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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK952017
Clone id TST38A01NGRL0012_P09
Library
Length 654
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0012_P09. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CATCATCCTCCTTTCTCGCTCCTAGGATAAATCCTTTCTTGCAAGCAGGTCATCATGCGT
TGGCTGGATTATTGGCACCAGATCTTTCCTATCTTCAGGGGAAGGGCAAGCTTTTGCGCA
GTAGTTATCCCAATATGATGAATTACGATGCTTTTATATCGGCTTCGGCTTCGACAGCGT
CAATGTGTTCTAGTGTTTTGGATGTACAAGCCAAAGCAAATTCCTATGTGAATTGTGCAA
CAGGGGATTTACAACATCCATATGCATCTGCAAATATGGCAAAAGAAGGTGGGCATTGCA
CCGTCGCGGGGCTTTCTTCGACGTCAATAGAGAGCTTCCTTATGGACGATGAGGAGCACA
ATCCAAAATCATCTCACAGTGCGATTGATTCATGGCTGGCTTTTGATGGGGGAGCTACAG
CTAATCTCTCTCCAACAGTTGATTTTACTAGAATAGCTTCATGAACTTGTTCCTTACTGT
AGAACTTTAGAACATTAACAGCCTCGTAACTCTATAGTTTAGTATGGCTTGTACAGTTTT
TATTAAGAGCAAGTCAATCCTTGTCTAGAACTGTAGAGGCATATACCTAAACGAGCTTTA
AGTTCCTGTGACATAAACCTCAAAATACAATTTGTAACATGCCATTCAACTGGC
■■Homology search results ■■ -
sp_hit_id O74935
Definition sp|O74935|ACOX2_YARLI Acyl-coenzyme A oxidase 2 OS=Yarrowia lipolytica
Align length 77
Score (bit) 31.6
E-value 3.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952017|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0012_P09, 5'
         (654 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O74935|ACOX2_YARLI Acyl-coenzyme A oxidase 2 OS=Yarrowia lipo...    32   3.8  
sp|Q58374|Y964_METJA Uncharacterized protein MJ0964 OS=Methanoca...    30   8.5  

>sp|O74935|ACOX2_YARLI Acyl-coenzyme A oxidase 2 OS=Yarrowia
           lipolytica GN=POX2 PE=1 SV=1
          Length = 700

 Score = 31.6 bits (70), Expect = 3.8
 Identities = 22/77 (28%), Positives = 38/77 (49%)
 Frame = +3

Query: 225 YVNCATGDLQHPYASANMAKEGGHCTVAGLSSTSIESFLMDDEEHNPKSSHSAIDSWLAF 404
           +++   GDL+  Y   +M + G    +AGL +T+I  +  + +E    + H A   W  +
Sbjct: 144 WISKGAGDLRKFYGCFSMTELGHGSNLAGLETTAI--YDEETDEFIINTPHIAATKW--W 199

Query: 405 DGGATANLSPTVDFTRI 455
            GGA    + TV F R+
Sbjct: 200 IGGAAHTATHTVVFARL 216


>sp|Q58374|Y964_METJA Uncharacterized protein MJ0964
           OS=Methanocaldococcus jannaschii GN=MJ0964 PE=3 SV=1
          Length = 680

 Score = 30.4 bits (67), Expect = 8.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 322 VEESPATVQCPPSFAIFADAYGCCK 248
           VEE  +T+  PP +  F D YGC +
Sbjct: 653 VEEYDSTIVIPPDYTAFVDKYGCLR 677
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952017|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0012_P09, 5'
         (654 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******