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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK952062
Clone id TST38A01NGRL0013_B08
Library
Length 501
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0013_B08. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GGGTGCCATTGCGATAACAAGCGATGTTCTTAATCTTTTTGTGAGCGAATCGTCAACACC
ATCAGGGCCTGTTGGTGCTTTGTAGAGTAAAGAGAAAGGGTGGTGCAGTACACATTGTAT
GGGGGCTCAGTGTACAAAATAGATCTCATTGCTAGAAAGCGCTTTTGATGGGCACCCGAG
GGACACTCTGCTGCCTTGAAGCTGTTTTTCGTGGTCTGCTGACAGCACCTGGGGACGACT
GTGCATATCTGACCACTTTATGGACTGGACATGCTGATTGGCCTAATAGACAGAGAAATG
CATTCCTGTCAGTTGCCTTTATTTATGATGGTTTTGGTTACCAGCGTTCTTGCTCATTCT
GTAGCTTGCATTATGCCATTGATTTGTTTAAATGAAACAAAGGTTACATCAATACTAAGC
CTATGCTATTTCCTTTGATGTATCAGATGGCATTATGAAATAGAGACATTCATTTTTCCC
AAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q9UJW3
Definition sp|Q9UJW3|DNM3L_HUMAN DNA (cytosine-5)-methyltransferase 3-like OS=Homo sapiens
Align length 23
Score (bit) 29.6
E-value 7.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952062|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0013_B08, 5'
         (480 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9UJW3|DNM3L_HUMAN DNA (cytosine-5)-methyltransferase 3-like ...    30   7.4  
sp|Q1LZ53|DNM3A_RAT DNA (cytosine-5)-methyltransferase 3A OS=Rat...    29   9.6  
sp|O88508|DNM3A_MOUSE DNA (cytosine-5)-methyltransferase 3A OS=M...    29   9.6  
sp|Q9Y6K1|DNM3A_HUMAN DNA (cytosine-5)-methyltransferase 3A OS=H...    29   9.6  
sp|Q4W5Z4|DNM3A_CHICK DNA (cytosine-5)-methyltransferase 3A OS=G...    29   9.6  
sp|P0C7U5|C5AR_DANRE C5a anaphylatoxin chemotactic receptor OS=D...    29   9.8  

>sp|Q9UJW3|DNM3L_HUMAN DNA (cytosine-5)-methyltransferase 3-like
           OS=Homo sapiens GN=DNMT3L PE=1 SV=2
          Length = 387

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 294 RNAFLSVAFIYDGFGYQRSCSFC 362
           ++ FL   F+YD  GYQ  CS C
Sbjct: 77  KDKFLDALFLYDDDGYQSYCSIC 99


>sp|Q1LZ53|DNM3A_RAT DNA (cytosine-5)-methyltransferase 3A OS=Rattus
           norvegicus GN=Dnmt3a PE=2 SV=1
          Length = 908

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 294 RNAFLSVAFIYDGFGYQRSCSFC 362
           +N FL  A+ YD  GYQ  C+ C
Sbjct: 514 KNCFLECAYQYDDDGYQSYCTIC 536


>sp|O88508|DNM3A_MOUSE DNA (cytosine-5)-methyltransferase 3A OS=Mus
           musculus GN=Dnmt3a PE=1 SV=2
          Length = 908

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 294 RNAFLSVAFIYDGFGYQRSCSFC 362
           +N FL  A+ YD  GYQ  C+ C
Sbjct: 514 KNCFLECAYQYDDDGYQSYCTIC 536


>sp|Q9Y6K1|DNM3A_HUMAN DNA (cytosine-5)-methyltransferase 3A OS=Homo
           sapiens GN=DNMT3A PE=1 SV=4
          Length = 912

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 294 RNAFLSVAFIYDGFGYQRSCSFC 362
           +N FL  A+ YD  GYQ  C+ C
Sbjct: 518 KNCFLECAYQYDDDGYQSYCTIC 540


>sp|Q4W5Z4|DNM3A_CHICK DNA (cytosine-5)-methyltransferase 3A
           OS=Gallus gallus GN=DNMT3A PE=2 SV=1
          Length = 877

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 294 RNAFLSVAFIYDGFGYQRSCSFC 362
           +N FL  A+ YD  GYQ  C+ C
Sbjct: 483 KNCFLECAYQYDDDGYQSYCTIC 505


>sp|P0C7U5|C5AR_DANRE C5a anaphylatoxin chemotactic receptor
           OS=Danio rerio GN=c5ar1 PE=3 SV=1
          Length = 346

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 19/66 (28%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
 Frame = +1

Query: 253 PLYGLDMLIGLIDREMHSCQLPLFMMVLVTSVLAHSVACIMPL--ICL----NETKVTSI 414
           PL+ +D+LI + D+     ++ L +  ++T  LA+  +C+ PL  +CL     E  ++S+
Sbjct: 253 PLHIVDLLILVSDQPSERFEVNLNLAHVLTLCLAYINSCLNPLLYVCLGRGFKENLISSL 312

Query: 415 LSLCYF 432
            S+ +F
Sbjct: 313 RSVLHF 318
tr_hit_id A7SL60
Definition tr|A7SL60|A7SL60_NEMVE Predicted protein (Fragment) OS=Nematostella vectensis
Align length 61
Score (bit) 32.7
E-value 9.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952062|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0013_B08, 5'
         (480 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7SL60|A7SL60_NEMVE Predicted protein (Fragment) OS=Nematoste...    33   9.2  

>tr|A7SL60|A7SL60_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g122333 PE=3 SV=1
          Length = 300

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 21/61 (34%), Positives = 35/61 (57%)
 Frame = +1

Query: 208 FVVC*QHLGTTVHI*PLYGLDMLIGLIDREMHSCQLPLFMMVLVTSVLAHSVACIMPLIC 387
           F VC      TVH+      + ++ ++DR+M  CQ+PL++++ +  V AHS A I P + 
Sbjct: 227 FAVC----WVTVHV------NHVMVVVDRQMFDCQVPLWVIMFMYMV-AHSNAAINPCLY 275

Query: 388 L 390
           L
Sbjct: 276 L 276