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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK952007
Clone id TST38A01NGRL0012_O23
Library
Length 564
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0012_O23. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
TTTTTGGCAACAGCAGCAGCAGCAGAGCATCATCTTCATCGTCAGCGGCAGGATCAGAGA
AGAAGGGCAGTTTCTTCCTCGTAGCAGAAAGAGCCCATCGTGAACTCTCTCTGCTTTCAG
TAAACACAATTTATGCTTGCCAGTTTTGTCATTGAACTGATGAGATTTAGGCTTTTGGAG
CTTAAGCTTCACGGAAAGGTGGCATTGGCTAGCCTAGCAAGGGCTAGTTGGTGCTAATTC
AAGTTGTCACGACGGCTTTGTCCTTCAGAGCGAAGCCACATCCTGGGCATAACGAGACAT
GCAAGAGAAGTCTGTTTAGGTCTCTCTTGAGCTCACCTTCAGTGCACGGTGGTCGTGGAG
CCCTACCATCTGAGGGAGGACATCCTTCTGACCTAACATATTTGGCTGGTGGAGGACAAT
CCCTTGACTTTATTGCCTCTCTCACTCCTGCCTACTTCTCTTTGAAGAGGTGTGAGTGAG
TGAAGGCCCAGCATCATGCGGACAATTCAGCGTGTAGAAACTGTTCTGTCCATTAATCAG
TATGATGCTGAGAAATGGGGGAAG
■■Homology search results ■■ -
sp_hit_id P08103
Definition sp|P08103|HCK_MOUSE Tyrosine-protein kinase HCK OS=Mus musculus
Align length 22
Score (bit) 30.8
E-value 4.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952007|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0012_O23, 5'
         (564 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P08103|HCK_MOUSE Tyrosine-protein kinase HCK OS=Mus musculus ...    31   4.8  
sp|P39393|YJIV_ECOLI Putative uncharacterized protein yjiV OS=Es...    30   8.2  
sp|Q6PEV3|WIPF2_MOUSE WAS/WASL-interacting protein family member...    30   8.2  
sp|Q8TF74|WIPF2_HUMAN WAS/WASL-interacting protein family member...    30   8.2  
sp|Q8VRZ2|HPPA_OCHA4 Pyrophosphate-energized proton pump OS=Ochr...    30   8.2  
sp|Q8BID8|FXL14_MOUSE F-box/LRR-repeat protein 14 OS=Mus musculu...    30   8.3  
sp|Q8N1E6|FXL14_HUMAN F-box/LRR-repeat protein 14 OS=Homo sapien...    30   8.3  
sp|Q17R01|FXL14_BOVIN F-box/LRR-repeat protein 14 OS=Bos taurus ...    30   8.3  

>sp|P08103|HCK_MOUSE Tyrosine-protein kinase HCK OS=Mus musculus
           GN=Hck PE=1 SV=4
          Length = 524

 Score = 30.8 bits (68), Expect = 4.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 385 GCPPSDGRAPRPPCTEGELKRD 320
           GCP S+GRAPR  C +    RD
Sbjct: 11  GCPRSEGRAPRMGCVKSRFLRD 32


>sp|P39393|YJIV_ECOLI Putative uncharacterized protein yjiV
           OS=Escherichia coli (strain K12) GN=yjiV PE=5 SV=3
          Length = 906

 Score = 30.0 bits (66), Expect = 8.2
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
 Frame = +2

Query: 167 LGFWSLSFTERWHWLA*QG-----LVGANSSCHDGFVLQSEATSWA 289
           +G+W ++F+ +WH+   +      LV    +C +G V  SE  SWA
Sbjct: 852 MGYWRINFSSQWHYFDFRDDVSFQLVKMAQACKEGNVANSE-ESWA 896


>sp|Q6PEV3|WIPF2_MOUSE WAS/WASL-interacting protein family member 2
           OS=Mus musculus GN=Wipf2 PE=2 SV=1
          Length = 440

 Score = 30.0 bits (66), Expect = 8.2
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -3

Query: 427 SRDCPPPAKYVRSEGC-PPSDGRAPRPP 347
           +RD PPP    R  G  PPS G+ P PP
Sbjct: 336 ARDAPPPPPPYRMHGSEPPSRGKPPPPP 363


>sp|Q8TF74|WIPF2_HUMAN WAS/WASL-interacting protein family member 2
           OS=Homo sapiens GN=WIPF2 PE=1 SV=1
          Length = 440

 Score = 30.0 bits (66), Expect = 8.2
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -3

Query: 427 SRDCPPPAKYVRSEGC-PPSDGRAPRPP 347
           +RD PPP    R  G  PPS G+ P PP
Sbjct: 336 ARDAPPPPPPYRMHGSEPPSRGKPPPPP 363


>sp|Q8VRZ2|HPPA_OCHA4 Pyrophosphate-energized proton pump
           OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 /
           NCTC 12168) GN=hppA PE=3 SV=2
          Length = 718

 Score = 30.0 bits (66), Expect = 8.2
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 351 GRGALPSEGGHPSDLTYLAGGGQSLDFIASLTPAYFSL 464
           G GAL     + +DL Y A  GQ+  + A + P  F L
Sbjct: 483 GLGALVLFAAYSNDLAYFAANGQTYPYFADMGPVSFDL 520


>sp|Q8BID8|FXL14_MOUSE F-box/LRR-repeat protein 14 OS=Mus musculus
           GN=Fbxl14 PE=2 SV=1
          Length = 400

 Score = 30.0 bits (66), Expect = 8.3
 Identities = 27/86 (31%), Positives = 33/86 (38%), Gaps = 7/86 (8%)
 Frame = +1

Query: 106 SLCFQ*TQFMLASFVIELMRFRLLELKLHGKVALASLARASWC*FKLS-------RRLCP 264
           SLC Q T   L      L    +LEL     +    L   +W   +L        R L  
Sbjct: 125 SLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSD 184

Query: 265 SERSHILGITRHAREVCLGLS*AHLQ 342
               H+ G+TR A E CLGL    LQ
Sbjct: 185 VGIGHLAGMTRSAAEGCLGLEQLTLQ 210


>sp|Q8N1E6|FXL14_HUMAN F-box/LRR-repeat protein 14 OS=Homo sapiens
           GN=FBXL14 PE=2 SV=1
          Length = 418

 Score = 30.0 bits (66), Expect = 8.3
 Identities = 27/86 (31%), Positives = 33/86 (38%), Gaps = 7/86 (8%)
 Frame = +1

Query: 106 SLCFQ*TQFMLASFVIELMRFRLLELKLHGKVALASLARASWC*FKLS-------RRLCP 264
           SLC Q T   L      L    +LEL     +    L   +W   +L        R L  
Sbjct: 125 SLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSD 184

Query: 265 SERSHILGITRHAREVCLGLS*AHLQ 342
               H+ G+TR A E CLGL    LQ
Sbjct: 185 VGIGHLAGMTRSAAEGCLGLEQLTLQ 210


>sp|Q17R01|FXL14_BOVIN F-box/LRR-repeat protein 14 OS=Bos taurus
           GN=FBXL14 PE=2 SV=1
          Length = 400

 Score = 30.0 bits (66), Expect = 8.3
 Identities = 27/86 (31%), Positives = 33/86 (38%), Gaps = 7/86 (8%)
 Frame = +1

Query: 106 SLCFQ*TQFMLASFVIELMRFRLLELKLHGKVALASLARASWC*FKLS-------RRLCP 264
           SLC Q T   L      L    +LEL     +    L   +W   +L        R L  
Sbjct: 125 SLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSD 184

Query: 265 SERSHILGITRHAREVCLGLS*AHLQ 342
               H+ G+TR A E CLGL    LQ
Sbjct: 185 VGIGHLAGMTRSAAEGCLGLEQLTLQ 210
tr_hit_id A8HUV4
Definition tr|A8HUV4|A8HUV4_CHLRE Predicted protein OS=Chlamydomonas reinhardtii
Align length 24
Score (bit) 34.7
E-value 3.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952007|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0012_O23, 5'
         (564 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8HUV4|A8HUV4_CHLRE Predicted protein OS=Chlamydomonas reinha...    35   3.7  

>tr|A8HUV4|A8HUV4_CHLRE Predicted protein OS=Chlamydomonas
           reinhardtii GN=CHLREDRAFT_188099 PE=4 SV=1
          Length = 55

 Score = 34.7 bits (78), Expect = 3.7
 Identities = 16/24 (66%), Positives = 16/24 (66%)
 Frame = +3

Query: 348 GGRGALPSEGGHPSDLTYLAGGGQ 419
           GGRGA PS GG P D    AGGGQ
Sbjct: 32  GGRGAAPSCGGKPKDALSKAGGGQ 55