DK952132 |
Clone id |
TST38A01NGRL0013_E09 |
Library |
TST38 |
Length |
586 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0013_E09. 5' end sequence. |
Accession |
DK952132 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL1325Contig1 |
Sequence |
TAAAGTTACAAGCTCCTTTTGGTTCAGCTGAATCCATGCGGCACCTTGCAACCCTGGTCC TTTTGCAGCAGGGAGAAAGGCAGGCAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAA CATTTCCTTCATGAAGCGTCAAGTTTTGCATAGTGTTTACGTTTTGATTGGAGATGTGGA CTCTGGTCTTTTGCCATGACATTTACTTTTTGAAAAACAGCGCCTCTTTTGAGGCAAGGA CTGAAGCATGGTGATGGCCACGTGCAGTTCTTCCTACACTGCCAGTGTGGGCATGTTGGC TTCAAAAATATCTGGATCCTCAGGGATGGCTTATTGCTCTCTATCAAAGTTACCAACATA TGCAAGTTCACATCCAAGGTCATCAACCGGGATTAGAGAAGTCTTATCCCCTTCTTCTCG CTGGTTTTCGACTGGTTTTCTTCGTCTCAAAATGCTCTCCTTGGAACTTGTGCCTCGAAA AGGACAATGGACTTCTATAAGGTCTATGGCACAGGAGGTTGCAACACAGGCCAAGGTAAC AACAAAATGTTTTTTCGACATTGAAATCGGAGGGAGTCCTGCTGGA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P34791 |
Definition |
sp|P34791|CP20C_ARATH Peptidyl-prolyl cis-trans isomerase CYP20-3, chloroplastic OS=Arabidopsis thaliana |
Align length |
52 |
Score (bit) |
36.6 |
E-value |
0.095 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK952132|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0013_E09, 5' (586 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P34791|CP20C_ARATH Peptidyl-prolyl cis-trans isomerase CYP20-... 37 0.095 sp|Q41651|CYPB_VICFA Peptidyl-prolyl cis-trans isomerase, chloro... 35 0.21 sp|Q8D2F5|TILS_WIGBR tRNA(Ile)-lysidine synthase OS=Wigglesworth... 34 0.61 sp|P38419|LOXC1_ORYSJ Lipoxygenase 7, chloroplastic OS=Oryza sat... 32 1.8 sp|Q8R151|ZNFX1_MOUSE NFX1-type zinc finger-containing protein 1... 31 3.9 sp|Q9P2E3|ZNFX1_HUMAN NFX1-type zinc finger-containing protein 1... 31 3.9 sp|P14088|PPIA_ECHGR Peptidyl-prolyl cis-trans isomerase OS=Echi... 31 4.0 sp|Q8VC74|COX18_MOUSE Mitochondrial inner membrane protein COX18... 31 5.2 sp|P07570|VPRT_MPMV Protease OS=Mason-Pfizer monkey virus GN=pro... 30 6.8 sp|P52013|CYP5_CAEEL Peptidyl-prolyl cis-trans isomerase 5 OS=Ca... 30 6.8 sp|P52014|CYP6_CAEEL Peptidyl-prolyl cis-trans isomerase 6 OS=Ca... 30 8.9
>sp|P34791|CP20C_ARATH Peptidyl-prolyl cis-trans isomerase CYP20-3, chloroplastic OS=Arabidopsis thaliana GN=CYP20-3 PE=1 SV=1 Length = 260
Score = 36.6 bits (83), Expect = 0.095 Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 5/52 (9%) Frame = +2
Query: 446 LKMLSLELVPRKGQWTS-IRSMAQE----VATQAKVTTKCFFDIEIGGSPAG 586 +K S K Q T+ ++SMA E + QAKVT K +FD+EIGG AG Sbjct: 58 IKQFSGVYATTKHQRTACVKSMAAEEEEVIEPQAKVTNKVYFDVEIGGEVAG 109
>sp|Q41651|CYPB_VICFA Peptidyl-prolyl cis-trans isomerase, chloroplastic OS=Vicia faba PE=1 SV=1 Length = 248
Score = 35.4 bits (80), Expect = 0.21 Identities = 16/20 (80%), Positives = 17/20 (85%) Frame = +2
Query: 527 QAKVTTKCFFDIEIGGSPAG 586 QAKVT+K FFDIEIGG AG Sbjct: 77 QAKVTSKIFFDIEIGGESAG 96
>sp|Q8D2F5|TILS_WIGBR tRNA(Ile)-lysidine synthase OS=Wigglesworthia glossinidia brevipalpis GN=tilS PE=3 SV=1 Length = 400
Score = 33.9 bits (76), Expect = 0.61 Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 6/100 (6%) Frame = -3
Query: 422 SEKKGIRLL*SRLMTLDVNLHMLVTLIESNKPS----LRIQIFLKPTCPHWQCRKNCTWP 255 S KK L S + V LHM+ I+ K + +I F H C+++ W Sbjct: 10 SYKKSYVLAFSGGLDSTVLLHMISLYIKKIKNNNNFFKKIFKFRAVYINHNICKESKYWS 69
Query: 254 SPCFSPCLKRGAVFQKVNVMAKDQSPHLQS--KRKHYAKL 141 + C CLK F+ +N+ D S ++S +R+ Y L Sbjct: 70 NHCHDQCLKYKVFFKSINIFISDFSEGIESSARRERYKAL 109
>sp|P38419|LOXC1_ORYSJ Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2 Length = 924
Score = 32.3 bits (72), Expect = 1.8 Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 4/122 (3%) Frame = +2
Query: 233 GKD*SMVMATC-SSSYTASVGMLASKISGSSGMAYCSLSKLPTYASSHPRSSTGIREVLS 409 G+ S V+ C SSS TAS G +S ++ ++ + +++ + S IR+++ Sbjct: 52 GQGSSRVVVVCASSSATASRGDSSSDMAAAAAVRVKAVATIKVTVGELINRSIDIRDLIG 111
Query: 410 PSSRWFSTGFLRLKMLSLELVPRKG-QWTSIRSMAQEV--ATQAKVTTKCFFDIEIGGSP 580 S L L+++S EL + G + ++RS A V + VT + FD+ G P Sbjct: 112 RS--------LSLELVSSELDAKTGKEKATVRSYAHNVDDDDHSVVTYEADFDVPSGFGP 163
Query: 581 AG 586 G Sbjct: 164 IG 165
>sp|Q8R151|ZNFX1_MOUSE NFX1-type zinc finger-containing protein 1 OS=Mus musculus GN=Znfx1 PE=2 SV=2 Length = 1909
Score = 31.2 bits (69), Expect = 3.9 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 3/25 (12%) Frame = -3
Query: 293 CPHWQCRKNCTWP---SPCFSPCLK 228 C H+QC K C+ P PC+ PC K Sbjct: 1510 CQHYQCTKLCSEPCNRPPCYVPCTK 1534
>sp|Q9P2E3|ZNFX1_HUMAN NFX1-type zinc finger-containing protein 1 OS=Homo sapiens GN=ZNFX1 PE=1 SV=2 Length = 1918
Score = 31.2 bits (69), Expect = 3.9 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 3/25 (12%) Frame = -3
Query: 293 CPHWQCRKNCTWP---SPCFSPCLK 228 C H+QC K C+ P PC+ PC K Sbjct: 1518 CQHYQCTKLCSEPCNRPPCYVPCTK 1542
>sp|P14088|PPIA_ECHGR Peptidyl-prolyl cis-trans isomerase OS=Echinococcus granulosus GN=CYP-1 PE=2 SV=2 Length = 162
Score = 31.2 bits (69), Expect = 4.0 Identities = 12/14 (85%), Positives = 12/14 (85%) Frame = +2
Query: 545 KCFFDIEIGGSPAG 586 KCFFDI IGG PAG Sbjct: 4 KCFFDISIGGKPAG 17
>sp|Q8VC74|COX18_MOUSE Mitochondrial inner membrane protein COX18 OS=Mus musculus GN=Cox18 PE=2 SV=4 Length = 331
Score = 30.8 bits (68), Expect = 5.2 Identities = 15/32 (46%), Positives = 15/32 (46%) Frame = +3
Query: 255 WPRAVLPTLPVWACWLQKYLDPQGWLIALYQS 350 W A LP LPVWA P GW AL S Sbjct: 27 WSSARLPALPVWAAASVSAASPGGWYEALAAS 58
>sp|P07570|VPRT_MPMV Protease OS=Mason-Pfizer monkey virus GN=pro PE=1 SV=1 Length = 314
Score = 30.4 bits (67), Expect = 6.8 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 1/72 (1%) Frame = +2
Query: 263 CSSSYTASVGMLASKISGSSGMAYCSLSKLPTYASSHPRS-STGIREVLSPSSRWFSTGF 439 CSS + L GS+G+ CS S P++ STGI L P++ G Sbjct: 30 CSSQQKQPISKLTRATPGSAGLDLCSTSHTVLTPEMGPQALSTGIYGPLPPNTFGLILGR 89
Query: 440 LRLKMLSLELVP 475 + M L++ P Sbjct: 90 SSITMKGLQVYP 101
>sp|P52013|CYP5_CAEEL Peptidyl-prolyl cis-trans isomerase 5 OS=Caenorhabditis elegans GN=cyn-5 PE=1 SV=2 Length = 204
Score = 30.4 bits (67), Expect = 6.8 Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 1/32 (3%) Frame = +2
Query: 494 SIRSMAQ-EVATQAKVTTKCFFDIEIGGSPAG 586 ++ ++AQ + A KVT K +FD+EIGG P G Sbjct: 12 AVGALAQGDDAKGPKVTDKVYFDMEIGGKPIG 43
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TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NLD0 |
Definition |
tr|A9NLD0|A9NLD0_PICSI Peptidyl-prolyl cis-trans isomerase OS=Picea sitchensis |
Align length |
103 |
Score (bit) |
62.8 |
E-value |
1.0e-08 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK952132|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0013_E09, 5' (586 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9NLD0|A9NLD0_PICSI Peptidyl-prolyl cis-trans isomerase OS=Pi... 63 1e-08 tr|A7Q0X2|A7Q0X2_VITVI Peptidyl-prolyl cis-trans isomerase OS=Vi... 50 1e-04 tr|A5B9P8|A5B9P8_VITVI Peptidyl-prolyl cis-trans isomerase OS=Vi... 50 1e-04 tr|B8ACM2|B8ACM2_ORYSI Putative uncharacterized protein OS=Oryza... 46 0.001 tr|B6TQ97|B6TQ97_MAIZE Peptidyl-prolyl cis-trans isomerase OS=Ze... 44 0.009 tr|B4FRI7|B4FRI7_MAIZE Putative uncharacterized protein OS=Zea m... 44 0.009 tr|Q9AQU0|Q9AQU0_ORYSJ Peptidyl-prolyl cis-trans isomerase OS=Or... 40 0.074 tr|Q0JNJ3|Q0JNJ3_ORYSJ Peptidyl-prolyl cis-trans isomerase OS=Or... 40 0.074 tr|A2ZRX7|A2ZRX7_ORYSJ Peptidyl-prolyl cis-trans isomerase OS=Or... 40 0.074 tr|A9SXM6|A9SXM6_PHYPA Peptidyl-prolyl cis-trans isomerase OS=Ph... 39 0.17 tr|A8XK42|A8XK42_CAEBR CBR-HYL-2 protein OS=Caenorhabditis brigg... 39 0.28 tr|B6VB54|B6VB54_IPOBA Peptidylprolyl isomerase OS=Ipomoea batat... 39 0.28 tr|A9TAX1|A9TAX1_PHYPA Peptidyl-prolyl cis-trans isomerase (Frag... 38 0.48 tr|A9SIJ8|A9SIJ8_PHYPA Peptidyl-prolyl cis-trans isomerase OS=Ph... 38 0.48 tr|Q5Z9I0|Q5Z9I0_ORYSJ Peptidyl-prolyl cis-trans isomerase OS=Or... 36 1.8 tr|A2YGV1|A2YGV1_ORYSI Peptidyl-prolyl cis-trans isomerase OS=Or... 36 1.8 tr|A8XWF8|A8XWF8_CAEBR Peptidyl-prolyl cis-trans isomerase OS=Ca... 35 3.1 tr|Q324E8|Q324E8_SHIBS Putative IS1 encoded protein OS=Shigella ... 34 7.0 tr|A8J282|A8J282_CHLRE Peptidyl-prolyl cis-trans isomerase OS=Ch... 34 7.0 tr|B2ZF19|B2ZF19_BOMMO Abdominal A OS=Bombyx mori GN=abd-A PE=2 ... 33 9.1
>tr|A9NLD0|A9NLD0_PICSI Peptidyl-prolyl cis-trans isomerase OS=Picea sitchensis PE=2 SV=1 Length = 261
Score = 62.8 bits (151), Expect = 1e-08 Identities = 39/103 (37%), Positives = 56/103 (54%), Gaps = 3/103 (2%) Frame = +2
Query: 287 VGMLASKISGSSGMAYCSLS---KLPTYASSHPRSSTGIREVLSPSSRWFSTGFLRLKML 457 +G A + G ++ C S K P + RSS ++ S+ F +GF K + Sbjct: 17 LGKTALHVLGPQVVSQCRQSVMFKCPPHTLKTMRSSQNLQ------SKNFYSGFTPFKSV 70
Query: 458 SLELVPRKGQWTSIRSMAQEVATQAKVTTKCFFDIEIGGSPAG 586 + R Q S R+M+Q+ A Q+KVT+KCFFDIEIGG+PAG Sbjct: 71 FISTSKRSWQTGSARAMSQDAAFQSKVTSKCFFDIEIGGAPAG 113
>tr|A7Q0X2|A7Q0X2_VITVI Peptidyl-prolyl cis-trans isomerase OS=Vitis vinifera GN=GSVIVT00028214001 PE=3 SV=1 Length = 157
Score = 49.7 bits (117), Expect = 1e-04 Identities = 21/30 (70%), Positives = 24/30 (80%) Frame = +2
Query: 497 IRSMAQEVATQAKVTTKCFFDIEIGGSPAG 586 + SMA EV QAKVTTKCFFD++IGG P G Sbjct: 73 VNSMANEVELQAKVTTKCFFDVDIGGEPVG 102
>tr|A5B9P8|A5B9P8_VITVI Peptidyl-prolyl cis-trans isomerase OS=Vitis vinifera GN=VITISV_015631 PE=3 SV=1 Length = 253
Score = 49.7 bits (117), Expect = 1e-04 Identities = 21/30 (70%), Positives = 24/30 (80%) Frame = +2
Query: 497 IRSMAQEVATQAKVTTKCFFDIEIGGSPAG 586 + SMA EV QAKVTTKCFFD++IGG P G Sbjct: 73 VNSMANEVELQAKVTTKCFFDVDIGGEPVG 102
>tr|B8ACM2|B8ACM2_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_01440 PE=4 SV=1 Length = 238
Score = 46.2 bits (108), Expect = 0.001 Identities = 36/89 (40%), Positives = 44/89 (49%), Gaps = 3/89 (3%) Frame = +2
Query: 329 AYCSLSKLPTYASSHPRSSTGIREVLSPSSRWFSTGF-LRLKMLSLELVPRKGQWTSIRS 505 A CS S L H S G +PS G LRL++ S G +R+ Sbjct: 6 AVCSPSALAP--PRHRLLSLGCARTAAPSG-----GLPLRLRLRSSPAPRGHGADLVVRA 58
Query: 506 MAQE--VATQAKVTTKCFFDIEIGGSPAG 586 A E V QAKVT+KCFFD+E+GG PAG Sbjct: 59 AAAEGAVELQAKVTSKCFFDVEVGGEPAG 87
>tr|B6TQ97|B6TQ97_MAIZE Peptidyl-prolyl cis-trans isomerase OS=Zea mays PE=2 SV=1 Length = 242
Score = 43.5 bits (101), Expect = 0.009 Identities = 20/32 (62%), Positives = 25/32 (78%), Gaps = 2/32 (6%) Frame = +2
Query: 497 IRSMAQE--VATQAKVTTKCFFDIEIGGSPAG 586 +R+ A E V QAKVT+KCFFD+E+GG PAG Sbjct: 60 VRATAAEGAVELQAKVTSKCFFDVEVGGEPAG 91
>tr|B4FRI7|B4FRI7_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 213
Score = 43.5 bits (101), Expect = 0.009 Identities = 20/32 (62%), Positives = 25/32 (78%), Gaps = 2/32 (6%) Frame = +2
Query: 497 IRSMAQE--VATQAKVTTKCFFDIEIGGSPAG 586 +R+ A E V QAKVT+KCFFD+E+GG PAG Sbjct: 31 VRATAAEGAVELQAKVTSKCFFDVEVGGEPAG 62
>tr|Q9AQU0|Q9AQU0_ORYSJ Peptidyl-prolyl cis-trans isomerase OS=Oryza sativa subsp. japonica GN=P0498A12.16 PE=3 SV=1 Length = 231
Score = 40.4 bits (93), Expect = 0.074 Identities = 16/23 (69%), Positives = 19/23 (82%) Frame = +2
Query: 518 VATQAKVTTKCFFDIEIGGSPAG 586 V QAKV +KCFFD+E+GG PAG Sbjct: 58 VELQAKVNSKCFFDVEVGGEPAG 80
>tr|Q0JNJ3|Q0JNJ3_ORYSJ Peptidyl-prolyl cis-trans isomerase OS=Oryza sativa subsp. japonica GN=Os01g0284700 PE=3 SV=1 Length = 242
Score = 40.4 bits (93), Expect = 0.074 Identities = 16/23 (69%), Positives = 19/23 (82%) Frame = +2
Query: 518 VATQAKVTTKCFFDIEIGGSPAG 586 V QAKV +KCFFD+E+GG PAG Sbjct: 59 VELQAKVNSKCFFDVEVGGEPAG 81
>tr|A2ZRX7|A2ZRX7_ORYSJ Peptidyl-prolyl cis-trans isomerase OS=Oryza sativa subsp. japonica GN=OsJ_001299 PE=3 SV=1 Length = 145
Score = 40.4 bits (93), Expect = 0.074 Identities = 16/23 (69%), Positives = 19/23 (82%) Frame = +2
Query: 518 VATQAKVTTKCFFDIEIGGSPAG 586 V QAKV +KCFFD+E+GG PAG Sbjct: 4 VELQAKVNSKCFFDVEVGGEPAG 26
>tr|A9SXM6|A9SXM6_PHYPA Peptidyl-prolyl cis-trans isomerase OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_107144 PE=3 SV=1 Length = 249
Score = 39.3 bits (90), Expect = 0.17 Identities = 29/75 (38%), Positives = 37/75 (49%) Frame = +2
Query: 362 ASSHPRSSTGIREVLSPSSRWFSTGFLRLKMLSLELVPRKGQWTSIRSMAQEVATQAKVT 541 AS P S + R+ L SS F G +L+ S P Q + R+M +VT Sbjct: 23 ASLSPVSESVQRQALGFSSILFGAGSQQLRSAS---EPTNFQRATTRAM--------QVT 71
Query: 542 TKCFFDIEIGGSPAG 586 TKC+FDI IG PAG Sbjct: 72 TKCYFDITIGNKPAG 86
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