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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK952362
Clone id TST38A01NGRL0013_O04
Library
Length 650
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0013_O04. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GAGAGTCGTCTGCCAATGAGAGTATGAGAGCGGGGGTCTTGAAAAAGAAAGCAGATTTGT
AGCGTGTGTGTGCGTGAGAGAGAGAGAGATAGATAGAGAGAGAGAGAGAGAGAGCGAGTC
GAGAGGTACTCGGGTGTGTGTGTACCACCTCCCTCCATAACGGCTGTTGCTTTCTTTCTT
TTCCACAACAAGCAGGATGCCCGGAGAAGGAACAGATTGATGTGCTATCTGCTTTGAGCA
CCTCGCTTCTTGATGGCATGCTTTTATGGCTCCTGCTCATATCTGCCATACAAGTGGGCG
CTCTGATACTTATCCACTTTAAAGATTTATAGCGAGATTACTCTTTCTCTCTTTCTCTCT
GTCTGTCATCTTGAGGGCTTTTCTTGATTACACGCAGAATGCTTATTTGCTAACTTGTAT
TTGAAAGAGGATATGGCAGTTTGCTGGTTTTTCCCCGCACCGAGGCTGACTGCCCGTCCA
TGAGATTCTCTCAGTCTCCTGTACATTTTGCTGGATAGCAATCTTCCATTGGAACACTGT
GGGAAGCAGTGCCTTTTGAGCACTCCACATAGCAGAGTTGCGTAGCTGTGCATCTATNTT
CTAACCAGGTGAGTTGCATACCAAGAAGTTGTCGGGAACCTGCACGCTCG
■■Homology search results ■■ -
sp_hit_id O70514
Definition sp|O70514|FGFP1_MOUSE Fibroblast growth factor-binding protein 1 OS=Mus musculus
Align length 61
Score (bit) 35.0
E-value 0.34
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952362|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0013_O04, 5'
         (650 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O70514|FGFP1_MOUSE Fibroblast growth factor-binding protein 1...    35   0.34 
sp|Q9QY10|FGFP1_RAT Fibroblast growth factor-binding protein 1 O...    34   0.76 
sp|P06447|L_SENDZ Large structural protein OS=Sendai virus (stra...    31   6.4  
sp|O55528|L_SENDO Large structural protein OS=Sendai virus (stra...    31   6.4  
sp|Q06996|L_SENDF Large structural protein OS=Sendai virus (stra...    31   6.4  
sp|P06829|L_SENDE Large structural protein OS=Sendai virus (stra...    31   6.4  
sp|Q9DUD8|L_SENDA Large structural protein OS=Sendai virus (stra...    31   6.4  
sp|Q9MZ06|FGFP1_BOVIN Fibroblast growth factor-binding protein 1...    31   6.4  
sp|Q5JPB2|ZN831_HUMAN Zinc finger protein 831 OS=Homo sapiens GN...    30   8.4  

>sp|O70514|FGFP1_MOUSE Fibroblast growth factor-binding protein 1
           OS=Mus musculus GN=Fgfbp1 PE=1 SV=1
          Length = 251

 Score = 35.0 bits (79), Expect = 0.34
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = -2

Query: 319 KWISIRAPTCMADMSRSHKSMPSRSEVLKADSTSICSFSGHPACCGKERKQQPLWREVVH 140
           K+++    TC   ++   + +  + +  +AD    C F+G P  C K  K Q  W++V  
Sbjct: 65  KFVTKDQATCRWAVTEEEQGISLKVQCTQADQEFSCVFAGDPTDCLKHDKDQIYWKQVAR 124

Query: 139 T 137
           T
Sbjct: 125 T 125


>sp|Q9QY10|FGFP1_RAT Fibroblast growth factor-binding protein 1
           OS=Rattus norvegicus GN=Fgfbp1 PE=1 SV=1
          Length = 238

 Score = 33.9 bits (76), Expect = 0.76
 Identities = 17/76 (22%), Positives = 33/76 (43%)
 Frame = -2

Query: 364 RQREREKE*SRYKSLKWISIRAPTCMADMSRSHKSMPSRSEVLKADSTSICSFSGHPACC 185
           R ++R +        ++++    TC   ++     +  + +  +AD    C F+G P  C
Sbjct: 47  RNKQRSRTSKSMTHGRFVTKDQATCRWAVTEEELGINLKVQCTRADQEFSCVFAGDPTGC 106

Query: 184 GKERKQQPLWREVVHT 137
            K  K Q  W++V  T
Sbjct: 107 LKYDKDQTYWKQVART 122


>sp|P06447|L_SENDZ Large structural protein OS=Sendai virus (strain Z)
            GN=L PE=1 SV=1
          Length = 2228

 Score = 30.8 bits (68), Expect = 6.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 153  LHNGCCFLSFPQQAGCPEKEQIDV 224
            L+NGCC +  PQ+A  P +  +D+
Sbjct: 1367 LNNGCCIMESPQEANIPPRSTLDL 1390


>sp|O55528|L_SENDO Large structural protein OS=Sendai virus (strain
            Ohita) GN=L PE=3 SV=1
          Length = 2228

 Score = 30.8 bits (68), Expect = 6.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 153  LHNGCCFLSFPQQAGCPEKEQIDV 224
            L+NGCC +  PQ+A  P +  +D+
Sbjct: 1367 LNNGCCIMESPQEANIPPRSTLDL 1390


>sp|Q06996|L_SENDF Large structural protein OS=Sendai virus (strain
            Fushimi) GN=L PE=3 SV=1
          Length = 2228

 Score = 30.8 bits (68), Expect = 6.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 153  LHNGCCFLSFPQQAGCPEKEQIDV 224
            L+NGCC +  PQ+A  P +  +D+
Sbjct: 1367 LNNGCCIMESPQEANIPPRSTLDL 1390


>sp|P06829|L_SENDE Large structural protein OS=Sendai virus (strain
            Enders) GN=L PE=3 SV=2
          Length = 2228

 Score = 30.8 bits (68), Expect = 6.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 153  LHNGCCFLSFPQQAGCPEKEQIDV 224
            L+NGCC +  PQ+A  P +  +D+
Sbjct: 1367 LNNGCCIMESPQEANIPPRSTLDL 1390


>sp|Q9DUD8|L_SENDA Large structural protein OS=Sendai virus (strain
            Hamamatsu) GN=L PE=3 SV=1
          Length = 2228

 Score = 30.8 bits (68), Expect = 6.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 153  LHNGCCFLSFPQQAGCPEKEQIDV 224
            L+NGCC +  PQ+A  P +  +D+
Sbjct: 1367 LNNGCCIMESPQEANIPPRSTLDL 1390


>sp|Q9MZ06|FGFP1_BOVIN Fibroblast growth factor-binding protein 1
           OS=Bos taurus GN=FGFBP1 PE=1 SV=1
          Length = 234

 Score = 30.8 bits (68), Expect = 6.4
 Identities = 12/58 (20%), Positives = 29/58 (50%)
 Frame = -2

Query: 319 KWISIRAPTCMADMSRSHKSMPSRSEVLKADSTSICSFSGHPACCGKERKQQPLWREV 146
           K+++     C   +++  + +  + E  + D+T  C F+G+P  C +  K    W+++
Sbjct: 62  KFVTPDHADCRWAVTKQEEGIVLKVECTQRDNTFSCFFTGNPTSCLELHKNNAYWKQI 119


>sp|Q5JPB2|ZN831_HUMAN Zinc finger protein 831 OS=Homo sapiens
            GN=ZNF831 PE=2 SV=4
          Length = 1677

 Score = 30.4 bits (67), Expect = 8.4
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
 Frame = -2

Query: 337  SRYKSLKWISIRA--PTCMADMSRSHKSMPSRSEV--LKADSTSICSFSGHPACCGKERK 170
            SR ++  W+  R+  P  +  +        + SE+  L       C+ S  P CCGKE K
Sbjct: 1307 SRLRTPTWVRRRSRHPPALEGLKPCRTPGQTSSEIAGLNLQEEPSCATSESPPCCGKEEK 1366

Query: 169  QQPLWREVVHT 137
            ++   R+ + T
Sbjct: 1367 KEGDCRQTLGT 1377
tr_hit_id A7P4E2
Definition tr|A7P4E2|A7P4E2_VITVI Chromosome chr4 scaffold_6, whole genome shotgun sequence OS=Vitis vinifera
Align length 79
Score (bit) 37.4
E-value 0.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952362|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0013_O04, 5'
         (650 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7P4E2|A7P4E2_VITVI Chromosome chr4 scaffold_6, whole genome ...    37   0.80 
tr|A7P4E1|A7P4E1_VITVI Chromosome chr4 scaffold_6, whole genome ...    37   0.80 
tr|B8P110|B8P110_9APHY Predicted protein OS=Postia placenta Mad-...    34   6.7  

>tr|A7P4E2|A7P4E2_VITVI Chromosome chr4 scaffold_6, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00032118001
           PE=4 SV=1
          Length = 261

 Score = 37.4 bits (85), Expect = 0.80
 Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = -3

Query: 387 SRKALKMTDREKERKSNLAINL*SG*VSERPLVWQI*AGAIKA-CHQEARCSKQIAHQSV 211
           SRK +K    +K+R S++  ++    V + P   QI  GA K  CH    CS  I H+ V
Sbjct: 18  SRKPIKWLHGKKQRTSSMTSSV-HNFVLDWPTRLQIAIGAAKGLCHMHENCSAPIIHRDV 76

Query: 210 PSPGILLVVEKKESNSRYG 154
            S  ILL  E     + +G
Sbjct: 77  KSSNILLDAEFNAKIADFG 95


>tr|A7P4E1|A7P4E1_VITVI Chromosome chr4 scaffold_6, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00032117001
           PE=4 SV=1
          Length = 155

 Score = 37.4 bits (85), Expect = 0.80
 Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = -3

Query: 387 SRKALKMTDREKERKSNLAINL*SG*VSERPLVWQI*AGAIKA-CHQEARCSKQIAHQSV 211
           SRK +K    +K+R S++  ++    V + P   QI  GA K  CH    CS  I H+ V
Sbjct: 18  SRKPIKWLHGKKQRTSSMTSSV-HNFVLDWPTRLQIAIGAAKGLCHMHENCSAPIIHRDV 76

Query: 210 PSPGILLVVEKKESNSRYG 154
            S  ILL  E     + +G
Sbjct: 77  KSSNILLDAEFNAKIADFG 95


>tr|B8P110|B8P110_9APHY Predicted protein OS=Postia placenta
           Mad-698-R GN=POSPLDRAFT_105037 PE=4 SV=1
          Length = 230

 Score = 34.3 bits (77), Expect = 6.7
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = -3

Query: 573 AMWSAQKALLPTVFQWKIAIQQNVQETERISWTGSQPRCGEKPANCHILFQ 421
           A+     AL+ + F W++ I     ET  ISWTGS  R G     C +L +
Sbjct: 91  ALGGIASALVQSFFAWRVYIISGRLETSVISWTGSLVRVGITMTICMLLLK 141