DK952155 |
Clone id |
TST38A01NGRL0013_F10 |
Library |
TST38 |
Length |
639 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0013_F10. 5' end sequence. |
Accession |
DK952155 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL94Contig1 |
Sequence |
GAGGATTCCACATCCCACTATCCCGCTTCGTCTTCCTCCTTTCTCGCTCTCTGAGCTTTT CGGCTATGGCGTCTTGTAGCTTCAGTCACTGCTCTATTTCTACCCTTGAAAATCAGCGTG TGCTTGCAAAGACCCCCTCTTCATCCGTATCTGCTGCTCCCACTTCGACTCGTGGATTAA GTTCTTCTGCCTCTTTCGCGCAGCTAAGCTTTCAGGAAGGAGTCTGCCTTCGAGGTGTTG CTTCTCGCAGAAGTGTGCACCTTCTTGTTCGTGCTGCTCGTGAGAAGTTTGAGCGCAATA AGCCGCATGTGAACATTGGCACTATTGGCCATGTCGACCACGGGAAAACGACTCTCACTG CTGCCCTCACAATGGCTGCAGCGTCTGAGCTAGGGAGTGCTCCTAAAAGATATGATCAGA TTGATGCTGCCCCAGAGGAAAGAGCAAGAGGTATTACCATCAACACCGCAGTGGTCGAAT ATGAGTCTCCCAACAGACACTATGCACACGTGGACTGCCCTGGACATGCTGACTATGTGA AGAACATGATAACTGGTGCAGCGCANATGGATGGTGCCATCCTTGTCGTCTCTGGAGCAA ATGGTGCCATGCCTCAGACGAAAGAACACATTCTTTTGG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P68158 |
Definition |
sp|P68158|EFTU_TOBAC Elongation factor Tu, chloroplastic OS=Nicotiana tabacum |
Align length |
133 |
Score (bit) |
199.0 |
E-value |
1.0e-50 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK952155|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0013_F10, 5' (639 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P68158|EFTU_TOBAC Elongation factor Tu, chloroplastic OS=Nico... 199 1e-50 sp|Q43364|EFTUB_NICSY Elongation factor TuB, chloroplastic OS=Ni... 199 1e-50 sp|Q40450|EFTUA_NICSY Elongation factor TuA, chloroplastic OS=Ni... 199 1e-50 sp|P46280|EFTU2_SOYBN Elongation factor Tu, chloroplastic OS=Gly... 199 1e-50 sp|Q43467|EFTU1_SOYBN Elongation factor Tu, chloroplastic OS=Gly... 197 5e-50 sp|P17745|EFTU_ARATH Elongation factor Tu, chloroplastic OS=Arab... 195 2e-49 sp|O24310|EFTU_PEA Elongation factor Tu, chloroplastic OS=Pisum ... 193 6e-49 sp|A2CI56|EFTU_CHLAT Elongation factor Tu, chloroplastic OS=Chlo... 191 3e-48 sp|Q1KVS9|EFTU_SCEOB Elongation factor Tu, chloroplastic OS=Scen... 189 1e-47 sp|Q0P3M7|EFTU_OSTTA Elongation factor Tu, chloroplastic OS=Ostr... 188 2e-47 sp|Q9MUP0|EFTU_MESVI Elongation factor Tu, chloroplastic OS=Meso... 188 2e-47 sp|Q1LI13|EFTU_RALME Elongation factor Tu OS=Ralstonia metallidu... 187 5e-47 sp|Q46WC7|EFTU_RALEJ Elongation factor Tu OS=Ralstonia eutropha ... 187 5e-47 sp|Q0K5Z9|EFTU_RALEH Elongation factor Tu OS=Ralstonia eutropha ... 187 5e-47 sp|P42481|EFTU_THICU Elongation factor Tu OS=Thiobacillus cuprin... 186 9e-47 sp|Q8XGZ0|EFTU_RALSO Elongation factor Tu OS=Ralstonia solanacea... 186 1e-46 sp|Q47JA5|EFTU_DECAR Elongation factor Tu OS=Dechloromonas aroma... 184 3e-46 sp|A4JAM5|EFTU_BURVG Elongation factor Tu OS=Burkholderia vietna... 184 3e-46 sp|Q2SU25|EFTU_BURTA Elongation factor Tu OS=Burkholderia thaila... 184 3e-46 sp|Q63PZ6|EFTU_BURPS Elongation factor Tu OS=Burkholderia pseudo... 184 3e-46 sp|A3NEI1|EFTU_BURP6 Elongation factor Tu OS=Burkholderia pseudo... 184 3e-46 sp|Q3JMP6|EFTU_BURP1 Elongation factor Tu OS=Burkholderia pseudo... 184 3e-46 sp|A3P0B5|EFTU_BURP0 Elongation factor Tu OS=Burkholderia pseudo... 184 3e-46 sp|A1V8A5|EFTU_BURMS Elongation factor Tu OS=Burkholderia mallei... 184 3e-46 sp|Q62GK3|EFTU_BURMA Elongation factor Tu OS=Burkholderia mallei... 184 3e-46 sp|A2S7F9|EFTU_BURM9 Elongation factor Tu OS=Burkholderia mallei... 184 3e-46 sp|A3MRT8|EFTU_BURM7 Elongation factor Tu OS=Burkholderia mallei... 184 3e-46 sp|Q06J54|EFTU_BIGNA Elongation factor Tu, chloroplastic OS=Bige... 184 3e-46 sp|Q3SLQ1|EFTU_THIDA Elongation factor Tu OS=Thiobacillus denitr... 184 3e-46 sp|Q20EU5|EFTU_OLTVI Elongation factor Tu, chloroplastic OS=Oltm... 184 3e-46
>sp|P68158|EFTU_TOBAC Elongation factor Tu, chloroplastic OS=Nicotiana tabacum GN=TUFA PE=3 SV=1 Length = 478
Score = 199 bits (506), Expect = 1e-50 Identities = 100/133 (75%), Positives = 105/133 (78%) Frame = +3
Query: 240 ASRRSVHLLVRAAREKFERNKPHVNIGTIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQ 419 A+ R VRAAR KFER KPHVNIGTIGHVDHGK S SAPK+YD+ Sbjct: 59 ATHRHRRFTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASMGNSAPKKYDE 118
Query: 420 IDAAPEERARGITINTAVVEYESPNRHYAHVDCPGHADYVKNMITGAAXMDGAILVVSGA 599 IDAAPEERARGITINTA VEYE+ NRHYAHVDCPGHADYVKNMITGAA MDGAILV SGA Sbjct: 119 IDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSGA 178
Query: 600 NGAMPQTKEHILL 638 +G MPQTKEHILL Sbjct: 179 DGPMPQTKEHILL 191
>sp|Q43364|EFTUB_NICSY Elongation factor TuB, chloroplastic OS=Nicotiana sylvestris GN=TUFB PE=2 SV=1 Length = 485
Score = 199 bits (506), Expect = 1e-50 Identities = 99/124 (79%), Positives = 103/124 (83%) Frame = +3
Query: 267 VRAAREKFERNKPHVNIGTIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQIDAAPEERA 446 VRAAR KFER KPHVNIGTIGHVDHGK S SAPK+YD+IDAAPEERA Sbjct: 75 VRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASMGNSAPKKYDEIDAAPEERA 134
Query: 447 RGITINTAVVEYESPNRHYAHVDCPGHADYVKNMITGAAXMDGAILVVSGANGAMPQTKE 626 RGITINTA VEYE+ NRHYAHVDCPGHADYVKNMITGAA MDGAILVVSGA+G MPQTKE Sbjct: 135 RGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKE 194
Query: 627 HILL 638 HILL Sbjct: 195 HILL 198
>sp|Q40450|EFTUA_NICSY Elongation factor TuA, chloroplastic OS=Nicotiana sylvestris GN=TUFA PE=2 SV=2 Length = 478
Score = 199 bits (506), Expect = 1e-50 Identities = 100/133 (75%), Positives = 105/133 (78%) Frame = +3
Query: 240 ASRRSVHLLVRAAREKFERNKPHVNIGTIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQ 419 A+ R VRAAR KFER KPHVNIGTIGHVDHGK S SAPK+YD+ Sbjct: 59 ATHRHRRFTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASMGNSAPKKYDE 118
Query: 420 IDAAPEERARGITINTAVVEYESPNRHYAHVDCPGHADYVKNMITGAAXMDGAILVVSGA 599 IDAAPEERARGITINTA VEYE+ NRHYAHVDCPGHADYVKNMITGAA MDGAILV SGA Sbjct: 119 IDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSGA 178
Query: 600 NGAMPQTKEHILL 638 +G MPQTKEHILL Sbjct: 179 DGPMPQTKEHILL 191
>sp|P46280|EFTU2_SOYBN Elongation factor Tu, chloroplastic OS=Glycine max GN=TUFB1 PE=3 SV=1 Length = 479
Score = 199 bits (505), Expect = 1e-50 Identities = 99/124 (79%), Positives = 103/124 (83%) Frame = +3
Query: 267 VRAAREKFERNKPHVNIGTIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQIDAAPEERA 446 VRAAR KFER KPHVNIGTIGHVDHGK S SAPK+YD+IDAAPEERA Sbjct: 69 VRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERA 128
Query: 447 RGITINTAVVEYESPNRHYAHVDCPGHADYVKNMITGAAXMDGAILVVSGANGAMPQTKE 626 RGITINTA VEYE+ NRHYAHVDCPGHADYVKNMITGAA MDGAILVVSGA+G MPQTKE Sbjct: 129 RGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKE 188
Query: 627 HILL 638 HILL Sbjct: 189 HILL 192
>sp|Q43467|EFTU1_SOYBN Elongation factor Tu, chloroplastic OS=Glycine max GN=TUFA PE=3 SV=1 Length = 479
Score = 197 bits (500), Expect = 5e-50 Identities = 97/124 (78%), Positives = 103/124 (83%) Frame = +3
Query: 267 VRAAREKFERNKPHVNIGTIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQIDAAPEERA 446 VRAAR KFER KPHVNIGTIGHVDHGK + SAPK+YD+IDAAPEERA Sbjct: 69 VRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALAALGNSAPKKYDEIDAAPEERA 128
Query: 447 RGITINTAVVEYESPNRHYAHVDCPGHADYVKNMITGAAXMDGAILVVSGANGAMPQTKE 626 RGITINTA VEYE+ NRHYAHVDCPGHADYVKNMITGAA MDGAILVVSGA+G MPQTKE Sbjct: 129 RGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKE 188
Query: 627 HILL 638 HI+L Sbjct: 189 HIIL 192
>sp|P17745|EFTU_ARATH Elongation factor Tu, chloroplastic OS=Arabidopsis thaliana GN=TUFA PE=1 SV=1 Length = 476
Score = 195 bits (495), Expect = 2e-49 Identities = 100/133 (75%), Positives = 106/133 (79%) Frame = +3
Query: 240 ASRRSVHLLVRAAREKFERNKPHVNIGTIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQ 419 ++RRS VRAAR KFER KPHVNIGTIGHVDHGK S S K+YD+ Sbjct: 59 STRRS--FTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASIGSSVAKKYDE 116
Query: 420 IDAAPEERARGITINTAVVEYESPNRHYAHVDCPGHADYVKNMITGAAXMDGAILVVSGA 599 IDAAPEERARGITINTA VEYE+ NRHYAHVDCPGHADYVKNMITGAA MDGAILVVSGA Sbjct: 117 IDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGA 176
Query: 600 NGAMPQTKEHILL 638 +G MPQTKEHILL Sbjct: 177 DGPMPQTKEHILL 189
>sp|O24310|EFTU_PEA Elongation factor Tu, chloroplastic OS=Pisum sativum GN=tufA PE=2 SV=1 Length = 488
Score = 193 bits (491), Expect = 6e-49 Identities = 96/124 (77%), Positives = 101/124 (81%) Frame = +3
Query: 267 VRAAREKFERNKPHVNIGTIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQIDAAPEERA 446 VRAAR KFER KPH+NIGTIGHVDHGK SAPK+YD+IDAAPEERA Sbjct: 78 VRAARGKFERKKPHLNIGTIGHVDHGKTTLTAALTMALACLGNSAPKKYDEIDAAPEERA 137
Query: 447 RGITINTAVVEYESPNRHYAHVDCPGHADYVKNMITGAAXMDGAILVVSGANGAMPQTKE 626 RGITINTA VEYE+ RHYAHVDCPGHADYVKNMITGAA MDGAILVVSGA+G MPQTKE Sbjct: 138 RGITINTATVEYETETRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKE 197
Query: 627 HILL 638 HILL Sbjct: 198 HILL 201
>sp|A2CI56|EFTU_CHLAT Elongation factor Tu, chloroplastic OS=Chlorokybus atmophyticus GN=tufA PE=3 SV=1 Length = 410
Score = 191 bits (485), Expect = 3e-48 Identities = 94/121 (77%), Positives = 99/121 (81%) Frame = +3
Query: 276 AREKFERNKPHVNIGTIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQIDAAPEERARGI 455 AREKFER KPHVNIGTIGHVDHGK + G+ KRYD+IDAAPEERARGI Sbjct: 2 AREKFERKKPHVNIGTIGHVDHGKTTLTAAITMALAASTGAKGKRYDEIDAAPEERARGI 61
Query: 456 TINTAVVEYESPNRHYAHVDCPGHADYVKNMITGAAXMDGAILVVSGANGAMPQTKEHIL 635 TINTA VEYE+ RHYAHVDCPGHADYVKNMITGAA MDGAILVVSGA+G MPQTKEHIL Sbjct: 62 TINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHIL 121
Query: 636 L 638 L Sbjct: 122 L 122
>sp|Q1KVS9|EFTU_SCEOB Elongation factor Tu, chloroplastic OS=Scenedesmus obliquus GN=tufA PE=3 SV=1 Length = 419
Score = 189 bits (480), Expect = 1e-47 Identities = 92/121 (76%), Positives = 101/121 (83%) Frame = +3
Query: 276 AREKFERNKPHVNIGTIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQIDAAPEERARGI 455 AR KFER+KPHVNIGTIGHVDHGK + G+ K+YD+ID+APEE+ARGI Sbjct: 2 ARAKFERSKPHVNIGTIGHVDHGKTTLTAAITMALAALGGATGKKYDEIDSAPEEKARGI 61
Query: 456 TINTAVVEYESPNRHYAHVDCPGHADYVKNMITGAAXMDGAILVVSGANGAMPQTKEHIL 635 TINTA VEYE+PNRHYAHVDCPGHADYVKNMITGAA MDGAILVVSGA+G MPQTKEHIL Sbjct: 62 TINTAHVEYETPNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHIL 121
Query: 636 L 638 L Sbjct: 122 L 122
>sp|Q0P3M7|EFTU_OSTTA Elongation factor Tu, chloroplastic OS=Ostreococcus tauri GN=tufA PE=3 SV=1 Length = 409
Score = 188 bits (478), Expect = 2e-47 Identities = 92/121 (76%), Positives = 100/121 (82%) Frame = +3
Query: 276 AREKFERNKPHVNIGTIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQIDAAPEERARGI 455 AREKFER KPHVNIGTIGHVDHGK + GSA K+YD+ID++PEE+ARGI Sbjct: 2 AREKFERTKPHVNIGTIGHVDHGKTTLTAAITMAMAARGGSAGKKYDEIDSSPEEKARGI 61
Query: 456 TINTAVVEYESPNRHYAHVDCPGHADYVKNMITGAAXMDGAILVVSGANGAMPQTKEHIL 635 TINTA VEYE+ RHYAHVDCPGHADYVKNMITGAA MDGAILVVSGA+G MPQTKEHIL Sbjct: 62 TINTAHVEYETATRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHIL 121
Query: 636 L 638 L Sbjct: 122 L 122
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B6TFK5 |
Definition |
tr|B6TFK5|B6TFK5_MAIZE Elongation factor Tu OS=Zea mays |
Align length |
133 |
Score (bit) |
204.0 |
E-value |
5.0e-51 |
Report |
|