DK952222 |
Clone id |
TST38A01NGRL0013_I05 |
Library |
TST38 |
Length |
528 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0013_I05. 5' end sequence. |
Accession |
DK952222 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL71Contig1 |
Sequence |
CATGGGTATGAGGGTGTTGTAACCAGGTGGGGCGTGACAAGGCTACCCCGCAAGACTCAT CGTGGTCTCCGTAAGGTTGCTTGTATTGGAGCTTGGCACCCTGCTCGCGTGTCCTTCACA GTTGCAAGAGCTGGGCAAAGAGGTTATCACCATAGGACTGAAATGAACAAGAAGGTCTAT AAGATTGGGAAGGCTGGGGATGAGTCTCACAAAGCCTCTACTGAGTTTGACACTACTGAC AAGGACATAACTCCCATGGGTGGCTTTGCTCACTATGGTATCGTGAAGGAAGATTTTGTC ATGATCAAAGGTTGCTGCATGGGCCCCAAGAAGAGAGTCATCACTCTTCGGAAGTCCCTT TACAAGCAGACTTCTCGCAGTGCCTTGGAGGAGATCAAGTTGAAGTTTATTGACACGTCA TCTAAATTTGGGCATGGTCGCTTCCAGACTTCCCAGGAGAAGGCAAAAACTTTTGGCAGG GTGAAGTGAGTACTTTTTAGGGAGGGGAGAAGCTAGTTGTTTTGGAAG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P35684 |
Definition |
sp|P35684|RL3_ORYSJ 60S ribosomal protein L3 OS=Oryza sativa subsp. japonica |
Align length |
161 |
Score (bit) |
292.0 |
E-value |
8.0e-79 |
Report |
 |
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7QC77 |
Definition |
tr|A7QC77|A7QC77_VITVI Chromosome undetermined scaffold_77, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
161 |
Score (bit) |
298.0 |
E-value |
1.0e-79 |
Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK952222|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0013_I05, 5' (528 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7QC77|A7QC77_VITVI Chromosome undetermined scaffold_77, whol... 298 1e-79 tr|A5BAZ0|A5BAZ0_VITVI Putative uncharacterized protein OS=Vitis... 298 1e-79 tr|A9NZI7|A9NZI7_PICSI Putative uncharacterized protein OS=Picea... 297 3e-79 tr|B4FFZ6|B4FFZ6_MAIZE 60S ribosomal protein L3 OS=Zea mays PE=2... 294 2e-78 tr|B4FBM9|B4FBM9_MAIZE Putative uncharacterized protein OS=Zea m... 294 2e-78 tr|Q6TKQ9|Q6TKQ9_TOBAC Ribosomal protein L3B OS=Nicotiana tabacu... 294 2e-78 tr|Q9SXL7|Q9SXL7_CUCSA Csf-3 protein OS=Cucumis sativus GN=Csf-3... 293 3e-78 tr|A9NRB1|A9NRB1_PICSI Putative uncharacterized protein OS=Picea... 293 3e-78 tr|A5BU35|A5BU35_VITVI Putative uncharacterized protein (Chromos... 293 3e-78 tr|A9TUZ9|A9TUZ9_PHYPA Predicted protein OS=Physcomitrella paten... 293 5e-78 tr|Q7X744|Q7X744_WHEAT Ribosomal protein L3 (Ribosomal protein L... 292 6e-78 tr|Q6TKR0|Q6TKR0_TOBAC Ribosomal protein L3A OS=Nicotiana tabacu... 292 6e-78 tr|A1YE31|A1YE31_WHEAT Ribosomal protein L3-A3 OS=Triticum aesti... 292 6e-78 tr|Q53JG0|Q53JG0_ORYSJ 60S ribosomal protein L3, putative, expre... 292 8e-78 tr|Q2VCJ2|Q2VCJ2_SOLTU Ribosomal protein L3-like OS=Solanum tube... 292 8e-78 tr|Q0IPU6|Q0IPU6_ORYSJ Os12g0167900 protein OS=Oryza sativa subs... 292 8e-78 tr|A5D934|A5D934_ORYSA Ribosomal protein L3B OS=Oryza sativa GN=... 292 8e-78 tr|A2ZIF8|A2ZIF8_ORYSI Putative uncharacterized protein OS=Oryza... 292 8e-78 tr|A2ZBV5|A2ZBV5_ORYSI Putative uncharacterized protein OS=Oryza... 292 8e-78 tr|Q7X748|Q7X748_WHEAT Ribosomal protein L3 (Ribosomal protein L... 291 1e-77 tr|Q6V959|Q6V959_WHEAT Ribosomal protein L3 (Ribosomal protein L... 291 1e-77 tr|Q08G39|Q08G39_WHEAT Ribosomal protein L3 OS=Triticum aestivum... 291 1e-77 tr|A9T2B3|A9T2B3_PHYPA Predicted protein OS=Physcomitrella paten... 291 1e-77 tr|A9P806|A9P806_POPTR Putative uncharacterized protein OS=Popul... 291 1e-77 tr|A1YE34|A1YE34_WHEAT Ribosomal protein L3-B2 OS=Triticum aesti... 291 1e-77 tr|A9PCQ3|A9PCQ3_POPTR Putative uncharacterized protein OS=Popul... 290 2e-77 tr|A9SGV3|A9SGV3_PHYPA Predicted protein OS=Physcomitrella paten... 290 3e-77 tr|Q6SKP4|Q6SKP4_SOLLC Ribosomal protein L3 OS=Solanum lycopersi... 290 4e-77 tr|Q9AT58|Q9AT58_LOLPR L3 ribosomal protein (Fragment) OS=Lolium... 287 3e-76 tr|A9PB80|A9PB80_POPTR Putative uncharacterized protein OS=Popul... 286 6e-76
>tr|A7QC77|A7QC77_VITVI Chromosome undetermined scaffold_77, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00035280001 PE=3 SV=1 Length = 219
Score = 298 bits (763), Expect = 1e-79 Identities = 137/161 (85%), Positives = 151/161 (93%) Frame = +1
Query: 4 GYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQRGYHHRTEMNKKVYK 183 GYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQ GYHHRTEMNKK+YK Sbjct: 58 GYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYK 117
Query: 184 IGKAGDESHKASTEFDTTDKDITPMGGFAHYGIVKEDFVMIKGCCMGPKKRVITLRKSLY 363 +GK G ESH A TEFD T+KDITPMGGF HYG+VK+D+++IKGCC+GPKKRV+TLR+SL Sbjct: 118 VGKTGQESHSAMTEFDRTEKDITPMGGFPHYGVVKDDYLLIKGCCVGPKKRVVTLRQSLL 177
Query: 364 KQTSRSALEEIKLKFIDTSSKFGHGRFQTSQEKAKTFGRVK 486 KQTSR A+EEIKLKFIDTSSKFGHGRFQT+QEKAK FGR+K Sbjct: 178 KQTSRVAMEEIKLKFIDTSSKFGHGRFQTTQEKAKFFGRLK 218
>tr|A5BAZ0|A5BAZ0_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042376 PE=3 SV=1 Length = 389
Score = 298 bits (763), Expect = 1e-79 Identities = 137/161 (85%), Positives = 151/161 (93%) Frame = +1
Query: 4 GYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQRGYHHRTEMNKKVYK 183 GYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQ GYHHRTEMNKK+YK Sbjct: 228 GYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYK 287
Query: 184 IGKAGDESHKASTEFDTTDKDITPMGGFAHYGIVKEDFVMIKGCCMGPKKRVITLRKSLY 363 +GK G ESH A TEFD T+KDITPMGGF HYG+VK+D+++IKGCC+GPKKRV+TLR+SL Sbjct: 288 VGKTGQESHSAMTEFDRTEKDITPMGGFPHYGVVKDDYLLIKGCCVGPKKRVVTLRQSLL 347
Query: 364 KQTSRSALEEIKLKFIDTSSKFGHGRFQTSQEKAKTFGRVK 486 KQTSR A+EEIKLKFIDTSSKFGHGRFQT+QEKAK FGR+K Sbjct: 348 KQTSRVAMEEIKLKFIDTSSKFGHGRFQTTQEKAKFFGRLK 388
>tr|A9NZI7|A9NZI7_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 389
Score = 297 bits (760), Expect = 3e-79 Identities = 137/161 (85%), Positives = 152/161 (94%) Frame = +1
Query: 4 GYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQRGYHHRTEMNKKVYK 183 GYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQ GYHHRTEMNKK+YK Sbjct: 228 GYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYK 287
Query: 184 IGKAGDESHKASTEFDTTDKDITPMGGFAHYGIVKEDFVMIKGCCMGPKKRVITLRKSLY 363 IGKA ESHKA TEFD T+KDITPMGGF HYG++K+D++MI+GCC+G KKRV+TLR+SL Sbjct: 288 IGKADQESHKAMTEFDRTEKDITPMGGFPHYGVLKDDYIMIRGCCVGTKKRVVTLRQSLL 347
Query: 364 KQTSRSALEEIKLKFIDTSSKFGHGRFQTSQEKAKTFGRVK 486 KQTSR+ALEEIKLKFIDTSSKFGHGRFQT+QEKAK FG++K Sbjct: 348 KQTSRTALEEIKLKFIDTSSKFGHGRFQTTQEKAKIFGKLK 388
>tr|B4FFZ6|B4FFZ6_MAIZE 60S ribosomal protein L3 OS=Zea mays PE=2 SV=1 Length = 389
Score = 294 bits (753), Expect = 2e-78 Identities = 138/161 (85%), Positives = 150/161 (93%) Frame = +1
Query: 4 GYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQRGYHHRTEMNKKVYK 183 GYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVS+TVARAGQ GYHHRTEMNKKVYK Sbjct: 228 GYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYK 287
Query: 184 IGKAGDESHKASTEFDTTDKDITPMGGFAHYGIVKEDFVMIKGCCMGPKKRVITLRKSLY 363 IGKAG E+H ASTEFD T+KDITPMGGF HYGIVK D++MIKGCC+GPKKRV+TLR+SL Sbjct: 288 IGKAGQETHDASTEFDRTEKDITPMGGFPHYGIVKGDYLMIKGCCVGPKKRVVTLRQSLL 347
Query: 364 KQTSRSALEEIKLKFIDTSSKFGHGRFQTSQEKAKTFGRVK 486 KQTSR ALEEIKLKFIDTSSKFGHGRFQT+ EK + FG++K Sbjct: 348 KQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388
>tr|B4FBM9|B4FBM9_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 389
Score = 294 bits (753), Expect = 2e-78 Identities = 138/161 (85%), Positives = 150/161 (93%) Frame = +1
Query: 4 GYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQRGYHHRTEMNKKVYK 183 GYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVS+TVARAGQ GYHHRTEMNKKVYK Sbjct: 228 GYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYK 287
Query: 184 IGKAGDESHKASTEFDTTDKDITPMGGFAHYGIVKEDFVMIKGCCMGPKKRVITLRKSLY 363 IGKAG E+H ASTEFD T+KDITPMGGF HYGIVK D++MIKGCC+GPKKRV+TLR+SL Sbjct: 288 IGKAGQETHDASTEFDRTEKDITPMGGFPHYGIVKGDYLMIKGCCVGPKKRVVTLRQSLL 347
Query: 364 KQTSRSALEEIKLKFIDTSSKFGHGRFQTSQEKAKTFGRVK 486 KQTSR ALEEIKLKFIDTSSKFGHGRFQT+ EK + FG++K Sbjct: 348 KQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388
>tr|Q6TKQ9|Q6TKQ9_TOBAC Ribosomal protein L3B OS=Nicotiana tabacum GN=RPL3B PE=2 SV=1 Length = 409
Score = 294 bits (752), Expect = 2e-78 Identities = 137/161 (85%), Positives = 150/161 (93%) Frame = +1
Query: 4 GYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQRGYHHRTEMNKKVYK 183 GYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVS+TVARAGQ GYHHRTE+NKKVY+ Sbjct: 248 GYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKKVYR 307
Query: 184 IGKAGDESHKASTEFDTTDKDITPMGGFAHYGIVKEDFVMIKGCCMGPKKRVITLRKSLY 363 +GKAG ESH A TEFD T+KDITPMGGF HYGIVKEDF++IKGCC+GPKKRV+TLR+SL Sbjct: 308 LGKAGQESHSAITEFDRTEKDITPMGGFPHYGIVKEDFLLIKGCCVGPKKRVVTLRQSLL 367
Query: 364 KQTSRSALEEIKLKFIDTSSKFGHGRFQTSQEKAKTFGRVK 486 QTSR ALEEIKLKFIDTSSKFGHGRFQT+QEK K +GR+K Sbjct: 368 NQTSRVALEEIKLKFIDTSSKFGHGRFQTTQEKDKFYGRLK 408
>tr|Q9SXL7|Q9SXL7_CUCSA Csf-3 protein OS=Cucumis sativus GN=Csf-3 PE=2 SV=1 Length = 219
Score = 293 bits (751), Expect = 3e-78 Identities = 141/161 (87%), Positives = 148/161 (91%) Frame = +1
Query: 4 GYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQRGYHHRTEMNKKVYK 183 GYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQ GYHHRTEMNKKVYK Sbjct: 58 GYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYK 117
Query: 184 IGKAGDESHKASTEFDTTDKDITPMGGFAHYGIVKEDFVMIKGCCMGPKKRVITLRKSLY 363 IGK G ESH A TEFD T+KDITPMGGF HYGIVK D++MIKG C+GPKKRVITLR+SL Sbjct: 118 IGKTGQESHTAITEFDRTEKDITPMGGFPHYGIVKSDYLMIKGGCVGPKKRVITLRQSLL 177
Query: 364 KQTSRSALEEIKLKFIDTSSKFGHGRFQTSQEKAKTFGRVK 486 KQTSR ALEEIKLKFIDTSSKFGHGRFQT+QEK K FGR+K Sbjct: 178 KQTSRVALEEIKLKFIDTSSKFGHGRFQTTQEKQKFFGRLK 218
>tr|A9NRB1|A9NRB1_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 389
Score = 293 bits (751), Expect = 3e-78 Identities = 136/161 (84%), Positives = 149/161 (92%) Frame = +1
Query: 4 GYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQRGYHHRTEMNKKVYK 183 GYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQ GYHHRTEMNKK+YK Sbjct: 228 GYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYK 287
Query: 184 IGKAGDESHKASTEFDTTDKDITPMGGFAHYGIVKEDFVMIKGCCMGPKKRVITLRKSLY 363 IGK ESH A TEFD T+KDITPMGGF HYG+VK+D++MI+GCCMG KKRV+TLR+SL Sbjct: 288 IGKKDQESHNAMTEFDRTEKDITPMGGFPHYGVVKDDYIMIRGCCMGTKKRVVTLRQSLL 347
Query: 364 KQTSRSALEEIKLKFIDTSSKFGHGRFQTSQEKAKTFGRVK 486 KQTSR+ALEEIKLKFIDTSSKFGHGRFQT QEKAK +G++K Sbjct: 348 KQTSRTALEEIKLKFIDTSSKFGHGRFQTIQEKAKIYGKLK 388
>tr|A5BU35|A5BU35_VITVI Putative uncharacterized protein (Chromosome chr18 scaffold_59, whole genome shotgun sequence) OS=Vitis vinifera GN=GSVIVT00031743001 PE=3 SV=1 Length = 389
Score = 293 bits (751), Expect = 3e-78 Identities = 137/161 (85%), Positives = 149/161 (92%) Frame = +1
Query: 4 GYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQRGYHHRTEMNKKVYK 183 GYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQ GYHHRTEMNKK+YK Sbjct: 228 GYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYK 287
Query: 184 IGKAGDESHKASTEFDTTDKDITPMGGFAHYGIVKEDFVMIKGCCMGPKKRVITLRKSLY 363 +GK ESH A TEFD T+KDITPMGGF HYG+VK+D+VMIKGCC+GPKKRV+TLR+SL Sbjct: 288 LGKIEQESHTALTEFDRTEKDITPMGGFPHYGVVKDDYVMIKGCCVGPKKRVVTLRQSLL 347
Query: 364 KQTSRSALEEIKLKFIDTSSKFGHGRFQTSQEKAKTFGRVK 486 KQTSR ALEEIKLKFIDTSSKFGHGRFQT+QEK K +GR+K Sbjct: 348 KQTSRVALEEIKLKFIDTSSKFGHGRFQTTQEKQKFYGRMK 388
>tr|A9TUZ9|A9TUZ9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_225706 PE=3 SV=1 Length = 392
Score = 293 bits (749), Expect = 5e-78 Identities = 141/163 (86%), Positives = 152/163 (93%), Gaps = 1/163 (0%) Frame = +1
Query: 1 HGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQRGYHHRTEMNKKVY 180 HGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQ GYHHRTEMNKKVY Sbjct: 227 HGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVY 286
Query: 181 KIGKAGD-ESHKASTEFDTTDKDITPMGGFAHYGIVKEDFVMIKGCCMGPKKRVITLRKS 357 K+GK+ D ES ASTEFD T+K+ITPMGGFAHYGIV+ED++MIKG MGPKKRVITLR+S Sbjct: 287 KVGKSADKESFSASTEFDVTEKEITPMGGFAHYGIVREDYLMIKGGVMGPKKRVITLRQS 346
Query: 358 LYKQTSRSALEEIKLKFIDTSSKFGHGRFQTSQEKAKTFGRVK 486 LYKQ SRSALE+IKLKFIDTSSKFGHGRFQTS EKAK +G+VK Sbjct: 347 LYKQVSRSALEDIKLKFIDTSSKFGHGRFQTSLEKAKVYGKVK 389
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