DK952143 |
Clone id |
TST38A01NGRL0013_E20 |
Library |
TST38 |
Length |
555 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0013_E20. 5' end sequence. |
Accession |
DK952143 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL275Contig1 |
Sequence |
TGCTGAAGCTCGCGTTCGTCCAACCATGGCCGGCTCCGAAGGCTACGATGCGCGCGCTTA TGACGCCAAAATGGAACAAGTTCTCACAGGTGAGGGTGACGAGATAAGCTCTACTTGGAA CGAGGTTTGTGAGACCTTTGATGAGATGGGTCTCCACGAGAACCTTTTGAGAGGCATTTA TGCATATGGTTTTGAAAAACCTTCTGCGATTCAGCAAAGGGGAATTGTCCCCTTCGCTAA GGGTTTAGATGTTATTCAGCAGGCACAATCTGGCACTGGCAAGACTGCCACCTTTTGCTC TGGAATACTTCAGCAGCTAGATTATAACCTGTTTGATTGCCAGGCACTTGTCTTGGCACC TACCCGAGAATTGGCTCAGCAGATAGAGAAGGTGATGCGTGCGCTTGGTGATTATTTGCA AGTGAAGGTACATGCTTGTGTTGGTGGTACAAGTGTAAGAGAAGATATTCGAATTCTTCA GAGTGGAGTCCATGTTGTGGTTGGCACTCCTGGTCGAGTTTATGATATGTTACGTCGTGG TTCAATGCGACCAGA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q40471 |
Definition |
sp|Q40471|IF4A9_TOBAC Eukaryotic initiation factor 4A-9 OS=Nicotiana tabacum |
Align length |
172 |
Score (bit) |
276.0 |
E-value |
6.0e-74 |
Report |
 |
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TZ99 |
Definition |
tr|A9TZ99|A9TZ99_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
175 |
Score (bit) |
301.0 |
E-value |
2.0e-80 |
Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK952143|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0013_E20, 5' (542 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9TZ99|A9TZ99_PHYPA Predicted protein OS=Physcomitrella paten... 301 2e-80 tr|A9U6C4|A9U6C4_PHYPA Predicted protein (Fragment) OS=Physcomit... 298 2e-79 tr|A9SGN5|A9SGN5_PHYPA Predicted protein OS=Physcomitrella paten... 298 2e-79 tr|A9SY53|A9SY53_PHYPA Predicted protein OS=Physcomitrella paten... 296 5e-79 tr|A9RVE1|A9RVE1_PHYPA Predicted protein OS=Physcomitrella paten... 291 2e-77 tr|B8LRR8|B8LRR8_PICSI Putative uncharacterized protein OS=Picea... 291 2e-77 tr|A9PA53|A9PA53_POPTR Putative uncharacterized protein OS=Popul... 276 4e-73 tr|Q4U474|Q4U474_PENAM Eukaryotic initiation factor 4A OS=Pennis... 275 1e-72 tr|O24449|O24449_MAIZE Translational initiation factor eIF-4A OS... 275 1e-72 tr|A9PD17|A9PD17_POPTR Putative uncharacterized protein OS=Popul... 274 2e-72 tr|A7P4J8|A7P4J8_VITVI Chromosome chr4 scaffold_6, whole genome ... 273 4e-72 tr|A9P851|A9P851_POPTR Putative uncharacterized protein OS=Popul... 273 6e-72 tr|A7PE49|A7PE49_VITVI Chromosome chr11 scaffold_13, whole genom... 273 6e-72 tr|A7P6N2|A7P6N2_VITVI Chromosome chr9 scaffold_7, whole genome ... 273 6e-72 tr|A5BI23|A5BI23_VITVI Putative uncharacterized protein OS=Vitis... 273 6e-72 tr|O24558|O24558_MAIZE Translation initiation factor OS=Zea mays... 272 7e-72 tr|A9PA36|A9PA36_POPTR Putative uncharacterized protein OS=Popul... 272 7e-72 tr|Q6T8C6|Q6T8C6_HELAN Initiation factor eIF4A-15 OS=Helianthus ... 272 9e-72 tr|A5BNE8|A5BNE8_VITVI Putative uncharacterized protein OS=Vitis... 272 9e-72 tr|Q8H1A4|Q8H1A4_PEA DEAD box RNA helicase OS=Pisum sativum PE=2... 271 1e-71 tr|B7EMF9|B7EMF9_ORYSJ cDNA clone:J033048E24, full insert sequen... 271 2e-71 tr|A3A343|A3A343_ORYSJ Putative uncharacterized protein OS=Oryza... 271 2e-71 tr|A2X0V4|A2X0V4_ORYSI Putative uncharacterized protein OS=Oryza... 271 2e-71 tr|Q8H1A5|Q8H1A5_PEA DEAD box RNA helicase OS=Pisum sativum PE=2... 270 3e-71 tr|B7EPR0|B7EPR0_ORYSJ cDNA clone:001-114-H08, full insert seque... 270 3e-71 tr|B1P765|B1P765_LOLTE Eukaryotic initiation factor 4A (Fragment... 270 3e-71 tr|A2YGP5|A2YGP5_ORYSI Putative uncharacterized protein OS=Oryza... 270 3e-71 tr|B4FBK3|B4FBK3_MAIZE Eukaryotic initiation factor 4A OS=Zea ma... 270 5e-71 tr|Q2V3W0|Q2V3W0_ARATH Uncharacterized protein At3g13920.2 OS=Ar... 269 8e-71 tr|A2Q689|A2Q689_MEDTR Helicase, C-terminal OS=Medicago truncatu... 268 1e-70
>tr|A9TZ99|A9TZ99_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_226898 PE=3 SV=1 Length = 413
Score = 301 bits (770), Expect = 2e-80 Identities = 154/175 (88%), Positives = 160/175 (91%), Gaps = 4/175 (2%) Frame = +2
Query: 26 MAGS--EG--YDARAYDAKMEQVLTGEGDEISSTWNEVCETFDEMGLHENLLRGIYAYGF 193 MAGS EG +DAR YDAKME +L+GEGD+ STW EV ETFD MGLHENLLRGIYAYGF Sbjct: 1 MAGSAPEGSQFDARQYDAKMENILSGEGDDFISTWEEVHETFDVMGLHENLLRGIYAYGF 60
Query: 194 EKPSAIQQRGIVPFAKGLDVIQQAQSGTGKTATFCSGILQQLDYNLFDCQALVLAPTREL 373 EKPSAIQQRGIVPF KGLDVIQQAQSGTGKTATFCSGILQQLDY L +CQALVLAPTREL Sbjct: 61 EKPSAIQQRGIVPFTKGLDVIQQAQSGTGKTATFCSGILQQLDYQLLECQALVLAPTREL 120
Query: 374 AQQIEKVMRALGDYLQVKVHACVGGTSVREDIRILQSGVHVVVGTPGRVYDMLRR 538 AQQIEKVMRALGDYLQVKVHACVGGTSVRED RILQ+GVHVVVGTPGRVYDMLRR Sbjct: 121 AQQIEKVMRALGDYLQVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVYDMLRR 175
>tr|A9U6C4|A9U6C4_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_228441 PE=4 SV=1 Length = 203
Score = 298 bits (762), Expect = 2e-79 Identities = 153/175 (87%), Positives = 159/175 (90%), Gaps = 4/175 (2%) Frame = +2
Query: 26 MAGS--EG--YDARAYDAKMEQVLTGEGDEISSTWNEVCETFDEMGLHENLLRGIYAYGF 193 MAGS EG +DAR YDAKME +L GEG++ STW EV ETFD MGLHENLLRGIYAYGF Sbjct: 1 MAGSAPEGSQFDARQYDAKMETILGGEGEDFISTWEEVHETFDVMGLHENLLRGIYAYGF 60
Query: 194 EKPSAIQQRGIVPFAKGLDVIQQAQSGTGKTATFCSGILQQLDYNLFDCQALVLAPTREL 373 EKPSAIQQRGIVPF KGLDVIQQAQSGTGKTATFCSGILQQLDY L +CQALVLAPTREL Sbjct: 61 EKPSAIQQRGIVPFTKGLDVIQQAQSGTGKTATFCSGILQQLDYQLLECQALVLAPTREL 120
Query: 374 AQQIEKVMRALGDYLQVKVHACVGGTSVREDIRILQSGVHVVVGTPGRVYDMLRR 538 AQQIEKVMRALGDYLQVKVHACVGGTSVRED RILQ+GVHVVVGTPGRVYDMLRR Sbjct: 121 AQQIEKVMRALGDYLQVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVYDMLRR 175
>tr|A9SGN5|A9SGN5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_233331 PE=3 SV=1 Length = 413
Score = 298 bits (762), Expect = 2e-79 Identities = 153/175 (87%), Positives = 159/175 (90%), Gaps = 4/175 (2%) Frame = +2
Query: 26 MAGS--EG--YDARAYDAKMEQVLTGEGDEISSTWNEVCETFDEMGLHENLLRGIYAYGF 193 MAGS EG +DAR YDAKME +L GEG++ STW EV ETFD MGLHENLLRGIYAYGF Sbjct: 1 MAGSAPEGSQFDARQYDAKMETILGGEGEDFISTWEEVHETFDVMGLHENLLRGIYAYGF 60
Query: 194 EKPSAIQQRGIVPFAKGLDVIQQAQSGTGKTATFCSGILQQLDYNLFDCQALVLAPTREL 373 EKPSAIQQRGIVPF KGLDVIQQAQSGTGKTATFCSGILQQLDY L +CQALVLAPTREL Sbjct: 61 EKPSAIQQRGIVPFTKGLDVIQQAQSGTGKTATFCSGILQQLDYQLLECQALVLAPTREL 120
Query: 374 AQQIEKVMRALGDYLQVKVHACVGGTSVREDIRILQSGVHVVVGTPGRVYDMLRR 538 AQQIEKVMRALGDYLQVKVHACVGGTSVRED RILQ+GVHVVVGTPGRVYDMLRR Sbjct: 121 AQQIEKVMRALGDYLQVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVYDMLRR 175
>tr|A9SY53|A9SY53_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_107162 PE=3 SV=1 Length = 413
Score = 296 bits (758), Expect = 5e-79 Identities = 153/175 (87%), Positives = 158/175 (90%), Gaps = 4/175 (2%) Frame = +2
Query: 26 MAGS--EG--YDARAYDAKMEQVLTGEGDEISSTWNEVCETFDEMGLHENLLRGIYAYGF 193 MAGS EG +DAR YDAKME VL GEG++ STW EV ETFD M LHENLLRGIYAYGF Sbjct: 1 MAGSAPEGSQFDARQYDAKMETVLAGEGEDFISTWEEVHETFDVMDLHENLLRGIYAYGF 60
Query: 194 EKPSAIQQRGIVPFAKGLDVIQQAQSGTGKTATFCSGILQQLDYNLFDCQALVLAPTREL 373 EKPSAIQQRGIVPF KGLDVIQQAQSGTGKTATFCSGILQQLDY L +CQALVLAPTREL Sbjct: 61 EKPSAIQQRGIVPFTKGLDVIQQAQSGTGKTATFCSGILQQLDYQLLECQALVLAPTREL 120
Query: 374 AQQIEKVMRALGDYLQVKVHACVGGTSVREDIRILQSGVHVVVGTPGRVYDMLRR 538 AQQIEKVMRALGDYLQVKVHACVGGTSVRED RILQ+GVHVVVGTPGRVYDMLRR Sbjct: 121 AQQIEKVMRALGDYLQVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVYDMLRR 175
>tr|A9RVE1|A9RVE1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_119989 PE=3 SV=1 Length = 414
Score = 291 bits (745), Expect = 2e-77 Identities = 151/176 (85%), Positives = 159/176 (90%), Gaps = 5/176 (2%) Frame = +2
Query: 26 MAGS--EG--YDARAYDAKMEQVLTGEGDEISSTWNEVCETFDEMGLHENLLRGIYAYG- 190 MAGS EG +DAR YDAKME +L+ EG++ STW EV +TFD MGLHENLLRGIYAYG Sbjct: 1 MAGSAPEGSQFDARQYDAKMENILSAEGEDFISTWEEVHDTFDVMGLHENLLRGIYAYGS 60
Query: 191 FEKPSAIQQRGIVPFAKGLDVIQQAQSGTGKTATFCSGILQQLDYNLFDCQALVLAPTRE 370 FEKPSAIQQRGIVPF KGLDVIQQAQSGTGKTATFCSGILQQLDY L +CQALVLAPTRE Sbjct: 61 FEKPSAIQQRGIVPFTKGLDVIQQAQSGTGKTATFCSGILQQLDYQLLECQALVLAPTRE 120
Query: 371 LAQQIEKVMRALGDYLQVKVHACVGGTSVREDIRILQSGVHVVVGTPGRVYDMLRR 538 LAQQIEKVMRALGDYLQVKVHACVGGTSVRED RILQ+GVHVVVGTPGRVYDMLRR Sbjct: 121 LAQQIEKVMRALGDYLQVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVYDMLRR 176
>tr|B8LRR8|B8LRR8_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 413
Score = 291 bits (744), Expect = 2e-77 Identities = 143/165 (86%), Positives = 156/165 (94%) Frame = +2
Query: 44 YDARAYDAKMEQVLTGEGDEISSTWNEVCETFDEMGLHENLLRGIYAYGFEKPSAIQQRG 223 +DAR YDAKM+++L+ EGDE+ ++++EV E+FDEMGLHENLLRGIYAYGFEKPSAIQQRG Sbjct: 11 FDARQYDAKMKEILSTEGDELFASYDEVHESFDEMGLHENLLRGIYAYGFEKPSAIQQRG 70
Query: 224 IVPFAKGLDVIQQAQSGTGKTATFCSGILQQLDYNLFDCQALVLAPTRELAQQIEKVMRA 403 IVPF KGLDVIQQAQSGTGKTATFCSGILQQLDY L DCQALVLAPTRELAQQIEKVMRA Sbjct: 71 IVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLLDCQALVLAPTRELAQQIEKVMRA 130
Query: 404 LGDYLQVKVHACVGGTSVREDIRILQSGVHVVVGTPGRVYDMLRR 538 LGDYLQVKVHACVGGTSVR+D RIL SGVHVVVGTPGRV+DMLRR Sbjct: 131 LGDYLQVKVHACVGGTSVRDDQRILMSGVHVVVGTPGRVFDMLRR 175
>tr|A9PA53|A9PA53_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 413
Score = 276 bits (707), Expect = 4e-73 Identities = 138/165 (83%), Positives = 146/165 (88%) Frame = +2
Query: 44 YDARAYDAKMEQVLTGEGDEISSTWNEVCETFDEMGLHENLLRGIYAYGFEKPSAIQQRG 223 YDA+ YDAKM +L +G + + + EV ETFD MGL ENLLRGIYAYGFEKPSAIQQRG Sbjct: 11 YDAKQYDAKMNDLLANDGQDFFTMYEEVFETFDSMGLQENLLRGIYAYGFEKPSAIQQRG 70
Query: 224 IVPFAKGLDVIQQAQSGTGKTATFCSGILQQLDYNLFDCQALVLAPTRELAQQIEKVMRA 403 IVPF KGLDVIQQAQSGTGKTATFCSGILQQLDY L CQALVLAPTRELAQQIEKVMRA Sbjct: 71 IVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRA 130
Query: 404 LGDYLQVKVHACVGGTSVREDIRILQSGVHVVVGTPGRVYDMLRR 538 LGDYL VKVHACVGGTSVRED RILQ+GVHVVVGTPGRV+DMLRR Sbjct: 131 LGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR 175
>tr|Q4U474|Q4U474_PENAM Eukaryotic initiation factor 4A OS=Pennisetum americanum GN=eIF4A PE=2 SV=1 Length = 414
Score = 275 bits (702), Expect = 1e-72 Identities = 138/166 (83%), Positives = 153/166 (92%), Gaps = 1/166 (0%) Frame = +2
Query: 44 YDARAYDAKMEQVL-TGEGDEISSTWNEVCETFDEMGLHENLLRGIYAYGFEKPSAIQQR 220 +DA+ YD+KM+++L TGE +E ++++EV E+FD+MGL ENLLRGIYAYGFEKPSAIQQR Sbjct: 11 FDAKHYDSKMQELLSTGETEEFFTSYDEVFESFDDMGLQENLLRGIYAYGFEKPSAIQQR 70
Query: 221 GIVPFAKGLDVIQQAQSGTGKTATFCSGILQQLDYNLFDCQALVLAPTRELAQQIEKVMR 400 GIVPF KGLDVIQQAQSGTGKTATFCSGILQQLDY L +CQALVLAPTRELAQQIEKVMR Sbjct: 71 GIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMR 130
Query: 401 ALGDYLQVKVHACVGGTSVREDIRILQSGVHVVVGTPGRVYDMLRR 538 ALGDYL VKVHACVGGTSVRED RIL SGVHVVVGTPGRV+DMLRR Sbjct: 131 ALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRVFDMLRR 176
>tr|O24449|O24449_MAIZE Translational initiation factor eIF-4A OS=Zea mays GN=tif-4A3 PE=2 SV=1 Length = 414
Score = 275 bits (702), Expect = 1e-72 Identities = 138/166 (83%), Positives = 153/166 (92%), Gaps = 1/166 (0%) Frame = +2
Query: 44 YDARAYDAKMEQVL-TGEGDEISSTWNEVCETFDEMGLHENLLRGIYAYGFEKPSAIQQR 220 +DA+ YD+KM+++L TGE +E ++++EV E+FD+MGL ENLLRGIYAYGFEKPSAIQQR Sbjct: 11 FDAKHYDSKMQELLSTGETEEFFTSYDEVFESFDDMGLQENLLRGIYAYGFEKPSAIQQR 70
Query: 221 GIVPFAKGLDVIQQAQSGTGKTATFCSGILQQLDYNLFDCQALVLAPTRELAQQIEKVMR 400 GIVPF KGLDVIQQAQSGTGKTATFCSGILQQLDY L +CQALVLAPTRELAQQIEKVMR Sbjct: 71 GIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMR 130
Query: 401 ALGDYLQVKVHACVGGTSVREDIRILQSGVHVVVGTPGRVYDMLRR 538 ALGDYL VKVHACVGGTSVRED RIL SGVHVVVGTPGRV+DMLRR Sbjct: 131 ALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRVFDMLRR 176
>tr|A9PD17|A9PD17_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 413
Score = 274 bits (700), Expect = 2e-72 Identities = 135/165 (81%), Positives = 148/165 (89%) Frame = +2
Query: 44 YDARAYDAKMEQVLTGEGDEISSTWNEVCETFDEMGLHENLLRGIYAYGFEKPSAIQQRG 223 +D++ YDAKM +L +G + ++++EV +TFD MGL ENLLRGIYAYGFEKPSAIQQRG Sbjct: 11 FDSKQYDAKMNDLLANDGQDFFTSYDEVYDTFDSMGLQENLLRGIYAYGFEKPSAIQQRG 70
Query: 224 IVPFAKGLDVIQQAQSGTGKTATFCSGILQQLDYNLFDCQALVLAPTRELAQQIEKVMRA 403 IVPF KGLDVIQQAQSGTGKTATFCSGILQQLDY L CQALVLAPTRELAQQIEKVMRA Sbjct: 71 IVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRA 130
Query: 404 LGDYLQVKVHACVGGTSVREDIRILQSGVHVVVGTPGRVYDMLRR 538 LGDYL VKVHACVGGTSVRED RILQ+GVHVVVGTPGRV+DMLRR Sbjct: 131 LGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR 175
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