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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK952060
Clone id TST38A01NGRL0013_B06
Library
Length 164
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0013_B06. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
AGATTGCGAAGCAGGTCGAACTCAATGCAAGGGGTCCAGCCTTTTCGGACCATGAAGTCC
ACCTGCTTCGCAATCTGCTCACTTGACAAAGGCGGCAAGTAGGACAGAGTCTCGAAGCAG
GTGGACTGGATGGCCTTAAAAGGCTGCGCCCCTTGCATTGAGTT
■■Homology search results ■■ -
sp_hit_id O65194
Definition sp|O65194|RBS_MEDSA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa
Align length 35
Score (bit) 63.2
E-value 4.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952060|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0013_B06, 5'
         (164 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O65194|RBS_MEDSA Ribulose bisphosphate carboxylase small chai...    63   4e-10
sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chai...    63   5e-10
sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chai...    62   7e-10
sp|Q02980|RBS_MALSP Ribulose bisphosphate carboxylase small chai...    62   1e-09
sp|P00868|RBS1_PEA Ribulose bisphosphate carboxylase small chain...    62   1e-09
sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chai...    61   2e-09
sp|P29684|RBS_HEVBR Ribulose bisphosphate carboxylase small chai...    61   2e-09
sp|O22077|RBS_FAGCR Ribulose bisphosphate carboxylase small chai...    60   4e-09
sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai...    59   6e-09
sp|P07689|RBS3_PEA Ribulose bisphosphate carboxylase small chain...    59   6e-09
sp|P00869|RBS2_PEA Ribulose bisphosphate carboxylase small chain...    59   6e-09
sp|Q42915|RBS_MANES Ribulose bisphosphate carboxylase small chai...    58   1e-08
sp|P08474|RBS_CUCSA Ribulose bisphosphate carboxylase small chai...    58   1e-08
sp|P08475|RBS2_CHLRE Ribulose bisphosphate carboxylase small cha...    58   1e-08
sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chai...    58   2e-08
sp|P05348|RBS_MAIZE Ribulose bisphosphate carboxylase small chai...    58   2e-08
sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai...    58   2e-08
sp|Q41373|RBS_SACHY Ribulose bisphosphate carboxylase small chai...    57   2e-08
sp|Q38693|RBS7_ACECL Ribulose bisphosphate carboxylase small cha...    57   2e-08
sp|Q38692|RBS6_ACECL Ribulose bisphosphate carboxylase small cha...    57   2e-08
sp|P16133|RBS5_ACECL Ribulose bisphosphate carboxylase small cha...    57   2e-08
sp|P16132|RBS4_ACECL Ribulose bisphosphate carboxylase small cha...    57   2e-08
sp|P16131|RBS3_ACECL Ribulose bisphosphate carboxylase small cha...    57   2e-08
sp|P00865|RBS1_SOYBN Ribulose bisphosphate carboxylase small cha...    57   2e-08
sp|P26985|RBS_BATOE Ribulose bisphosphate carboxylase small chai...    57   3e-08
sp|P12468|RBS4_SOYBN Ribulose bisphosphate carboxylase small cha...    57   3e-08
sp|P00871|RBS1_WHEAT Ribulose bisphosphate carboxylase small cha...    57   3e-08
sp|P00873|RBS1_CHLRE Ribulose bisphosphate carboxylase small cha...    57   3e-08
sp|Q42822|RBS_GLYTO Ribulose bisphosphate carboxylase small chai...    57   4e-08
sp|Q42823|RBS_GLYTA Ribulose bisphosphate carboxylase small chai...    57   4e-08

>sp|O65194|RBS_MEDSA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Medicago sativa PE=2 SV=1
          Length = 180

 Score = 63.2 bits (152), Expect = 4e-10
 Identities = 24/35 (68%), Positives = 33/35 (94%)
 Frame = -1

Query: 116 FETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFDL 12
           FETLSYLPPL+ EQ+AK+V++++RKGW PC+EF+L
Sbjct: 69  FETLSYLPPLTEEQLAKEVEYLIRKGWIPCLEFEL 103


>sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1
          Length = 183

 Score = 62.8 bits (151), Expect = 5e-10
 Identities = 25/35 (71%), Positives = 32/35 (91%)
 Frame = -1

Query: 116 FETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFDL 12
           FETLSYLPPLSSE +AK+VD+++RK W PC+EF+L
Sbjct: 72  FETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFEL 106


>sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1
          Length = 180

 Score = 62.4 bits (150), Expect = 7e-10
 Identities = 26/49 (53%), Positives = 38/49 (77%)
 Frame = -1

Query: 158 MQGAQPFKAIQSTCFETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFDL 12
           MQ  +P+  ++   FETLSYLPPLS + +AKQ+D++++ GW PCIEFD+
Sbjct: 59  MQVWEPYNNLK---FETLSYLPPLSQDALAKQIDYVIKSGWAPCIEFDV 104



 Score = 30.0 bits (66), Expect = 3.8
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = +1

Query: 10  SRSNSMQGVQPFRTMKSTCFAICSLDKGGK*DRVSKQVDWMALKGCAPCIE 162
           SR + MQ  +P+  +K   F   S       D ++KQ+D++   G APCIE
Sbjct: 54  SRVSCMQVWEPYNNLK---FETLSYLPPLSQDALAKQIDYVIKSGWAPCIE 101


>sp|Q02980|RBS_MALSP Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1
          Length = 183

 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 24/35 (68%), Positives = 32/35 (91%)
 Frame = -1

Query: 116 FETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFDL 12
           FETLSYLPPLS+E +AK+VD+++RK W PC+EF+L
Sbjct: 72  FETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFEL 106


>sp|P00868|RBS1_PEA Ribulose bisphosphate carboxylase small chain,
           chloroplastic (Fragment) OS=Pisum sativum PE=2 SV=1
          Length = 136

 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 23/37 (62%), Positives = 34/37 (91%)
 Frame = -1

Query: 116 FETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFDLLR 6
           FETLSYLPPL+ +Q+ K+V++++RKGW PC+EF+LL+
Sbjct: 25  FETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELLK 61


>sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1
          Length = 178

 Score = 61.2 bits (147), Expect = 2e-09
 Identities = 23/35 (65%), Positives = 32/35 (91%)
 Frame = -1

Query: 116 FETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFDL 12
           FETLSYLPPL+ EQ+ K+V++++RKGW PC+EF+L
Sbjct: 67  FETLSYLPPLTDEQLLKEVEYLLRKGWVPCVEFEL 101


>sp|P29684|RBS_HEVBR Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Hevea brasiliensis GN=RBCS PE=2 SV=1
          Length = 183

 Score = 61.2 bits (147), Expect = 2e-09
 Identities = 23/35 (65%), Positives = 33/35 (94%)
 Frame = -1

Query: 116 FETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFDL 12
           +ETLSYLPPL+ EQ+AK+V++++RKGW PC+EF+L
Sbjct: 71  YETLSYLPPLTREQLAKEVEYLLRKGWVPCLEFEL 105


>sp|O22077|RBS_FAGCR Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1
          Length = 182

 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 23/35 (65%), Positives = 31/35 (88%)
 Frame = -1

Query: 116 FETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFDL 12
           FETLSYLPPLS E +AKQ+++++ KGW PC+EF+L
Sbjct: 71  FETLSYLPPLSIESLAKQIEYLILKGWIPCLEFEL 105


>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1
          Length = 182

 Score = 59.3 bits (142), Expect = 6e-09
 Identities = 25/35 (71%), Positives = 32/35 (91%)
 Frame = -1

Query: 116 FETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFDL 12
           FETLSYLPPLSSEQ+AK+VD+++RK   PC+EF+L
Sbjct: 71  FETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFEL 105


>sp|P07689|RBS3_PEA Ribulose bisphosphate carboxylase small chain
           3A, chloroplastic OS=Pisum sativum GN=RBCS-3A PE=3 SV=1
          Length = 180

 Score = 59.3 bits (142), Expect = 6e-09
 Identities = 22/35 (62%), Positives = 32/35 (91%)
 Frame = -1

Query: 116 FETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFDL 12
           FETLSYLPPL+ +Q+ K+V++++RKGW PC+EF+L
Sbjct: 69  FETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFEL 103
tr_hit_id Q43110
Definition tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata
Align length 44
Score (bit) 69.7
E-value 7.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952060|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0013_B06, 5'
         (164 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c...    70   7e-11
tr|Q7DM38|Q7DM38_PHAVU Ribulose bisphosphate carboxylase small c...    64   4e-09
tr|Q43874|Q43874_PHAVU Ribulose bisphosphate carboxylase small c...    64   4e-09
tr|B7FHB2|B7FHB2_MEDTR Putative uncharacterized protein OS=Medic...    64   5e-09
tr|A7Q6D7|A7Q6D7_VITVI Ribulose bisphosphate carboxylase small c...    63   8e-09
tr|Q9SBJ7|Q9SBJ7_PHAVU Ribulose bisphosphate carboxylase small c...    62   2e-08
tr|Q43115|Q43115_9ROSA Ribulose bisphosphate carboxylase small c...    62   2e-08
tr|A7Y7F5|A7Y7F5_CHLPY Ribulose bisphosphate carboxylase small c...    62   2e-08
tr|A9NXP2|A9NXP2_PICSI Ribulose bisphosphate carboxylase small c...    61   2e-08
tr|Q9ZP07|Q9ZP07_CICAR Ribulose bisphosphate carboxylase small c...    61   3e-08
tr|Q5VBK1|Q5VBK1_DUNTE Ribulose bisphosphate carboxylase small c...    61   3e-08
tr|Q5VBK0|Q5VBK0_DUNTE Ribulose bisphosphate carboxylase small c...    61   3e-08
tr|A9PI67|A9PI67_POPTR Ribulose bisphosphate carboxylase small c...    61   3e-08
tr|Q9TLH3|Q9TLH3_MANES Ribulose bisphosphate carboxylase small c...    60   4e-08
tr|Q9T4H0|Q9T4H0_MANES Ribulose bisphosphate carboxylase small c...    60   4e-08
tr|Q64FQ1|Q64FQ1_FAGSY Ribulose bisphosphate carboxylase small c...    60   7e-08
tr|Q5I8Y4|Q5I8Y4_9FABA Ribulose bisphosphate carboxylase small c...    60   7e-08
tr|Q9ZRA1|Q9ZRA1_9CHLO Ribulose bisphosphate carboxylase small c...    59   9e-08
tr|Q96360|Q96360_BETVE Ribulose bisphosphate carboxylase small c...    59   9e-08
tr|B3VSA1|B3VSA1_9CHLO Chloroplast ribulose 1,5-bisphosphate car...    59   9e-08
tr|Q68BL0|Q68BL0_NANBA Ribulose bisphosphate carboxylase small c...    59   1e-07
tr|Q68BK9|Q68BK9_NANBA Ribulose bisphosphate carboxylase small c...    59   1e-07
tr|Q9XQB5|Q9XQB5_PHAAU Ribulose bisphosphate carboxylase small c...    59   2e-07
tr|O24574|O24574_MAIZE Ribulose bisphosphate carboxylase small c...    59   2e-07
tr|B7ZYT6|B7ZYT6_MAIZE Putative uncharacterized protein OS=Zea m...    59   2e-07
tr|B7FMC2|B7FMC2_MEDTR Putative uncharacterized protein OS=Medic...    59   2e-07
tr|Q84U91|Q84U91_VOLCA Ribulose bisphosphate carboxylase small c...    58   2e-07
tr|Q3LFQ4|Q3LFQ4_PANGI Ribulose bisphosphate carboxylase small c...    58   2e-07
tr|A9T9D5|A9T9D5_PHYPA Ribulose bisphosphate carboxylase small c...    58   2e-07
tr|A8JGP8|A8JGP8_CHLRE Ribulose bisphosphate carboxylase small c...    58   2e-07

>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
           chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
          Length = 174

 Score = 69.7 bits (169), Expect = 7e-11
 Identities = 30/44 (68%), Positives = 38/44 (86%)
 Frame = -1

Query: 140 FKAIQSTCFETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFDLL 9
           +K   +  FETLSYLPPL+++QIAKQV++MVRKGWTPCIEFD +
Sbjct: 57  WKPYDNKKFETLSYLPPLTNDQIAKQVEYMVRKGWTPCIEFDTI 100


>tr|Q7DM38|Q7DM38_PHAVU Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Phaseolus vulgaris GN=rbcS PE=2 SV=1
          Length = 135

 Score = 63.9 bits (154), Expect = 4e-09
 Identities = 26/49 (53%), Positives = 38/49 (77%)
 Frame = -1

Query: 158 MQGAQPFKAIQSTCFETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFDL 12
           +Q  Q +  +    FETLSYLPPL+ +Q+AK+VD+++RKGW PC+EF+L
Sbjct: 10  VQCIQVWPTVGKKKFETLSYLPPLTKQQLAKEVDYLLRKGWVPCLEFEL 58


>tr|Q43874|Q43874_PHAVU Ribulose bisphosphate carboxylase small
           chain OS=Phaseolus vulgaris GN=rbcS PE=2 SV=1
          Length = 180

 Score = 63.9 bits (154), Expect = 4e-09
 Identities = 26/49 (53%), Positives = 38/49 (77%)
 Frame = -1

Query: 158 MQGAQPFKAIQSTCFETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFDL 12
           +Q  Q +  +    FETLSYLPPL+ +Q+AK+VD+++RKGW PC+EF+L
Sbjct: 55  VQCIQVWPTVGKKKFETLSYLPPLTKQQLAKEVDYLLRKGWVPCLEFEL 103


>tr|B7FHB2|B7FHB2_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 180

 Score = 63.5 bits (153), Expect = 5e-09
 Identities = 24/35 (68%), Positives = 33/35 (94%)
 Frame = -1

Query: 116 FETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFDL 12
           FETLSYLPPL+ EQ+AK+V++++RKGW PC+EF+L
Sbjct: 69  FETLSYLPPLTEEQLAKEVEYLIRKGWVPCLEFEL 103


>tr|A7Q6D7|A7Q6D7_VITVI Ribulose bisphosphate carboxylase small
           chain OS=Vitis vinifera GN=GSVIVT00031354001 PE=3 SV=1
          Length = 169

 Score = 62.8 bits (151), Expect = 8e-09
 Identities = 25/39 (64%), Positives = 33/39 (84%)
 Frame = -1

Query: 131 IQSTCFETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFD 15
           I +  FETLSYLPPLS + IAK++D+M++KGW PC+EFD
Sbjct: 54  INNKKFETLSYLPPLSDDSIAKEIDYMLKKGWIPCLEFD 92


>tr|Q9SBJ7|Q9SBJ7_PHAVU Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Phaseolus vulgaris GN=rbcS2 PE=3
           SV=1
          Length = 101

 Score = 61.6 bits (148), Expect = 2e-08
 Identities = 25/47 (53%), Positives = 36/47 (76%)
 Frame = -1

Query: 158 MQGAQPFKAIQSTCFETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEF 18
           +Q  Q +  +    FETLSYLPPL+ +Q+AK+VD+++RKGW PC+EF
Sbjct: 55  VQCIQVWPTVGKKKFETLSYLPPLTKQQLAKEVDYLLRKGWVPCLEF 101


>tr|Q43115|Q43115_9ROSA Ribulose bisphosphate carboxylase small
           chain OS=Malus x domestica x Pyrus communis GN=rbcS PE=2
           SV=1
          Length = 179

 Score = 61.6 bits (148), Expect = 2e-08
 Identities = 24/35 (68%), Positives = 32/35 (91%)
 Frame = -1

Query: 116 FETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFDL 12
           FETLSYLPPLS+E +AK+VD+++RK W PC+EF+L
Sbjct: 68  FETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFEL 102


>tr|A7Y7F5|A7Y7F5_CHLPY Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Chlorella pyrenoidosa GN=rbcS PE=2
           SV=1
          Length = 82

 Score = 61.6 bits (148), Expect = 2e-08
 Identities = 25/41 (60%), Positives = 33/41 (80%)
 Frame = -1

Query: 140 FKAIQSTCFETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEF 18
           +K + +  FET SYLPPLS +QIA+QVD++V  GWTPC+EF
Sbjct: 2   WKPVNNKFFETFSYLPPLSGDQIARQVDYIVLNGWTPCLEF 42


>tr|A9NXP2|A9NXP2_PICSI Ribulose bisphosphate carboxylase small
           chain OS=Picea sitchensis PE=2 SV=1
          Length = 188

 Score = 61.2 bits (147), Expect = 2e-08
 Identities = 24/44 (54%), Positives = 33/44 (75%)
 Frame = -1

Query: 146 QPFKAIQSTCFETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFD 15
           Q +  I +  +ETLSYLPPLS E + K++D+M+ KGW PC+EFD
Sbjct: 66  QVWPPINNRKYETLSYLPPLSQESLVKEIDYMISKGWVPCLEFD 109


>tr|Q9ZP07|Q9ZP07_CICAR Ribulose bisphosphate carboxylase small
           chain OS=Cicer arietinum PE=2 SV=1
          Length = 181

 Score = 60.8 bits (146), Expect = 3e-08
 Identities = 23/35 (65%), Positives = 32/35 (91%)
 Frame = -1

Query: 116 FETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFDL 12
           FETLSYLPPL+ EQ+ K+V++++RKGW PC+EF+L
Sbjct: 70  FETLSYLPPLTEEQLLKEVEYLLRKGWVPCLEFEL 104