DK952229 |
Clone id |
TST38A01NGRL0013_I12 |
Library |
TST38 |
Length |
523 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0013_I12. 5' end sequence. |
Accession |
DK952229 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL687Contig1 |
Sequence |
GCTGGCAGCAGGCAGAGTAGCCATGGTCTCTGAAGCTTCGTCCTTAGCTGCATCGTCTTC ATATAGCTCCAGGGACTCCATGCCGGCTTCCATTTCCTCGTTCACTCTCGTGAGAGTTTC CAGGAATGCAATGTGTGTGCGATCCTCTTCCGCTGCTGTGGCCGAAGCTCCTGCTTCCGC TGTTGAGATGCCCCGACTTAAGTCCATTTATGTCAACAAGGTCGTACCCGCCCTCAAAGA GGAGTTCCAGTATACAAACTTGCTGCAGATTCCTAGAGTTGAAAAGGTTGTCATCAACTG TGGCATTGGAGAAGCCTCTCAAAATGCCAAGATTTTGGAAGCTGGTATAAAAGACATCTC CACTGTCACTGGGCAGAGGCCCAACATTACTCGTGCCAAGAAAGCCATAGCCGGTTTTAA GATTCGCCAGGGTGTGCCAGTTGGTGTTGCAGTGACTTTGAGAGGAGAGCTCATGTATTC TTTCCTGGATCGACTGCTAAATTTGGTGCTTCCACGAACTCGA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P82192 |
Definition |
sp|P82192|RK5_SPIOL 50S ribosomal protein L5, chloroplastic OS=Spinacia oleracea |
Align length |
110 |
Score (bit) |
155.0 |
E-value |
1.0e-37 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK952229|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0013_I12, 5' (523 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P82192|RK5_SPIOL 50S ribosomal protein L5, chloroplastic OS=S... 155 1e-37 sp|O04603|RK5_ARATH 50S ribosomal protein L5, chloroplastic OS=A... 152 9e-37 sp|Q8M9V3|RK5_CHAGL 50S ribosomal protein L5, chloroplastic OS=C... 152 1e-36 sp|B0C1E5|RL5_ACAM1 50S ribosomal protein L5 OS=Acaryochloris ma... 149 8e-36 sp|B0JHZ1|RL5_MICAN 50S ribosomal protein L5 OS=Microcystis aeru... 148 1e-35 sp|Q8YPJ1|RL5_ANASP 50S ribosomal protein L5 OS=Anabaena sp. (st... 148 2e-35 sp|Q3MFA9|RL5_ANAVT 50S ribosomal protein L5 OS=Anabaena variabi... 147 2e-35 sp|A6YGC9|RK5_LEPTE 50S ribosomal protein L5, chloroplastic OS=L... 147 2e-35 sp|Q8DMM0|RL5_THEEB 50S ribosomal protein L5 OS=Thermosynechococ... 147 3e-35 sp|A2CI45|RK5_CHLAT 50S ribosomal protein L5, chloroplastic OS=C... 146 7e-35 sp|P73308|RL5_SYNY3 50S ribosomal protein L5 OS=Synechocystis sp... 145 9e-35 sp|Q2JIL5|RL5_SYNJB 50S ribosomal protein L5 OS=Synechococcus sp... 144 2e-34 sp|Q1ACG2|RK5_CHAVU 50S ribosomal protein L5, chloroplastic OS=C... 144 3e-34 sp|Q2JQN2|RL5_SYNJA 50S ribosomal protein L5 OS=Synechococcus sp... 144 3e-34 sp|Q32RN3|RK5_ZYGCR 50S ribosomal protein L5, chloroplastic OS=Z... 142 7e-34 sp|Q7NEG4|RL5_GLOVI 50S ribosomal protein L5 OS=Gloeobacter viol... 142 1e-33 sp|Q250M0|RL5_DESHY 50S ribosomal protein L5 OS=Desulfitobacteri... 142 1e-33 sp|Q3A9S8|RL5_CARHZ 50S ribosomal protein L5 OS=Carboxydothermus... 142 1e-33 sp|Q9MUU5|RK5_MESVI 50S ribosomal protein L5, chloroplastic OS=M... 142 1e-33 sp|Q47LK5|RL5_THEFY 50S ribosomal protein L5 OS=Thermobifida fus... 141 2e-33 sp|P14807|RK5_CYAPA 50S ribosomal protein L5, cyanelle OS=Cyanop... 141 2e-33 sp|Q5L411|RL5_GEOKA 50S ribosomal protein L5 OS=Geobacillus kaus... 140 3e-33 sp|Q9TL23|RK5_NEPOL 50S ribosomal protein L5, chloroplastic OS=N... 140 3e-33 sp|A5GVX2|RL5_SYNR3 50S ribosomal protein L5 OS=Synechococcus sp... 140 4e-33 sp|Q0AUJ2|RL5_SYNWW 50S ribosomal protein L5 OS=Syntrophomonas w... 140 5e-33 sp|P08895|RL5_BACST 50S ribosomal protein L5 OS=Bacillus stearot... 139 6e-33 sp|B2X1Y4|RK5_OEDCA 50S ribosomal protein L5, chloroplastic OS=O... 139 6e-33 sp|Q06SG6|RK5_STIHE 50S ribosomal protein L5, chloroplastic OS=S... 139 8e-33 sp|Q8R7W6|RL5_THETN 50S ribosomal protein L5 OS=Thermoanaerobact... 139 1e-32 sp|A8MLF2|RL5_ALKOO 50S ribosomal protein L5 OS=Alkaliphilus ore... 139 1e-32
>sp|P82192|RK5_SPIOL 50S ribosomal protein L5, chloroplastic OS=Spinacia oleracea GN=RPL5 PE=1 SV=2 Length = 220
Score = 155 bits (392), Expect = 1e-37 Identities = 71/110 (64%), Positives = 95/110 (86%) Frame = +2
Query: 194 RLKSIYVNKVVPALKEEFQYTNLLQIPRVEKVVINCGIGEASQNAKILEAGIKDISTVTG 373 RLK+ Y+ K+VP LKEEF Y+N+L++P+V K+V+NCGIG+ASQNAK L+A I +++ +TG Sbjct: 18 RLKTNYIEKMVPLLKEEFSYSNILEVPKVVKIVVNCGIGDASQNAKGLDAAINELALITG 77
Query: 374 QRPNITRAKKAIAGFKIRQGVPVGVAVTLRGELMYSFLDRLLNLVLPRTR 523 QRP T+AK +IAGFK+R+G+ +G+AVTLRG LMYSFLDRL+NL LPRTR Sbjct: 78 QRPVKTKAKTSIAGFKVREGMTLGIAVTLRGNLMYSFLDRLINLALPRTR 127
>sp|O04603|RK5_ARATH 50S ribosomal protein L5, chloroplastic OS=Arabidopsis thaliana GN=RPL5 PE=1 SV=1 Length = 262
Score = 152 bits (384), Expect = 9e-37 Identities = 69/110 (62%), Positives = 95/110 (86%) Frame = +2
Query: 194 RLKSIYVNKVVPALKEEFQYTNLLQIPRVEKVVINCGIGEASQNAKILEAGIKDISTVTG 373 RLK+ Y+ +++PALKEEF+Y N+ Q+P+V+K+V+NCGIG+A+QN K LEA +KDI+ +TG Sbjct: 58 RLKTAYLERIIPALKEEFKYVNIHQVPKVQKIVVNCGIGDAAQNDKGLEAAMKDIALITG 117
Query: 374 QRPNITRAKKAIAGFKIRQGVPVGVAVTLRGELMYSFLDRLLNLVLPRTR 523 Q+P TRA+ +IA FKIR+ P+G+AVTLRG++MYSFLDRL+NL LPRTR Sbjct: 118 QKPIKTRARASIATFKIREDQPLGIAVTLRGDVMYSFLDRLINLALPRTR 167
>sp|Q8M9V3|RK5_CHAGL 50S ribosomal protein L5, chloroplastic OS=Chaetosphaeridium globosum GN=rpl5 PE=3 SV=1 Length = 186
Score = 152 bits (383), Expect = 1e-36 Identities = 73/110 (66%), Positives = 92/110 (83%) Frame = +2
Query: 194 RLKSIYVNKVVPALKEEFQYTNLLQIPRVEKVVINCGIGEASQNAKILEAGIKDISTVTG 373 RLKSIY+N V+P L EE +Y N+ QIPR++K+VINCGIGEASQNAK LE I+D+S + G Sbjct: 4 RLKSIYLNNVIPKLNEEAKYKNVHQIPRLKKIVINCGIGEASQNAKTLEYTIRDLSIIAG 63
Query: 374 QRPNITRAKKAIAGFKIRQGVPVGVAVTLRGELMYSFLDRLLNLVLPRTR 523 QRP + RAKKAIA F++R+ +PVGV+VTLRG+ MY+FLDRL+NL LPR R Sbjct: 64 QRPLVKRAKKAIASFQLRKKMPVGVSVTLRGDAMYAFLDRLINLALPRIR 113
>sp|B0C1E5|RL5_ACAM1 50S ribosomal protein L5 OS=Acaryochloris marina (strain MBIC 11017) GN=rplE PE=3 SV=1 Length = 181
Score = 149 bits (376), Expect = 8e-36 Identities = 71/110 (64%), Positives = 92/110 (83%) Frame = +2
Query: 194 RLKSIYVNKVVPALKEEFQYTNLLQIPRVEKVVINCGIGEASQNAKILEAGIKDISTVTG 373 RLK++Y++ VP L+E+F+Y N +IP+V KV +N G+GEASQNAK LE +++++ +TG Sbjct: 4 RLKTLYLDTAVPKLQEQFKYKNAHEIPKVTKVSVNRGLGEASQNAKALERSLEELAVITG 63
Query: 374 QRPNITRAKKAIAGFKIRQGVPVGVAVTLRGELMYSFLDRLLNLVLPRTR 523 QRP +TRAKKAIAGFKIRQG+PVGV VTLRGE MY+FLDRL+NL LPR R Sbjct: 64 QRPVVTRAKKAIAGFKIRQGMPVGVMVTLRGERMYAFLDRLVNLALPRIR 113
>sp|B0JHZ1|RL5_MICAN 50S ribosomal protein L5 OS=Microcystis aeruginosa (strain NIES-843) GN=rplE PE=3 SV=1 Length = 179
Score = 148 bits (374), Expect = 1e-35 Identities = 70/110 (63%), Positives = 91/110 (82%) Frame = +2
Query: 194 RLKSIYVNKVVPALKEEFQYTNLLQIPRVEKVVINCGIGEASQNAKILEAGIKDISTVTG 373 +LK+ Y +VP LKE+F YTN+ Q+P+V K+ +N G+GEASQNAK LE+ ++ST+TG Sbjct: 4 KLKTTYQETIVPKLKEQFGYTNIHQVPKVIKITVNRGLGEASQNAKALESSKAELSTITG 63
Query: 374 QRPNITRAKKAIAGFKIRQGVPVGVAVTLRGELMYSFLDRLLNLVLPRTR 523 Q+P +TRAKKAIAGFKIR+G+PVGV VTLRG+ MY+FLDRL+NL LPR R Sbjct: 64 QQPVVTRAKKAIAGFKIREGMPVGVMVTLRGDRMYAFLDRLINLALPRIR 113
>sp|Q8YPJ1|RL5_ANASP 50S ribosomal protein L5 OS=Anabaena sp. (strain PCC 7120) GN=rplE PE=3 SV=1 Length = 182
Score = 148 bits (373), Expect = 2e-35 Identities = 68/110 (61%), Positives = 92/110 (83%) Frame = +2
Query: 194 RLKSIYVNKVVPALKEEFQYTNLLQIPRVEKVVINCGIGEASQNAKILEAGIKDISTVTG 373 RLK++Y +VP L ++FQYTN+ Q+P++ K+ +N G+GEA+QNAK LEA + +I+T+TG Sbjct: 5 RLKTLYQETIVPKLTQQFQYTNVHQVPKLVKITVNRGLGEAAQNAKSLEASLTEIATITG 64
Query: 374 QRPNITRAKKAIAGFKIRQGVPVGVAVTLRGELMYSFLDRLLNLVLPRTR 523 Q+P +TRAKKAIAGFKIRQG+PVG+ VTLRGE MY+F DRL++L LPR R Sbjct: 65 QKPVVTRAKKAIAGFKIRQGMPVGIMVTLRGERMYAFFDRLISLSLPRIR 114
>sp|Q3MFA9|RL5_ANAVT 50S ribosomal protein L5 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplE PE=3 SV=1 Length = 182
Score = 147 bits (372), Expect = 2e-35 Identities = 67/110 (60%), Positives = 92/110 (83%) Frame = +2
Query: 194 RLKSIYVNKVVPALKEEFQYTNLLQIPRVEKVVINCGIGEASQNAKILEAGIKDISTVTG 373 RLK++Y ++P L ++FQYTN+ Q+P++ K+ +N G+GEA+QNAK LEA + +I+T+TG Sbjct: 5 RLKTLYQETIIPKLTQQFQYTNVHQVPKLVKITVNRGLGEAAQNAKSLEASLTEIATITG 64
Query: 374 QRPNITRAKKAIAGFKIRQGVPVGVAVTLRGELMYSFLDRLLNLVLPRTR 523 Q+P +TRAKKAIAGFKIRQG+PVG+ VTLRGE MY+F DRL++L LPR R Sbjct: 65 QKPVVTRAKKAIAGFKIRQGMPVGIMVTLRGERMYAFFDRLISLSLPRIR 114
>sp|A6YGC9|RK5_LEPTE 50S ribosomal protein L5, chloroplastic OS=Leptosira terrestris GN=rpl5 PE=3 SV=1 Length = 186
Score = 147 bits (372), Expect = 2e-35 Identities = 70/110 (63%), Positives = 90/110 (81%) Frame = +2
Query: 194 RLKSIYVNKVVPALKEEFQYTNLLQIPRVEKVVINCGIGEASQNAKILEAGIKDISTVTG 373 RLK Y+ +VP L E+F Y N +Q+PR+EK+VIN GIG+ASQNAK+LE+ +K+++ + G Sbjct: 5 RLKKYYLQTIVPKLIEQFAYKNQMQVPRLEKIVINRGIGDASQNAKVLESSLKELTIIAG 64
Query: 374 QRPNITRAKKAIAGFKIRQGVPVGVAVTLRGELMYSFLDRLLNLVLPRTR 523 Q+ ITR+KKAIAGFK+RQ +PVGV VTLRGE MYSFLDRL+NL LPR R Sbjct: 65 QKGIITRSKKAIAGFKLRQNLPVGVCVTLRGERMYSFLDRLINLALPRIR 114
>sp|Q8DMM0|RL5_THEEB 50S ribosomal protein L5 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplE PE=3 SV=1 Length = 181
Score = 147 bits (371), Expect = 3e-35 Identities = 71/110 (64%), Positives = 90/110 (81%) Frame = +2
Query: 194 RLKSIYVNKVVPALKEEFQYTNLLQIPRVEKVVINCGIGEASQNAKILEAGIKDISTVTG 373 RLK Y VVP L ++FQY N+ Q+P++ KV +N G+GEA+QNAK LEA + +I+T+TG Sbjct: 4 RLKDHYNKTVVPQLMQQFQYKNIHQVPKIVKVTVNRGLGEAAQNAKALEATLAEIATITG 63
Query: 374 QRPNITRAKKAIAGFKIRQGVPVGVAVTLRGELMYSFLDRLLNLVLPRTR 523 Q+P +TRAKKAIAGFKIR+G+PVGVAVTLR E MY+FLDRL+NL LPR R Sbjct: 64 QKPVVTRAKKAIAGFKIRKGMPVGVAVTLRSERMYAFLDRLINLALPRIR 113
>sp|A2CI45|RK5_CHLAT 50S ribosomal protein L5, chloroplastic OS=Chlorokybus atmophyticus GN=rpl5 PE=3 SV=1 Length = 185
Score = 146 bits (368), Expect = 7e-35 Identities = 66/110 (60%), Positives = 91/110 (82%) Frame = +2
Query: 194 RLKSIYVNKVVPALKEEFQYTNLLQIPRVEKVVINCGIGEASQNAKILEAGIKDISTVTG 373 RLK+IY+ K P L+E F+Y N+ QIPR+EK++INCG+GEASQNAK L++ +K++S + G Sbjct: 4 RLKAIYLEKAAPRLREMFEYKNVHQIPRIEKIIINCGLGEASQNAKSLDSAMKELSIIAG 63
Query: 374 QRPNITRAKKAIAGFKIRQGVPVGVAVTLRGELMYSFLDRLLNLVLPRTR 523 Q+ ITRAKKAIA FK+R+ +PVG+++TLRG MY+FLDRL+NL LPR + Sbjct: 64 QKGVITRAKKAIANFKLRKDMPVGISITLRGNSMYAFLDRLINLALPRIK 113
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TXG3 |
Definition |
tr|A9TXG3|A9TXG3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
110 |
Score (bit) |
159.0 |
E-value |
6.0e-38 |
Report |
|