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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK952178
Clone id TST38A01NGRL0013_G09
Library
Length 582
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0013_G09. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GAAGAAGGGCAGTTTCTTCCTCGTAGCAGAAAGAGCCCATCGTGAACTCTCTCTGCTTTC
AGTAAACACAATTTATGCTTGCCAGTTTTGTCATTGAACTGATGAGATTTAGGCTTTTGG
AGCTTAAGCTTCACGGAAAGGTGGCATTGGCTAGCCTAGCAAGGGCTAGTTGGTGCTAAT
TCAAGTTGTCACGACGGCTTTGTCCTTCAGAGCGAAGCCACATCCTGGGCATAACGAGAC
ATGCAAGAGAAGTCTGTTTAGGTCTCTCTTGAGCTCACCTTCAGTGCACGGTGGTCGTGG
AGCCCTACCATCTGAGGGAGGACATCCTTCTGACCTAACATATTTGGCTGGTGGAGGACA
ATCCCTTGACTTTATTGCCTCTCTCACTCCTGCCTACTTCTCTTTGAAGAGGTGTGAGTG
AGTGAAGGCCCAGCATCATGCGGACAATTCAGCGTGTAGAAACTGTTCTGTCCATTAATC
AGTATGATGCTGAGAATGGGAAGGAGCCTCTTGGTAATTGCTGTGCCCCAGGATCTTCCC
TGCCTTTGTTTAAGTTTCCAAGAAGGCTCCGTTTTCCTCCTG
■■Homology search results ■■ -
sp_hit_id P95778
Definition sp|P95778|RMLA_STRMU Glucose-1-phosphate thymidylyltransferase OS=Streptococcus mutans
Align length 38
Score (bit) 32.0
E-value 2.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952178|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0013_G09, 5'
         (582 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P95778|RMLA_STRMU Glucose-1-phosphate thymidylyltransferase O...    32   2.3  
sp|P08103|HCK_MOUSE Tyrosine-protein kinase HCK OS=Mus musculus ...    31   5.2  
sp|Q8VRZ2|HPPA_OCHA4 Pyrophosphate-energized proton pump OS=Ochr...    30   8.7  
sp|Q8BID8|FXL14_MOUSE F-box/LRR-repeat protein 14 OS=Mus musculu...    30   8.7  
sp|Q8N1E6|FXL14_HUMAN F-box/LRR-repeat protein 14 OS=Homo sapien...    30   8.7  
sp|Q17R01|FXL14_BOVIN F-box/LRR-repeat protein 14 OS=Bos taurus ...    30   8.7  
sp|P39393|YJIV_ECOLI Putative uncharacterized protein yjiV OS=Es...    30   8.8  
sp|Q6PEV3|WIPF2_MOUSE WAS/WASL-interacting protein family member...    30   8.8  
sp|Q8TF74|WIPF2_HUMAN WAS/WASL-interacting protein family member...    30   8.8  

>sp|P95778|RMLA_STRMU Glucose-1-phosphate thymidylyltransferase
           OS=Streptococcus mutans GN=rmlA PE=3 SV=1
          Length = 289

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +1

Query: 463 LFCPLISMMLRMGRSLLVIAVPQDLPCLCLSFQEGSVF 576
           ++ PL ++ML   + +L+I+ PQDLP      Q+GS F
Sbjct: 34  IYYPLSTLMLAGIKDILIISTPQDLPRFKELLQDGSEF 71


>sp|P08103|HCK_MOUSE Tyrosine-protein kinase HCK OS=Mus musculus
           GN=Hck PE=1 SV=4
          Length = 524

 Score = 30.8 bits (68), Expect = 5.2
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 327 GCPPSDGRAPRPPCTEGELKRD 262
           GCP S+GRAPR  C +    RD
Sbjct: 11  GCPRSEGRAPRMGCVKSRFLRD 32


>sp|Q8VRZ2|HPPA_OCHA4 Pyrophosphate-energized proton pump
           OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 /
           NCTC 12168) GN=hppA PE=3 SV=2
          Length = 718

 Score = 30.0 bits (66), Expect = 8.7
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 293 GRGALPSEGGHPSDLTYLAGGGQSLDFIASLTPAYFSL 406
           G GAL     + +DL Y A  GQ+  + A + P  F L
Sbjct: 483 GLGALVLFAAYSNDLAYFAANGQTYPYFADMGPVSFDL 520


>sp|Q8BID8|FXL14_MOUSE F-box/LRR-repeat protein 14 OS=Mus musculus
           GN=Fbxl14 PE=2 SV=1
          Length = 400

 Score = 30.0 bits (66), Expect = 8.7
 Identities = 27/86 (31%), Positives = 33/86 (38%), Gaps = 7/86 (8%)
 Frame = +3

Query: 48  SLCFQ*TQFMLASFVIELMRFRLLELKLHGKVALASLARASWC*FKLS-------RRLCP 206
           SLC Q T   L      L    +LEL     +    L   +W   +L        R L  
Sbjct: 125 SLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSD 184

Query: 207 SERSHILGITRHAREVCLGLS*AHLQ 284
               H+ G+TR A E CLGL    LQ
Sbjct: 185 VGIGHLAGMTRSAAEGCLGLEQLTLQ 210


>sp|Q8N1E6|FXL14_HUMAN F-box/LRR-repeat protein 14 OS=Homo sapiens
           GN=FBXL14 PE=2 SV=1
          Length = 418

 Score = 30.0 bits (66), Expect = 8.7
 Identities = 27/86 (31%), Positives = 33/86 (38%), Gaps = 7/86 (8%)
 Frame = +3

Query: 48  SLCFQ*TQFMLASFVIELMRFRLLELKLHGKVALASLARASWC*FKLS-------RRLCP 206
           SLC Q T   L      L    +LEL     +    L   +W   +L        R L  
Sbjct: 125 SLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSD 184

Query: 207 SERSHILGITRHAREVCLGLS*AHLQ 284
               H+ G+TR A E CLGL    LQ
Sbjct: 185 VGIGHLAGMTRSAAEGCLGLEQLTLQ 210


>sp|Q17R01|FXL14_BOVIN F-box/LRR-repeat protein 14 OS=Bos taurus
           GN=FBXL14 PE=2 SV=1
          Length = 400

 Score = 30.0 bits (66), Expect = 8.7
 Identities = 27/86 (31%), Positives = 33/86 (38%), Gaps = 7/86 (8%)
 Frame = +3

Query: 48  SLCFQ*TQFMLASFVIELMRFRLLELKLHGKVALASLARASWC*FKLS-------RRLCP 206
           SLC Q T   L      L    +LEL     +    L   +W   +L        R L  
Sbjct: 125 SLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSD 184

Query: 207 SERSHILGITRHAREVCLGLS*AHLQ 284
               H+ G+TR A E CLGL    LQ
Sbjct: 185 VGIGHLAGMTRSAAEGCLGLEQLTLQ 210


>sp|P39393|YJIV_ECOLI Putative uncharacterized protein yjiV
           OS=Escherichia coli (strain K12) GN=yjiV PE=5 SV=3
          Length = 906

 Score = 30.0 bits (66), Expect = 8.8
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
 Frame = +1

Query: 109 LGFWSLSFTERWHWLA*QG-----LVGANSSCHDGFVLQSEATSWA 231
           +G+W ++F+ +WH+   +      LV    +C +G V  SE  SWA
Sbjct: 852 MGYWRINFSSQWHYFDFRDDVSFQLVKMAQACKEGNVANSE-ESWA 896


>sp|Q6PEV3|WIPF2_MOUSE WAS/WASL-interacting protein family member 2
           OS=Mus musculus GN=Wipf2 PE=2 SV=1
          Length = 440

 Score = 30.0 bits (66), Expect = 8.8
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -1

Query: 369 SRDCPPPAKYVRSEGC-PPSDGRAPRPP 289
           +RD PPP    R  G  PPS G+ P PP
Sbjct: 336 ARDAPPPPPPYRMHGSEPPSRGKPPPPP 363


>sp|Q8TF74|WIPF2_HUMAN WAS/WASL-interacting protein family member 2
           OS=Homo sapiens GN=WIPF2 PE=1 SV=1
          Length = 440

 Score = 30.0 bits (66), Expect = 8.8
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -1

Query: 369 SRDCPPPAKYVRSEGC-PPSDGRAPRPP 289
           +RD PPP    R  G  PPS G+ P PP
Sbjct: 336 ARDAPPPPPPYRMHGSEPPSRGKPPPPP 363
tr_hit_id B8LLJ1
Definition tr|B8LLJ1|B8LLJ1_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 46
Score (bit) 44.3
E-value 0.005
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952178|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0013_G09, 5'
         (582 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LLJ1|B8LLJ1_PICSI Putative uncharacterized protein OS=Picea...    44   0.005
tr|B8LL93|B8LL93_PICSI Putative uncharacterized protein OS=Picea...    44   0.005
tr|B8LM04|B8LM04_PICSI Putative uncharacterized protein OS=Picea...    43   0.011
tr|A9SSY3|A9SSY3_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.019
tr|A9T7K7|A9T7K7_PHYPA Predicted protein (Fragment) OS=Physcomit...    42   0.032
tr|B6TMF8|B6TMF8_MAIZE VTC2 OS=Zea mays PE=2 SV=1                      40   0.072
tr|A7PRA4|A7PRA4_VITVI Chromosome chr14 scaffold_26, whole genom...    40   0.094
tr|Q2QWM9|Q2QWM9_ORYSJ Os12g0190000 protein OS=Oryza sativa subs...    37   0.80 
tr|A8HUV4|A8HUV4_CHLRE Predicted protein OS=Chlamydomonas reinha...    35   4.0  
tr|Q3K8W1|Q3K8W1_PSEPF Glucose-1-phosphate thymidylyltransferase...    35   4.0  
tr|B8BNI6|B8BNI6_ORYSI Putative uncharacterized protein OS=Oryza...    34   5.2  
tr|B3GK04|B3GK04_TOBAC VTC2-like protein OS=Nicotiana tabacum PE...    34   6.8  
tr|A7RAA1|A7RAA1_PSEFL Glucose-1-phosphate thymidylyltransferase...    34   6.9  

>tr|B8LLJ1|B8LLJ1_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 431

 Score = 44.3 bits (103), Expect = 0.005
 Identities = 23/46 (50%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
 Frame = +3

Query: 438 MRTIQRVETVLSINQYDAEN---GKEPLGNCCAPGSSLPLFKFPRR 566
           M TI+R  T+LS  Q  +E    G+  LG CC PGS LPL+ F RR
Sbjct: 1   MLTIKRCPTILSNYQEGSEGLGCGRNCLGQCCVPGSKLPLYTFKRR 46


>tr|B8LL93|B8LL93_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 436

 Score = 44.3 bits (103), Expect = 0.005
 Identities = 23/46 (50%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
 Frame = +3

Query: 438 MRTIQRVETVLSINQYDAEN---GKEPLGNCCAPGSSLPLFKFPRR 566
           M TI+R  T+LS  Q  +E    G+  LG CC PGS LPL+ F RR
Sbjct: 1   MLTIKRCPTILSNYQEGSEGLGCGRNCLGQCCVPGSKLPLYTFKRR 46


>tr|B8LM04|B8LM04_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 435

 Score = 43.1 bits (100), Expect = 0.011
 Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
 Frame = +3

Query: 438 MRTIQRVETVLSINQYDAEN---GKEPLGNCCAPGSSLPLFKFPRR 566
           M TI+R  T++S  Q  +E    G+  LG CC PGS LPL+ F RR
Sbjct: 1   MLTIKRCPTIVSNYQEGSEGLGCGRNCLGQCCVPGSKLPLYTFKRR 46


>tr|A9SSY3|A9SSY3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_166416 PE=4 SV=1
          Length = 460

 Score = 42.4 bits (98), Expect = 0.019
 Identities = 21/43 (48%), Positives = 30/43 (69%), Gaps = 3/43 (6%)
 Frame = +3

Query: 438 MRTIQRVETVLSINQYDAEN---GKEPLGNCCAPGSSLPLFKF 557
           M TI+RVETV+S++Q   +    G++ LG CC PG+ LPL+ F
Sbjct: 1   MLTIKRVETVVSMHQQLEQVPGCGRDCLGTCCIPGAKLPLYAF 43


>tr|A9T7K7|A9T7K7_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_3338 PE=4 SV=1
          Length = 386

 Score = 41.6 bits (96), Expect = 0.032
 Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
 Frame = +3

Query: 438 MRTIQRVETVLSINQYDAEN---GKEPLGNCCAPGSSLPLFKF 557
           M TI+RVETV+S+ Q   +    G++ LGNCC  G+ LPL+ F
Sbjct: 1   MLTIRRVETVVSMQQQLDQGSGCGRDCLGNCCIRGTKLPLYTF 43


>tr|B6TMF8|B6TMF8_MAIZE VTC2 OS=Zea mays PE=2 SV=1
          Length = 435

 Score = 40.4 bits (93), Expect = 0.072
 Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 5/43 (11%)
 Frame = +3

Query: 444 TIQRVETVLSINQYDAEN-----GKEPLGNCCAPGSSLPLFKF 557
           TI+RV TV+S  Q DA+      G+  LG+CC P S LPL+ F
Sbjct: 6   TIRRVPTVVSNYQEDADKPRAGCGRNCLGDCCLPASKLPLYAF 48


>tr|A7PRA4|A7PRA4_VITVI Chromosome chr14 scaffold_26, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00022399001
           PE=4 SV=1
          Length = 433

 Score = 40.0 bits (92), Expect = 0.094
 Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
 Frame = +3

Query: 438 MRTIQRVETVLSINQYDAEN----GKEPLGNCCAPGSSLPLFKFPRRLR 572
           M TI+RV TV+S  Q +A      G+  LG+CC P S LPL+ F + ++
Sbjct: 1   MLTIKRVPTVVSNYQEEASESLGCGRNCLGHCCLPVSKLPLYTFKKNVK 49


>tr|Q2QWM9|Q2QWM9_ORYSJ Os12g0190000 protein OS=Oryza sativa subsp.
           japonica GN=Os12g0190000 PE=4 SV=1
          Length = 438

 Score = 37.0 bits (84), Expect = 0.80
 Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 10/48 (20%)
 Frame = +3

Query: 444 TIQRVETVLSINQYDAEN----------GKEPLGNCCAPGSSLPLFKF 557
           TI+RV TV+S  Q DA            G++ LG+CC P S LPL+ F
Sbjct: 6   TIKRVPTVVSNYQEDAAATAGERPRAGCGRDCLGDCCLPDSKLPLYAF 53


>tr|A8HUV4|A8HUV4_CHLRE Predicted protein OS=Chlamydomonas
           reinhardtii GN=CHLREDRAFT_188099 PE=4 SV=1
          Length = 55

 Score = 34.7 bits (78), Expect = 4.0
 Identities = 16/24 (66%), Positives = 16/24 (66%)
 Frame = +2

Query: 290 GGRGALPSEGGHPSDLTYLAGGGQ 361
           GGRGA PS GG P D    AGGGQ
Sbjct: 32  GGRGAAPSCGGKPKDALSKAGGGQ 55


>tr|Q3K8W1|Q3K8W1_PSEPF Glucose-1-phosphate thymidylyltransferase
           OS=Pseudomonas fluorescens (strain Pf0-1) GN=Pf01_4056
           PE=3 SV=1
          Length = 296

 Score = 34.7 bits (78), Expect = 4.0
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +1

Query: 463 LFCPLISMMLRMGRSLLVIAVPQDLPCLCLSFQEGSVF 576
           +F PL  +ML   R +L+I+ P+DLPC      +GS++
Sbjct: 39  IFYPLSVLMLAGMREILIISTPEDLPCFKKLLGDGSLY 76