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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK951989
Clone id TST38A01NGRL0012_O03
Library
Length 652
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0012_O03. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
TCCAGCTCCGGATCATCACCAGAGAGAGCTCAATACGGAAGAGAGAGAAGCAAAGCGGCC
GCATGGGCGTGGTACCAGCGTGGAGGGGCGGCCAGTGGCGGCTCGCTCTGCATACAAGCT
GGCAGCAGCACTGCTCTCATGGTGAGGGGAAAGTATATGCAGAGAATAAGCACAGATGGA
AATAGTAGAGGACATGACAATCAACAAGAGAGTAGTAAAGGAATGGCTCATGTGGAGCAC
AAAGCTAGCAAGTGTAGACGCCTGCCACCTTCGCGCTTCAAGCAGGAGGCAGACAAACTT
GCGGCGGTGAGTCGATGGCGATGCGCCGGCTCTGGTGCTGCTTGTCCACAATCTTTATTT
TCTGATGAAGAAGATCATCAGCTCATGTGTGGTTCATATCATGACACCCCACACTTACTT
GATGCAGCACATGCTGATCACATATTGTATTCCACATCATCATCTAATCTACCTTCGCCA
TCCTCCTCTATTCCACCGCTGCCTTTTCTACATCGCGCCGCGGTGTCGGCAGATGATCCT
CCGCTGCATCACAGTCGCTGGTTGGATAGTCTCCTTGGAACCAGCAACAGGAAGAGTACC
TCCTCATTGTATGTAGACAATGAGTTGGCCTCTTTGATATCCTTCTTTGGGC
■■Homology search results ■■ -
sp_hit_id P62932
Definition sp|P62932|FBX40_MOUSE F-box only protein 40 OS=Mus musculus
Align length 90
Score (bit) 33.1
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951989|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0012_O03, 5'
         (652 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P62932|FBX40_MOUSE F-box only protein 40 OS=Mus musculus GN=F...    33   1.3  
sp|Q6J9G1|STYK1_MOUSE Tyrosine protein-kinase STYK1 OS=Mus muscu...    32   3.8  
sp|Q0VPD2|Y1518_ALCBS UPF0276 protein ABO_1518 OS=Alcanivorax bo...    31   6.5  
sp|Q6J9G0|STYK1_HUMAN Tyrosine protein-kinase STYK1 OS=Homo sapi...    31   6.5  
sp|Q86YZ3|HORN_HUMAN Hornerin OS=Homo sapiens GN=HRNR PE=1 SV=2        30   8.5  

>sp|P62932|FBX40_MOUSE F-box only protein 40 OS=Mus musculus
           GN=Fbxo40 PE=2 SV=1
          Length = 710

 Score = 33.1 bits (74), Expect = 1.3
 Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
 Frame = -1

Query: 289 PPA*SAKVAGVYTC*LCAPHEPFLYYSLVDCHVL--YYFHLCLFSAYTFPSP*EQCCC-- 122
           PPA      G +      P EP +   ++ CH+L    FH+C  S +T   P EQ  C  
Sbjct: 8   PPALHRHCEGCFNRHCHVPVEPSVSCLVISCHLLCGATFHMCKESEHTLLCPLEQVPCLN 67

Query: 121 -QLVCRAS--RHWPPLHAGTTPMRPLCFSL 41
            +  C  S  RH    H    P   +C S+
Sbjct: 68  SEYGCPLSMARHKLAKHLQVCPASVVCCSM 97


>sp|Q6J9G1|STYK1_MOUSE Tyrosine protein-kinase STYK1 OS=Mus musculus
           GN=Styk1 PE=2 SV=2
          Length = 429

 Score = 31.6 bits (70), Expect = 3.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 649 QRRISKRPTHCLHTMRRYSSCCW 581
           +++I KRP+ C H M     CCW
Sbjct: 348 RKKIMKRPSSCSHAMYNIMKCCW 370


>sp|Q0VPD2|Y1518_ALCBS UPF0276 protein ABO_1518 OS=Alcanivorax
           borkumensis (strain SK2 / ATCC 700651 / DSM 11573)
           GN=ABO_1518 PE=3 SV=1
          Length = 299

 Score = 30.8 bits (68), Expect = 6.5
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
 Frame = +2

Query: 413 TYLMQHML------ITYCIPHHHLIYLRHPPLFHRCLFYIAPRCRQM 535
           ++L QH +      ++YC  H HL  L   P     ++Y+A R RQ+
Sbjct: 90  SFLKQHNIRRYTEHLSYCSDHGHLYDLMPIPFTQEAVYYVADRIRQV 136


>sp|Q6J9G0|STYK1_HUMAN Tyrosine protein-kinase STYK1 OS=Homo sapiens
           GN=STYK1 PE=2 SV=3
          Length = 422

 Score = 30.8 bits (68), Expect = 6.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 649 QRRISKRPTHCLHTMRRYSSCCW 581
           +R+I KRP+ C HTM      CW
Sbjct: 341 RRKIMKRPSSCTHTMYSIMKSCW 363


>sp|Q86YZ3|HORN_HUMAN Hornerin OS=Homo sapiens GN=HRNR PE=1 SV=2
          Length = 2850

 Score = 30.4 bits (67), Expect = 8.5
 Identities = 21/74 (28%), Positives = 31/74 (41%)
 Frame = +1

Query: 1    SSSGSSPERAQYGRERSKAAAWAWYQRGGAASGGSLCIQAGSSTALMVRGKYMQRISTDG 180
            SSSG S    Q+G   S +++   Y+ G   + G    ++GS       G      S+ G
Sbjct: 783  SSSGHSSSHGQHGSGTSCSSSCGHYESGSGQASGFGQHESGSGQGYSQHGSASGHFSSQG 842

Query: 181  NSRGHDNQQESSKG 222
               G  + Q SS G
Sbjct: 843  R-HGSTSGQSSSSG 855
tr_hit_id B4TXK9
Definition tr|B4TXK9|B4TXK9_SALSV Putative outer membrane protein OS=Salmonella schwarzengrund (strain CVM19633)
Align length 79
Score (bit) 34.7
E-value 5.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951989|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0012_O03, 5'
         (652 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4TXK9|B4TXK9_SALSV Putative outer membrane protein OS=Salmon...    35   5.2  
tr|B5C8U2|B5C8U2_SALET Putative outer membrane protein OS=Salmon...    35   5.2  
tr|B6MH40|B6MH40_BRAFL Putative uncharacterized protein OS=Branc...    34   6.7  
tr|A4XQF6|A4XQF6_PSEMY FMN-dependent alpha-hydroxy acid dehydrog...    34   6.8  
tr|Q9NES7|Q9NES7_CAEEL Protein Y39B6A.1, confirmed by transcript...    34   6.8  
tr|B1EKJ8|B1EKJ8_9ESCH Putative uncharacterized protein OS=Esche...    34   8.9  
tr|A2YU54|A2YU54_ORYSI Putative uncharacterized protein OS=Oryza...    34   8.9  
tr|B6K928|B6K928_TOXGO 26S proteasome non-ATPase regulatory subu...    34   8.9  
tr|A7T0I7|A7T0I7_NEMVE Predicted protein (Fragment) OS=Nematoste...    34   8.9  

>tr|B4TXK9|B4TXK9_SALSV Putative outer membrane protein
           OS=Salmonella schwarzengrund (strain CVM19633)
           GN=SeSA_A0177 PE=4 SV=1
          Length = 531

 Score = 34.7 bits (78), Expect = 5.2
 Identities = 18/79 (22%), Positives = 36/79 (45%)
 Frame = +1

Query: 13  SSPERAQYGRERSKAAAWAWYQRGGAASGGSLCIQAGSSTALMVRGKYMQRISTDGNSRG 192
           S+ ++A   R+  + AA   +Q+    +  SL              + + +I+   N RG
Sbjct: 364 SATQQAPVSRDSQRQAAMTQFQQRSHTANASLPAPGTRDAQRKAASQQLNQIARRNNYRG 423

Query: 193 HDNQQESSKGMAHVEHKAS 249
           +DNQ +S++     +H A+
Sbjct: 424 YDNQYDSARRQTAQQHSAT 442


>tr|B5C8U2|B5C8U2_SALET Putative outer membrane protein
           OS=Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480 GN=SeSB_A0365 PE=4 SV=1
          Length = 531

 Score = 34.7 bits (78), Expect = 5.2
 Identities = 18/79 (22%), Positives = 36/79 (45%)
 Frame = +1

Query: 13  SSPERAQYGRERSKAAAWAWYQRGGAASGGSLCIQAGSSTALMVRGKYMQRISTDGNSRG 192
           S+ ++A   R+  + AA   +Q+    +  SL              + + +I+   N RG
Sbjct: 364 SATQQAPVSRDSQRQAAMTQFQQRSHTANASLPAPGTRDAQRKAASQQLNQIARRNNYRG 423

Query: 193 HDNQQESSKGMAHVEHKAS 249
           +DNQ +S++     +H A+
Sbjct: 424 YDNQYDSARRQTAQQHSAT 442


>tr|B6MH40|B6MH40_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_123125 PE=4 SV=1
          Length = 498

 Score = 34.3 bits (77), Expect = 6.7
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +3

Query: 57  GRMGVVPAWRGGQWRLALHTSWQQHCSHGEGKVYAEN 167
           G+  V+PA R    R+  HT+W Q+  HG G+ Y E+
Sbjct: 15  GQASVIPAQRASYRRVCYHTNWSQY-RHGVGQFYPED 50


>tr|A4XQF6|A4XQF6_PSEMY FMN-dependent alpha-hydroxy acid
           dehydrogenase OS=Pseudomonas mendocina (strain ymp)
           GN=Pmen_0804 PE=4 SV=1
          Length = 389

 Score = 34.3 bits (77), Expect = 6.8
 Identities = 22/52 (42%), Positives = 28/52 (53%)
 Frame = +1

Query: 34  YGRERSKAAAWAWYQRGGAASGGSLCIQAGSSTALMVRGKYMQRISTDGNSR 189
           Y RER    AWA Y  GGAA   SL     +   L +RG+ +Q +S  GN+R
Sbjct: 41  YARERMSEQAWA-YLAGGAADELSLADNRAAFERLRLRGRVLQDLS-GGNTR 90


>tr|Q9NES7|Q9NES7_CAEEL Protein Y39B6A.1, confirmed by transcript
           evidence OS=Caenorhabditis elegans GN=Y39B6A.1 PE=1 SV=1
          Length = 735

 Score = 34.3 bits (77), Expect = 6.8
 Identities = 33/147 (22%), Positives = 57/147 (38%)
 Frame = +1

Query: 1   SSSGSSPERAQYGRERSKAAAWAWYQRGGAASGGSLCIQAGSSTALMVRGKYMQRISTDG 180
           SSS SS E  ++  ++  A     + +  A+S  S    + SS++               
Sbjct: 262 SSSSSSSEDEKHHHKKHAAKKHVKHHKKAASSSSSSSSSSSSSSS--------------- 306

Query: 181 NSRGHDNQQESSKGMAHVEHKASKCRRLPPSRFKQEADKLAAVSRWRCAGSGAACPQSLF 360
           +S    ++ E  K    V HK S  ++           K AA S    + S ++   S  
Sbjct: 307 SSSSSSSESEDEKKKKKVHHKKSHGKK---------HHKKAASSSSSSSSSSSSSSSSSS 357

Query: 361 SDEEDHQLMCGSYHDTPHLLDAAHADH 441
           S+ ED +    ++H+     D AH +H
Sbjct: 358 SESEDEKKHAPAHHEHHEHKDGAHHEH 384


>tr|B1EKJ8|B1EKJ8_9ESCH Putative uncharacterized protein
           OS=Escherichia albertii TW07627 GN=ESCAB7627_0172 PE=4
           SV=1
          Length = 373

 Score = 33.9 bits (76), Expect = 8.9
 Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
 Frame = +1

Query: 16  SPERAQYGRERSKAAAWAWYQRGGAASGGSLCIQAG---SSTALMVRGKYMQRISTDGNS 186
           +PERA + R++  A A AWY      +   LC+       +TA  + G+ ++ +     +
Sbjct: 143 NPERATFYRDKPDARALAWY-----LTDSYLCVLLDGHHKATAAALEGRPLKTLVISTAT 197

Query: 187 RGHDNQQESSKGMAHVEHKASKCRRLPPSRFKQEADKLAAVSRWRCAG 330
           R +D QQ          HK     R+P    K  A K   +S W   G
Sbjct: 198 RFNDEQQTLVFPGGEFLHKTELQYRIP----KLTAWKTLPLSAWEILG 241


>tr|A2YU54|A2YU54_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_28864 PE=4 SV=1
          Length = 216

 Score = 33.9 bits (76), Expect = 8.9
 Identities = 25/71 (35%), Positives = 31/71 (43%)
 Frame = +1

Query: 58  AAWAWYQRGGAASGGSLCIQAGSSTALMVRGKYMQRISTDGNSRGHDNQQESSKGMAHVE 237
           AA A      AAS  S    AGS    +V  K+      +GN  G D  Q ++   A  E
Sbjct: 36  AAAAAAAAAAAASAASSTAGAGSRGNNLVLFKWTPMNGANGNGGGGDGDQAAAAAAAAEE 95

Query: 238 HKASKCRRLPP 270
            KA+K RR  P
Sbjct: 96  EKATKRRRYVP 106


>tr|B6K928|B6K928_TOXGO 26S proteasome non-ATPase regulatory subunit
            2, putative OS=Toxoplasma gondii ME49 GN=TGME49_113410
            PE=4 SV=1
          Length = 1091

 Score = 33.9 bits (76), Expect = 8.9
 Identities = 21/59 (35%), Positives = 31/59 (52%)
 Frame = +2

Query: 344  VHNLYFLMKKIISSCVVHIMTPHTYLMQHMLITYCIPHHHLIYLRHPPLFHRCLFYIAP 520
            +H+  FL+  +   C+  IM  HT L  HM  T    +H+L+Y   P +  R LF +AP
Sbjct: 914  LHSDRFLINNVALGCLSVIM--HTCL--HMRTTILGKYHYLLYYLFPAMQPRMLFTVAP 968


>tr|A7T0I7|A7T0I7_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g64214 PE=4 SV=1
          Length = 256

 Score = 33.9 bits (76), Expect = 8.9
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +2

Query: 326 PALVLLVHNLYFLMKKIISSCVVHIMTPHTYLMQHMLITYCIPHHHLIYLRHPPLFHRCL 505
           P  +L  +  Y L+K  I  C++    P+  LM + + +YC+P H++ Y    P    CL
Sbjct: 46  PYCLLKPYIPYCLLKHYIPYCLLKHYIPYCLLMPY-IPSYCLPKHYIPYCLLKPYIPYCL 104

Query: 506 F-YIAPRC 526
             +  P C
Sbjct: 105 LKHYIPYC 112