 SV=1
          Length = 128

 Score = 58.5 bits (140), Expect(3) = 9e-21
 Identities = 28/36 (77%), Positives = 31/36 (86%)
 Frame = +3

Query: 366 EPEKRLPHPRKAAGAQITQSRHGEVVTINNNTGLFQ 473
           EPEKRLPHPRKAAGAQIT S++ EVVT NN T LF+
Sbjct: 34  EPEKRLPHPRKAAGAQITHSQNEEVVTKNNETVLFE 69



 Score = 46.6 bits (109), Expect(3) = 9e-21
 Identities = 24/32 (75%), Positives = 27/32 (84%)
 Frame = +1

Query: 469 FKSGNWNEYNLNPLTRIHWRASLVPAAAVIPA 564
           F++G  N YNLN LTRI+ RASLVPAAAVIPA
Sbjct: 68  FEAGYRNGYNLNLLTRIYERASLVPAAAVIPA 99



 Score = 39.3 bits (90), Expect(3) = 9e-21
 Identities = 20/28 (71%), Positives = 21/28 (75%)
 Frame = +2

Query: 260 GDASFKFLPYQLSMVG*RPTMVVTGDGE 343
           GD S K LPYQLSMV   PTMVVTG+ E
Sbjct: 9   GDVSIKCLPYQLSMVVYVPTMVVTGEPE 36


>tr|A8NMG1|A8NMG1_BRUMA Putative uncharacterized protein OS=Brugia
           malayi GN=Bm1_05555 PE=4 SV=1
          Length = 115

 Score = 68.6 bits (166), Expect(2) = 5e-18
 Identities = 33/42 (78%), Positives = 36/42 (85%)
 Frame = +3

Query: 348 GSIPEREPEKRLPHPRKAAGAQITQSRHGEVVTINNNTGLFQ 473
           GS PEREPEKRLPHPRKAAGAQIT S++ EVVT NN T LF+
Sbjct: 15  GSTPEREPEKRLPHPRKAAGAQITHSQNEEVVTKNNETVLFE 56



 Score = 46.6 bits (109), Expect(2) = 5e-18
 Identities = 24/32 (75%), Positives = 27/32 (84%)
 Frame = +1

Query: 469 FKSGNWNEYNLNPLTRIHWRASLVPAAAVIPA 564
           F++G  N YNLN LTRI+ RASLVPAAAVIPA
Sbjct: 55  FEAGYRNGYNLNLLTRIYERASLVPAAAVIPA 86


>tr|A8P6U5|A8P6U5_BRUMA Putative uncharacterized protein (Fragment)
           OS=Brugia malayi GN=Bm1_17870 PE=4 SV=1
          Length = 62

 Score = 91.3 bits (225), Expect = 3e-17
 Identities = 41/57 (71%), Positives = 49/57 (85%)
 Frame = -2

Query: 421 WVICAPAAFLGCGSRFSGSLSGIEP*FSVTRHHHGRPLSYHRKLIGQKFE*SIAGAK 251
           WVICAPAAFLGCGSRFSGSLSG+EP FSVTR++HGR ++YHRKLI Q  +  +AG +
Sbjct: 1   WVICAPAAFLGCGSRFSGSLSGVEPLFSVTRYNHGRHINYHRKLIRQTLDRYVAGTR 57


>tr|B6A8G9|B6A8G9_HELAM CHK1 checkpoint-like protein (Fragment)
           OS=Helicoverpa armigera PE=2 SV=1
          Length = 47

 Score = 80.5 bits (197), Expect = 6e-14
 Identities = 39/44 (88%), Positives = 39/44 (88%)
 Frame = +3

Query: 315 LPWW*RVTEN*GSIPEREPEKRLPHPRKAAGAQITQSRHGEVVT 446
           LPW  RVT N GSIPEREPEKRLPHPRKAAGAQIT SRHGEVVT
Sbjct: 4   LPWLSRVTGNQGSIPEREPEKRLPHPRKAAGAQITHSRHGEVVT 47


>tr|Q28EK6|Q28EK6_XENTR CHK1 checkpoint homolog (S. pombe)
           OS=Xenopus tropicalis GN=chek1 PE=2 SV=1
          Length = 231

 Score = 68.2 bits (165), Expect = 3e-10
 Identities = 32/36 (88%), Positives = 33/36 (91%)
 Frame = +3

Query: 366 EPEKRLPHPRKAAGAQITQSRHGEVVTINNNTGLFQ 473
           EPEKRLPHPRKAAGAQIT SR GEVVT NNNTGLF+
Sbjct: 187 EPEKRLPHPRKAAGAQITHSRRGEVVTKNNNTGLFR 222


>tr|B5M6G9|B5M6G9_ORNHU Tumor differentially expressed protein
           OS=Ornithoctonus huwena PE=4 SV=1
          Length = 77

 Score = 65.9 bits (159), Expect = 2e-09
 Identities = 32/37 (86%), Positives = 33/37 (89%)
 Frame = +2

Query: 260 GDASFKFLPYQLSMVG*RPTMVVTGDGELGFDSGEGA 370
           GDASFK LPYQLSMVG  PTMVVTG+GE GFDSGEGA
Sbjct: 41  GDASFKCLPYQLSMVGYAPTMVVTGNGESGFDSGEGA 77


>tr|A8NQF6|A8NQF6_BRUMA Putative uncharacterized protein OS=Brugia
           malayi GN=Bm1_07595 PE=4 SV=1
          Length = 128

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 28/36 (77%), Positives = 31/36 (86%)
 Frame = +3

Query: 366 EPEKRLPHPRKAAGAQITQSRHGEVVTINNNTGLFQ 473
           EPEKRLPHPRKAAGAQIT S++ EVVT NN T LF+
Sbjct: 34  EPEKRLPHPRKAAGAQITHSQNEEVVTKNNETVLFE 69



 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 44/104 (42%), Positives = 54/104 (51%)
 Frame = +1

Query: 253 WRRRCFIQISALSTFDGRIEAYHXXXXXXXXXXXXXXXXXXNGYHIQGRQQARKLPNPDT 432
           +RRR + Q+SALSTFDG + AYH                   G  I   Q    +   + 
Sbjct: 8   YRRRIY-QVSALSTFDGSLCAYHGCNGEPEKRLPHPRKAA--GAQITHSQNEEVVTKNNE 64

Query: 433 GR**Q*ITILGFFKSGNWNEYNLNPLTRIHWRASLVPAAAVIPA 564
                  T+L  F++G  N YNLN LTRI+ RASLVPAAAVIPA
Sbjct: 65  -------TVL--FEAGYRNGYNLNLLTRIYERASLVPAAAVIPA 99


>tr|A8NVW9|A8NVW9_BRUMA Putative uncharacterized protein OS=Brugia
           malayi GN=Bm1_11030 PE=4 SV=1
          Length = 114

 Score = 57.0 bits (136), Expect = 7e-07
 Identities = 44/104 (42%), Positives = 53/104 (50%)
 Frame = +1

Query: 253 WRRRCFIQISALSTFDGRIEAYHXXXXXXXXXXXXXXXXXXNGYHIQGRQQARKLPNPDT 432
           +RRR + Q+SALSTFDG + AYH                     H Q  +   K  N +T
Sbjct: 8   YRRRIY-QVSALSTFDGSLCAYHGCNGRANT-------------HSQNEEVVTK--NNET 51

Query: 433 GR**Q*ITILGFFKSGNWNEYNLNPLTRIHWRASLVPAAAVIPA 564
                       F++G  N YNLN LTRI+ RASLVPAAAVIPA
Sbjct: 52  V----------LFEAGYRNGYNLNLLTRIYERASLVPAAAVIPA 85


>tr|A8JJG4|A8JJG4_CHLRE Predicted protein OS=Chlamydomonas
           reinhardtii GN=CHLREDRAFT_155068 PE=4 SV=1
          Length = 87

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = -3

Query: 567 WSWNYRGCWHQTCPPMDPR 511
           WSWNYRGCWHQTCPPMDPR
Sbjct: 69  WSWNYRGCWHQTCPPMDPR 87


>tr|B8A8W0|B8A8W0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_02128 PE=4 SV=1
          Length = 67

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 22/26 (84%), Positives = 23/26 (88%)
 Frame = +3

Query: 225 HDNSTNRTALAPAMLHSNFCPINFRW 302
           HDNST+RTAL PA  HSNFCPINFRW
Sbjct: 3   HDNSTDRTALVPATHHSNFCPINFRW 28