DK952240 |
Clone id |
TST38A01NGRL0013_J01 |
Library |
TST38 |
Length |
595 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0013_J01. 5' end sequence. |
Accession |
DK952240 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL105Contig1 |
Sequence |
CAGACAAGGCATATAAGAAAAGAAACCTTGGAAACGAGTGGAAGAAGCCCTTTGCAGGCT CCTCCCACGCCAAAGGCATCGTTCTTGAGAAGATTGGTATCGAAGCCAAGCAGCCCAACT CTGCCATTCGAAAATGTGCCAGGGTTCAGCTTATCAAGAATGGAAAGAAGATTGCGGCCT TTGTTCCAAATGATGGCTGCCTGAACTACATTGAAGAAAATGATGAAGTGTTGATTGCTG GGTTCGGGCGTAAGGGACATGCTGTTGGTGATATTCCTGGAGTGCGGTTCAAGGTTGTGA AGGTATCTGGAGTGTCTCTCCTTGCCCTTTTCAAGGAAAAGAAGGAGAAACCAAGGTCTT AAGTTTTGAGAGGATATGTGAAGGTCCAGCAGGACTTGTACCTTATTGATTAGCTTCCTG GGAATGTTCAGGAGAGATCATCACGAAAATTTTGTTAATCTCATGACATGAGCCAGCTGC TTCTTTTCGATGCATGCGTTTCCTTCTTTTGAACCATGGGATGGAGAATCATTGTGTCAG TGAAGGTAAAGATACTTTGTCTGTCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P46297 |
Definition |
sp|P46297|RS23_FRAAN 40S ribosomal protein S23 OS=Fragaria ananassa |
Align length |
119 |
Score (bit) |
235.0 |
E-value |
1.0e-61 |
Report |
![](http://dbarchive.biosciencedbc.jp/images/togodb/expand.png) BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK952240|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0013_J01, 5' (568 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P46297|RS23_FRAAN 40S ribosomal protein S23 OS=Fragaria anana... 235 1e-61 sp|Q9M5Z9|RS23_EUPES 40S ribosomal protein S23 OS=Euphorbia esul... 235 1e-61 sp|P49201|RS232_ARATH 40S ribosomal protein S23-2 OS=Arabidopsis... 234 2e-61 sp|Q9SF35|RS231_ARATH 40S ribosomal protein S23-1 OS=Arabidopsis... 230 4e-60 sp|Q86FP7|RS23_DERVA 40S ribosomal protein S23 OS=Dermacentor va... 208 2e-53 sp|Q9GRJ3|RS23_LUMRU 40S ribosomal protein S23 OS=Lumbricus rube... 205 1e-52 sp|Q962Q7|RS23_SPOFR 40S ribosomal protein S23 OS=Spodoptera fru... 205 1e-52 sp|Q6EV23|RS23_PAPDA 40S ribosomal protein S23 OS=Papilio dardan... 205 1e-52 sp|Q8T3U2|RS23_DROME 40S ribosomal protein S23 OS=Drosophila mel... 204 2e-52 sp|P90707|RS23_BRUMA 40S ribosomal protein S23 OS=Brugia malayi ... 202 9e-52 sp|P62268|RS23_RAT 40S ribosomal protein S23 OS=Rattus norvegicu... 201 2e-51 sp|Q6SA96|RS23_PIG 40S ribosomal protein S23 OS=Sus scrofa GN=RP... 201 2e-51 sp|P62267|RS23_MOUSE 40S ribosomal protein S23 OS=Mus musculus G... 201 2e-51 sp|Q90YQ1|RS23_ICTPU 40S ribosomal protein S23 OS=Ictalurus punc... 201 2e-51 sp|P62266|RS23_HUMAN 40S ribosomal protein S23 OS=Homo sapiens G... 201 2e-51 sp|P62298|RS23_CHILA 40S ribosomal protein S23 OS=Chinchilla lan... 201 2e-51 sp|Q19877|RS23_CAEEL 40S ribosomal protein S23 OS=Caenorhabditis... 201 2e-51 sp|Q3T199|RS23_BOVIN 40S ribosomal protein S23 OS=Bos taurus GN=... 201 2e-51 sp|Q9HE74|RS23_NEUCR 40S ribosomal protein S23 OS=Neurospora cra... 198 1e-50 sp|P32827|RS23_YEAST 40S ribosomal protein S23 OS=Saccharomyces ... 197 2e-50 sp|Q6YIA2|RS23_SACCA 40S ribosomal protein S23 OS=Saccharomyces ... 197 2e-50 sp|Q6YIA3|RS23_SACBA 40S ribosomal protein S23 OS=Saccharomyces ... 197 2e-50 sp|Q6FLA8|RS23_CANGA 40S ribosomal protein S23 OS=Candida glabra... 197 2e-50 sp|Q873W8|RS23_ASPFU 40S ribosomal protein S23 OS=Aspergillus fu... 196 7e-50 sp|Q8I7D5|RS23_CIOIN 40S ribosomal protein S23 OS=Ciona intestin... 194 2e-49 sp|P79057|RS23_SCHPO 40S ribosomal protein S23 OS=Schizosaccharo... 190 5e-48 sp|Q9DFR4|RS23_GILMI 40S ribosomal protein S23 OS=Gillichthys mi... 188 2e-47 sp|P06147|RS12_TETTH 40S ribosomal protein S12 OS=Tetrahymena th... 180 5e-45 sp|Q55A19|RS23_DICDI 40S ribosomal protein S23 OS=Dictyostelium ... 176 7e-44 sp|Q8SR65|RS23_ENCCU 40S ribosomal protein S23 OS=Encephalitozoo... 150 6e-36
>sp|P46297|RS23_FRAAN 40S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23 PE=2 SV=1 Length = 142
Score = 235 bits (599), Expect = 1e-61 Identities = 116/119 (97%), Positives = 118/119 (99%) Frame = +3
Query: 3 DKAYKKRNLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAF 182 DK+YKK +LGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAF Sbjct: 24 DKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAF 83
Query: 183 VPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 359 VPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS Sbjct: 84 VPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
>sp|Q9M5Z9|RS23_EUPES 40S ribosomal protein S23 OS=Euphorbia esula GN=RPS23 PE=2 SV=1 Length = 142
Score = 235 bits (599), Expect = 1e-61 Identities = 116/119 (97%), Positives = 118/119 (99%) Frame = +3
Query: 3 DKAYKKRNLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAF 182 DK+YKK +LGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAF Sbjct: 24 DKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAF 83
Query: 183 VPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 359 VPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS Sbjct: 84 VPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
>sp|P49201|RS232_ARATH 40S ribosomal protein S23-2 OS=Arabidopsis thaliana GN=RPS23B PE=2 SV=2 Length = 142
Score = 234 bits (597), Expect = 2e-61 Identities = 116/119 (97%), Positives = 117/119 (98%) Frame = +3
Query: 3 DKAYKKRNLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAF 182 DK YKK +LGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAF Sbjct: 24 DKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAF 83
Query: 183 VPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 359 VPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS Sbjct: 84 VPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
>sp|Q9SF35|RS231_ARATH 40S ribosomal protein S23-1 OS=Arabidopsis thaliana GN=RPS23A PE=2 SV=2 Length = 142
Score = 230 bits (586), Expect = 4e-60 Identities = 115/119 (96%), Positives = 115/119 (96%) Frame = +3
Query: 3 DKAYKKRNLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAF 182 DK YKK N GNEWKKPFA SSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAF Sbjct: 24 DKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAF 83
Query: 183 VPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 359 VPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS Sbjct: 84 VPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
>sp|Q86FP7|RS23_DERVA 40S ribosomal protein S23 OS=Dermacentor variabilis GN=RpS23 PE=2 SV=1 Length = 143
Score = 208 bits (529), Expect = 2e-53 Identities = 101/120 (84%), Positives = 109/120 (90%), Gaps = 1/120 (0%) Frame = +3
Query: 3 DKAYKKRNLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAA 179 DK YKK +LG WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI A Sbjct: 24 DKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITA 83
Query: 180 FVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 359 FVP DGCLNYIEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS Sbjct: 84 FVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143
>sp|Q9GRJ3|RS23_LUMRU 40S ribosomal protein S23 OS=Lumbricus rubellus GN=RPS23 PE=2 SV=1 Length = 143
Score = 205 bits (522), Expect = 1e-52 Identities = 99/120 (82%), Positives = 109/120 (90%), Gaps = 1/120 (0%) Frame = +3
Query: 3 DKAYKKRNLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAA 179 DK YKK +LG WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI A Sbjct: 24 DKDYKKSHLGTRWKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITA 83
Query: 180 FVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 359 FVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K+KKE+PRS Sbjct: 84 FVPRDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVASVSLLALYKQKKERPRS 143
>sp|Q962Q7|RS23_SPOFR 40S ribosomal protein S23 OS=Spodoptera frugiperda GN=RpS23 PE=2 SV=1 Length = 143
Score = 205 bits (521), Expect = 1e-52 Identities = 98/120 (81%), Positives = 109/120 (90%), Gaps = 1/120 (0%) Frame = +3
Query: 3 DKAYKKRNLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAA 179 DK YKK ++G WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKK+ A Sbjct: 24 DKDYKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTA 83
Query: 180 FVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 359 FVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS Sbjct: 84 FVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143
>sp|Q6EV23|RS23_PAPDA 40S ribosomal protein S23 OS=Papilio dardanus GN=RpS23 PE=2 SV=1 Length = 143
Score = 205 bits (521), Expect = 1e-52 Identities = 98/120 (81%), Positives = 109/120 (90%), Gaps = 1/120 (0%) Frame = +3
Query: 3 DKAYKKRNLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAA 179 DK YKK ++G WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKK+ A Sbjct: 24 DKDYKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTA 83
Query: 180 FVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 359 FVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS Sbjct: 84 FVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143
>sp|Q8T3U2|RS23_DROME 40S ribosomal protein S23 OS=Drosophila melanogaster GN=RpS23 PE=2 SV=1 Length = 143
Score = 204 bits (519), Expect = 2e-52 Identities = 100/120 (83%), Positives = 108/120 (90%), Gaps = 1/120 (0%) Frame = +3
Query: 3 DKAYKKRNLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAA 179 DK YKK +LG WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI A Sbjct: 24 DKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITA 83
Query: 180 FVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 359 FVP DG LNYIEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS Sbjct: 84 FVPRDGSLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143
>sp|P90707|RS23_BRUMA 40S ribosomal protein S23 OS=Brugia malayi GN=rps-23 PE=2 SV=1 Length = 143
Score = 202 bits (514), Expect = 9e-52 Identities = 97/120 (80%), Positives = 107/120 (89%), Gaps = 1/120 (0%) Frame = +3
Query: 3 DKAYKKRNLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAA 179 DK YKK +LG WK PF +SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI A Sbjct: 24 DKGYKKAHLGTRWKANPFGTASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITA 83
Query: 180 FVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 359 FVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFK+VKV+ SL+ALFK KKE+PRS Sbjct: 84 FVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKIVKVANTSLIALFKGKKERPRS 143
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7PSZ0 |
Definition |
tr|A7PSZ0|A7PSZ0_VITVI Chromosome chr8 scaffold_29, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
119 |
Score (bit) |
238.0 |
E-value |
2.0e-61 |
Report |
![](http://dbarchive.biosciencedbc.jp/images/togodb/expand.png) |