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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK952130
Clone id TST38A01NGRL0013_E07
Library
Length 583
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0013_E07. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GTCAGGGGAGAGCTTTGAGTCGACTAATACTGGGAACGCCGACTCAATAAAACTGAGATA
GAATGTAGTACTACAGCTTCGTTGTCGAAAGAGAGAACCTAAACGTCTGCTCAAAAAGAT
TGAAACAACGAGGAAACTTCCGAATCTGATTCAACAGTGAATAGTGAGATCTGGTAGTTG
GGATGGCGAGGGAAGCTGACAGTTTTTTCTTTGGATCTAACAAGAAAAAAAAAAGTAAAG
CTCACTCTCGCCCGTAAATTTAGTGCTAAATTGTAATAAAATTGCTTCTCATAAACAGAA
GTGTATGAATGAAAAACTGACGAAGCTCCGCGGGAACTACCAGTATATCGATTTACAATA
AGTAAGAAGTGATGTTGCAGTTACGAGGAGCCGGTCGGAAGGAGACTTCCACATCCGGTT
CTGTAGCAAAGATGAAAAAAAAAAAAAAAAATTTGTCAGCATCGATTGCAACCCCAGACG
AACTAAATACCGTAAGCAACATAGGGGAAGATTGAGGGGAATATCCAGTCGCGGCAACGT
AGTTTCATTTGGAAAATATGCTCTTCAAGCCCTTGAACCTGCT
■■Homology search results ■■ -
sp_hit_id Q85FI5
Definition sp|Q85FI5|RK16_ADICA 50S ribosomal protein L16, chloroplastic OS=Adiantum capillus-veneris
Align length 38
Score (bit) 80.1
E-value 7.0e-15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952130|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0013_E07, 5'
         (583 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q85FI5|RK16_ADICA 50S ribosomal protein L16, chloroplastic OS...    80   7e-15
sp|Q2VEE3|RK16_SOLTU 50S ribosomal protein L16, chloroplastic OS...    69   1e-11
sp|Q2MIF0|RK16_SOLBU 50S ribosomal protein L16, chloroplastic OS...    69   1e-11
sp|A6MMP5|RK16_DIOEL 50S ribosomal protein L16, chloroplastic OS...    69   1e-11
sp|Q1KXS1|RK16_HELAN 50S ribosomal protein L16, chloroplastic OS...    68   3e-11
sp|B2LMN1|RK16_GUIAB 50S ribosomal protein L16, chloroplastic OS...    68   3e-11
sp|P06384|RK16_TOBAC 50S ribosomal protein L16, chloroplastic OS...    67   5e-11
sp|Q33BZ5|RK16_NICTO 50S ribosomal protein L16, chloroplastic OS...    67   5e-11
sp|Q3C1L8|RK16_NICSY 50S ribosomal protein L16, chloroplastic OS...    67   5e-11
sp|A2T371|RK16_ANGEV 50S ribosomal protein L16, chloroplastic OS...    67   5e-11
sp|P42353|RK16_VIGUN 50S ribosomal protein L16, chloroplastic (F...    67   6e-11
sp|Q2MI63|RK16_SOLLC 50S ribosomal protein L16, chloroplastic OS...    67   6e-11
sp|Q68RW9|RK16_PANGI 50S ribosomal protein L16, chloroplastic OS...    67   6e-11
sp|Q0G9S4|RK16_DAUCA 50S ribosomal protein L16, chloroplastic OS...    67   6e-11
sp|Q8S8V6|RK16_ATRBE 50S ribosomal protein L16, chloroplastic OS...    67   6e-11
sp|A4GYU8|RK16_POPTR 50S ribosomal protein L16, chloroplastic OS...    66   1e-10
sp|Q14FC0|RK16_POPAL 50S ribosomal protein L16, chloroplastic OS...    66   1e-10
sp|B0Z5G5|RK16_OENPA 50S ribosomal protein L16, chloroplastic OS...    66   1e-10
sp|B0Z581|RK16_OENGL 50S ribosomal protein L16, chloroplastic OS...    66   1e-10
sp|Q9MTI8|RK16_OENEH 50S ribosomal protein L16, chloroplastic OS...    66   1e-10
sp|B0Z4Z7|RK16_OENBI 50S ribosomal protein L16, chloroplastic OS...    66   1e-10
sp|B0Z4R3|RK16_OENAR 50S ribosomal protein L16, chloroplastic OS...    66   1e-10
sp|Q332T9|RK16_LACSA 50S ribosomal protein L16, chloroplastic OS...    66   1e-10
sp|A8SEE1|RK16_CERDE 50S ribosomal protein L16, chloroplastic OS...    66   1e-10
sp|A4GG85|RK16_PHAVU 50S ribosomal protein L16, chloroplastic OS...    66   1e-10
sp|Q06R94|RK16_JASNU 50S ribosomal protein L16, chloroplastic OS...    66   1e-10
sp|Q09ME0|RK16_CITSI 50S ribosomal protein L16, chloroplastic OS...    66   1e-10
sp|A6MMG0|RK16_CHLSC 50S ribosomal protein L16, chloroplastic OS...    66   1e-10
sp|Q70XX3|RK16_AMBTC 50S ribosomal protein L16, chloroplastic OS...    66   1e-10
sp|Q8MCA4|RK16_PHAAN 50S ribosomal protein L16, chloroplastic OS...    65   2e-10

>sp|Q85FI5|RK16_ADICA 50S ribosomal protein L16, chloroplastic
           OS=Adiantum capillus-veneris GN=rpl16 PE=2 SV=1
          Length = 137

 Score = 80.1 bits (196), Expect = 7e-15
 Identities = 38/38 (100%), Positives = 38/38 (100%)
 Frame = +2

Query: 470 NPRRTKYRKQHRGRLRGISSRGNVVSFGKYALQALEPA 583
           NPRRTKYRKQHRGRLRGISSRGNVVSFGKYALQALEPA
Sbjct: 3   NPRRTKYRKQHRGRLRGISSRGNVVSFGKYALQALEPA 40


>sp|Q2VEE3|RK16_SOLTU 50S ribosomal protein L16, chloroplastic
           OS=Solanum tuberosum GN=rpl16 PE=3 SV=1
          Length = 134

 Score = 69.3 bits (168), Expect = 1e-11
 Identities = 30/38 (78%), Positives = 37/38 (97%)
 Frame = +2

Query: 470 NPRRTKYRKQHRGRLRGISSRGNVVSFGKYALQALEPA 583
           +P+RT++RKQHRGR++GISSRGN +SFGKYALQALEPA
Sbjct: 3   SPKRTRFRKQHRGRMKGISSRGNHISFGKYALQALEPA 40


>sp|Q2MIF0|RK16_SOLBU 50S ribosomal protein L16, chloroplastic
           OS=Solanum bulbocastanum GN=rpl16 PE=3 SV=1
          Length = 134

 Score = 69.3 bits (168), Expect = 1e-11
 Identities = 30/38 (78%), Positives = 37/38 (97%)
 Frame = +2

Query: 470 NPRRTKYRKQHRGRLRGISSRGNVVSFGKYALQALEPA 583
           +P+RT++RKQHRGR++GISSRGN +SFGKYALQALEPA
Sbjct: 3   SPKRTRFRKQHRGRMKGISSRGNRISFGKYALQALEPA 40


>sp|A6MMP5|RK16_DIOEL 50S ribosomal protein L16, chloroplastic
           OS=Dioscorea elephantipes GN=rpl16 PE=3 SV=1
          Length = 136

 Score = 69.3 bits (168), Expect = 1e-11
 Identities = 30/38 (78%), Positives = 36/38 (94%)
 Frame = +2

Query: 470 NPRRTKYRKQHRGRLRGISSRGNVVSFGKYALQALEPA 583
           NP+RT++RKQHRGR+RGIS RGN +SFG+YALQALEPA
Sbjct: 4   NPKRTRFRKQHRGRMRGISCRGNHISFGRYALQALEPA 41


>sp|Q1KXS1|RK16_HELAN 50S ribosomal protein L16, chloroplastic
           OS=Helianthus annuus GN=rpl16 PE=3 SV=1
          Length = 136

 Score = 68.2 bits (165), Expect = 3e-11
 Identities = 29/38 (76%), Positives = 35/38 (92%)
 Frame = +2

Query: 470 NPRRTKYRKQHRGRLRGISSRGNVVSFGKYALQALEPA 583
           NP+RT++RKQHRGR++GIS RGN + FGKYALQALEPA
Sbjct: 4   NPKRTRFRKQHRGRMKGISYRGNTICFGKYALQALEPA 41


>sp|B2LMN1|RK16_GUIAB 50S ribosomal protein L16, chloroplastic
           OS=Guizotia abyssinica GN=rpl16 PE=3 SV=1
          Length = 136

 Score = 68.2 bits (165), Expect = 3e-11
 Identities = 29/38 (76%), Positives = 35/38 (92%)
 Frame = +2

Query: 470 NPRRTKYRKQHRGRLRGISSRGNVVSFGKYALQALEPA 583
           NP+RT++RKQHRGR++GIS RGN + FGKYALQALEPA
Sbjct: 4   NPKRTRFRKQHRGRMKGISYRGNTICFGKYALQALEPA 41


>sp|P06384|RK16_TOBAC 50S ribosomal protein L16, chloroplastic
           OS=Nicotiana tabacum GN=rpl16 PE=3 SV=1
          Length = 134

 Score = 67.4 bits (163), Expect = 5e-11
 Identities = 29/38 (76%), Positives = 36/38 (94%)
 Frame = +2

Query: 470 NPRRTKYRKQHRGRLRGISSRGNVVSFGKYALQALEPA 583
           +P+RT++RKQHRGR++GIS RGN +SFGKYALQALEPA
Sbjct: 3   SPKRTRFRKQHRGRMKGISHRGNHISFGKYALQALEPA 40


>sp|Q33BZ5|RK16_NICTO 50S ribosomal protein L16, chloroplastic
           OS=Nicotiana tomentosiformis GN=rpl16 PE=3 SV=1
          Length = 134

 Score = 67.4 bits (163), Expect = 5e-11
 Identities = 29/38 (76%), Positives = 36/38 (94%)
 Frame = +2

Query: 470 NPRRTKYRKQHRGRLRGISSRGNVVSFGKYALQALEPA 583
           +P+RT++RKQHRGR++GIS RGN +SFGKYALQALEPA
Sbjct: 3   SPKRTRFRKQHRGRMKGISHRGNHISFGKYALQALEPA 40


>sp|Q3C1L8|RK16_NICSY 50S ribosomal protein L16, chloroplastic
           OS=Nicotiana sylvestris GN=rpl16 PE=3 SV=1
          Length = 134

 Score = 67.4 bits (163), Expect = 5e-11
 Identities = 29/38 (76%), Positives = 36/38 (94%)
 Frame = +2

Query: 470 NPRRTKYRKQHRGRLRGISSRGNVVSFGKYALQALEPA 583
           +P+RT++RKQHRGR++GIS RGN +SFGKYALQALEPA
Sbjct: 3   SPKRTRFRKQHRGRMKGISHRGNHISFGKYALQALEPA 40


>sp|A2T371|RK16_ANGEV 50S ribosomal protein L16, chloroplastic
           OS=Angiopteris evecta GN=rpl16 PE=3 SV=1
          Length = 146

 Score = 67.4 bits (163), Expect = 5e-11
 Identities = 29/37 (78%), Positives = 35/37 (94%)
 Frame = +2

Query: 470 NPRRTKYRKQHRGRLRGISSRGNVVSFGKYALQALEP 580
           NPRRT++RKQHRGR+RGIS+RGN + FGK+ALQALEP
Sbjct: 3   NPRRTRFRKQHRGRMRGISTRGNRICFGKFALQALEP 39
tr_hit_id A7QC71
Definition tr|A7QC71|A7QC71_VITVI Chromosome chr10 scaffold_76, whole genome shotgun sequence OS=Vitis vinifera
Align length 58
Score (bit) 70.5
E-value 7.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952130|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0013_E07, 5'
         (583 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7QC71|A7QC71_VITVI Chromosome chr10 scaffold_76, whole genom...    70   7e-11
tr|Q4FGB2|Q4FGB2_TYPLA Chloroplast 50S ribosomal protein L16 (Fr...    70   9e-11
tr|A9QAT1|A9QAT1_9APIA Chloroplast 50S ribosomal protein L16 (Fr...    69   2e-10
tr|Q4FGB1|Q4FGB1_9ASPA Chloroplast 50S ribosomal protein L16 (Fr...    69   3e-10
tr|Q8LV24|Q8LV24_PHAVU Ribosomal protein 16 (Fragment) OS=Phaseo...    68   4e-10
tr|Q5GIC9|Q5GIC9_9ROSI Chloroplast 50S ribosomal protein L16 (Fr...    67   6e-10
tr|A7KVR5|A7KVR5_OLEEU Chloroplast 50S ribosomal protein L16 (Fr...    67   7e-10
tr|A0EJ34|A0EJ34_9CARY Ribosomal protein L16 (Fragment) OS=Harri...    67   7e-10
tr|Q8HU73|Q8HU73_9BRYO Chloroplast 50S ribosomal protein L16 (Fr...    67   1e-09
tr|B6RD83|B6RD83_9CARY Ribosomal protein L16 (Fragment) OS=Charp...    67   1e-09
tr|B6RD82|B6RD82_9CARY Ribosomal protein L16 (Fragment) OS=Charp...    67   1e-09
tr|A9QBH7|A9QBH7_MUSAC Chloroplast 50S ribosomal protein L16 (Fr...    66   1e-09
tr|Q8HUC1|Q8HUC1_9BRYO Chloroplast 50S ribosomal protein L16 (Fr...    66   2e-09
tr|Q8HUB8|Q8HUB8_9BRYO Chloroplast 50S ribosomal protein L16 (Fr...    66   2e-09
tr|Q8HUB7|Q8HUB7_9BRYO Chloroplast 50S ribosomal protein L16 (Fr...    66   2e-09
tr|Q8HUB6|Q8HUB6_9BRYO Chloroplast 50S ribosomal protein L16 (Fr...    66   2e-09
tr|Q8HUB5|Q8HUB5_9BRYO Chloroplast 50S ribosomal protein L16 (Fr...    66   2e-09
tr|Q8HUB3|Q8HUB3_9BRYO Chloroplast 50S ribosomal protein L16 (Fr...    66   2e-09
tr|Q8HUB2|Q8HUB2_9BRYO Chloroplast 50S ribosomal protein L16 (Fr...    66   2e-09
tr|Q8HUB1|Q8HUB1_9BRYO Ribosomal protein L16 (Fragment) OS=Brach...    66   2e-09
tr|Q8HUA9|Q8HUA9_9BRYO Chloroplast 50S ribosomal protein L16 (Fr...    66   2e-09
tr|Q8HUA8|Q8HUA8_9BRYO Chloroplast 50S ribosomal protein L16 (Fr...    66   2e-09
tr|Q8HUA7|Q8HUA7_9BRYO Chloroplast 50S ribosomal protein L16 (Fr...    66   2e-09
tr|Q8HUA6|Q8HUA6_9BRYO Chloroplast 50S ribosomal protein L16 (Fr...    66   2e-09
tr|Q8HUA5|Q8HUA5_9BRYO Chloroplast 50S ribosomal protein L16 (Fr...    66   2e-09
tr|Q8HUA4|Q8HUA4_9BRYO Chloroplast 50S ribosomal protein L16 (Fr...    66   2e-09
tr|Q8HUA3|Q8HUA3_9BRYO Chloroplast 50S ribosomal protein L16 (Fr...    66   2e-09
tr|Q8HUA2|Q8HUA2_9BRYO Chloroplast 50S ribosomal protein L16 (Fr...    66   2e-09
tr|Q8HUA1|Q8HUA1_9BRYO Chloroplast 50S ribosomal protein L16 (Fr...    66   2e-09
tr|Q8HUA0|Q8HUA0_9BRYO Ribosomal protein L16 (Fragment) OS=Bryum...    66   2e-09

>tr|A7QC71|A7QC71_VITVI Chromosome chr10 scaffold_76, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00035271001
           PE=3 SV=1
          Length = 140

 Score = 70.5 bits (171), Expect = 7e-11
 Identities = 34/58 (58%), Positives = 43/58 (74%)
 Frame = +2

Query: 410 HIRFCSKDEXXXXXFVSIDCNPRRTKYRKQHRGRLRGISSRGNVVSFGKYALQALEPA 583
           H+RF S+D         I  NP+RT++RKQHRGR++GIS RGN + FG+YALQALEPA
Sbjct: 6   HVRFWSRDGILKRP---IHYNPKRTRFRKQHRGRMKGISYRGNRICFGRYALQALEPA 60


>tr|Q4FGB2|Q4FGB2_TYPLA Chloroplast 50S ribosomal protein L16
           (Fragment) OS=Typha latifolia GN=rpl16 PE=3 SV=1
          Length = 136

 Score = 70.1 bits (170), Expect = 9e-11
 Identities = 30/41 (73%), Positives = 38/41 (92%)
 Frame = +2

Query: 461 IDCNPRRTKYRKQHRGRLRGISSRGNVVSFGKYALQALEPA 583
           +D NP+RT++RKQHRGR++GIS RGN +SFG+YALQALEPA
Sbjct: 1   MDYNPKRTRFRKQHRGRMKGISCRGNHISFGRYALQALEPA 41


>tr|A9QAT1|A9QAT1_9APIA Chloroplast 50S ribosomal protein L16
           (Fragment) OS=Anethum graveolens GN=rpl16 PE=3 SV=1
          Length = 136

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 30/38 (78%), Positives = 36/38 (94%)
 Frame = +2

Query: 470 NPRRTKYRKQHRGRLRGISSRGNVVSFGKYALQALEPA 583
           NP+RT++RKQHRGR++GIS RGN +SFGKYALQALEPA
Sbjct: 4   NPKRTRFRKQHRGRMKGISYRGNHISFGKYALQALEPA 41


>tr|Q4FGB1|Q4FGB1_9ASPA Chloroplast 50S ribosomal protein L16
           (Fragment) OS=Yucca schidigera GN=rpl16 PE=3 SV=1
          Length = 130

 Score = 68.6 bits (166), Expect = 3e-10
 Identities = 29/38 (76%), Positives = 36/38 (94%)
 Frame = +2

Query: 470 NPRRTKYRKQHRGRLRGISSRGNVVSFGKYALQALEPA 583
           NP+RT++RKQHRGR++GIS RGN +SFG+YALQALEPA
Sbjct: 1   NPKRTRFRKQHRGRMKGISCRGNQISFGRYALQALEPA 38


>tr|Q8LV24|Q8LV24_PHAVU Ribosomal protein 16 (Fragment) OS=Phaseolus
           vulgaris GN=rpl16 PE=4 SV=1
          Length = 41

 Score = 67.8 bits (164), Expect = 4e-10
 Identities = 29/41 (70%), Positives = 38/41 (92%)
 Frame = +2

Query: 458 SIDCNPRRTKYRKQHRGRLRGISSRGNVVSFGKYALQALEP 580
           +I+ NP+RT++RKQHRGR++GISSRGN + FG+YALQALEP
Sbjct: 1   TINYNPQRTRFRKQHRGRMKGISSRGNHICFGRYALQALEP 41


>tr|Q5GIC9|Q5GIC9_9ROSI Chloroplast 50S ribosomal protein L16
           (Fragment) OS=Fagus grandifolia GN=rpl16 PE=3 SV=1
          Length = 55

 Score = 67.4 bits (163), Expect = 6e-10
 Identities = 29/42 (69%), Positives = 38/42 (90%)
 Frame = +2

Query: 458 SIDCNPRRTKYRKQHRGRLRGISSRGNVVSFGKYALQALEPA 583
           +I+ NP+RT++RKQHRGR++GIS RGN + FG+YALQALEPA
Sbjct: 1   TINYNPKRTRFRKQHRGRMKGISYRGNRICFGRYALQALEPA 42


>tr|A7KVR5|A7KVR5_OLEEU Chloroplast 50S ribosomal protein L16
           (Fragment) OS=Olea europaea GN=rpl16 PE=3 SV=1
          Length = 59

 Score = 67.0 bits (162), Expect = 7e-10
 Identities = 29/38 (76%), Positives = 35/38 (92%)
 Frame = +2

Query: 470 NPRRTKYRKQHRGRLRGISSRGNVVSFGKYALQALEPA 583
           NP+RT++RKQHRGR++GIS RGN + FGKYALQALEPA
Sbjct: 4   NPKRTRFRKQHRGRMKGISYRGNHICFGKYALQALEPA 41


>tr|A0EJ34|A0EJ34_9CARY Ribosomal protein L16 (Fragment) OS=Harrisia
           earlei GN=rpl16 PE=3 SV=1
          Length = 54

 Score = 67.0 bits (162), Expect = 7e-10
 Identities = 28/38 (73%), Positives = 36/38 (94%)
 Frame = +2

Query: 470 NPRRTKYRKQHRGRLRGISSRGNVVSFGKYALQALEPA 583
           NP+RT++RKQHRGR++G+S RGN +SFG+YALQALEPA
Sbjct: 4   NPKRTRFRKQHRGRMKGLSYRGNRISFGRYALQALEPA 41


>tr|Q8HU73|Q8HU73_9BRYO Chloroplast 50S ribosomal protein L16
           (Fragment) OS=Pohlia cruda GN=rpl16 PE=3 SV=1
          Length = 49

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 28/37 (75%), Positives = 35/37 (94%)
 Frame = +2

Query: 473 PRRTKYRKQHRGRLRGISSRGNVVSFGKYALQALEPA 583
           P+RTK+RKQHRGR++GIS+RGN + FGK+ALQALEPA
Sbjct: 1   PKRTKFRKQHRGRMKGISTRGNAICFGKFALQALEPA 37


>tr|B6RD83|B6RD83_9CARY Ribosomal protein L16 (Fragment)
           OS=Charpentiera tomentosa GN=rpl16 PE=4 SV=1
          Length = 52

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 28/38 (73%), Positives = 35/38 (92%)
 Frame = +2

Query: 470 NPRRTKYRKQHRGRLRGISSRGNVVSFGKYALQALEPA 583
           NP+RT++RKQHRGR++GIS RGN + FG+YALQALEPA
Sbjct: 4   NPKRTRFRKQHRGRMKGISYRGNCICFGRYALQALEPA 41