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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK952391
Clone id TST38A01NGRL0013_P09
Library
Length 385
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0013_P09. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GTGGAGGGAGGAGCTTGCACGTGAAATCGAAGAGCGCGTGGGAGAGCTGCGAGAATCAAA
GGAAGCCAAGGAGCTGGTCTGAGCTGTGAAAACCCAAAGAGTGTTCGTGTAATGTAAATG
CTACCTTTCCATCACGTGGTGTTGTGGTCTGACTTATGCTCTGTACTCATAGCTTAGGTT
ACAAGTTACAACTGCTTTCCCTTTCCCTATTATGTATCTTAGTTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTTTAAGACATTTGTAAAGATAGCAAACTCCTTAAGTCGTCC
TATTAACAAATTGGAGATGGAGATGCGAGTCATCAACGCAATATAATGTCCTTGTTGGCC
AAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P38666
Definition sp|P38666|RL242_ARATH 60S ribosomal protein L24-2 OS=Arabidopsis thaliana
Align length 33
Score (bit) 29.6
E-value 4.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952391|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0013_P09, 5'
         (360 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P38666|RL242_ARATH 60S ribosomal protein L24-2 OS=Arabidopsis...    30   4.9  

>sp|P38666|RL242_ARATH 60S ribosomal protein L24-2 OS=Arabidopsis
           thaliana GN=RPL24B PE=2 SV=2
          Length = 163

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/33 (42%), Positives = 23/33 (69%)
 Frame = +2

Query: 5   REELAREIEERVGELRESKEAKELV*AVKTQRV 103
           RE   REI+ER+ + ++ K+AK++  A K Q+V
Sbjct: 108 REAALREIKERIKKTKDEKKAKKVEFASKQQKV 140
tr_hit_id Q9M9U4
Definition tr|Q9M9U4|Q9M9U4_ARATH F6A14.16 protein OS=Arabidopsis thaliana
Align length 22
Score (bit) 34.3
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952391|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0013_P09, 5'
         (360 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9M9U4|Q9M9U4_ARATH F6A14.16 protein OS=Arabidopsis thaliana ...    34   3.2  
tr|Q8RXS1|Q8RXS1_ARATH Putative uncharacterized protein At1g1873...    34   3.2  
tr|B7FML9|B7FML9_MEDTR Putative uncharacterized protein OS=Medic...    34   3.2  
tr|A9PFW0|A9PFW0_POPTR Putative uncharacterized protein OS=Popul...    34   3.2  
tr|A7PDK3|A7PDK3_VITVI Chromosome chr17 scaffold_12, whole genom...    34   3.2  
tr|A5BR34|A5BR34_VITVI Putative uncharacterized protein OS=Vitis...    34   3.2  

>tr|Q9M9U4|Q9M9U4_ARATH F6A14.16 protein OS=Arabidopsis thaliana
           GN=F6A14.16 PE=4 SV=1
          Length = 108

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 15/22 (68%), Positives = 18/22 (81%)
 Frame = +2

Query: 2   WREELAREIEERVGELRESKEA 67
           WREEL  EIE++VG LRE +EA
Sbjct: 84  WREELIEEIEQKVGGLRELEEA 105


>tr|Q8RXS1|Q8RXS1_ARATH Putative uncharacterized protein At1g18730
           OS=Arabidopsis thaliana GN=At1g18730 PE=2 SV=1
          Length = 175

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 15/22 (68%), Positives = 18/22 (81%)
 Frame = +2

Query: 2   WREELAREIEERVGELRESKEA 67
           WREEL  EIE++VG LRE +EA
Sbjct: 151 WREELIEEIEQKVGGLRELEEA 172


>tr|B7FML9|B7FML9_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 182

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 15/22 (68%), Positives = 18/22 (81%)
 Frame = +2

Query: 2   WREELAREIEERVGELRESKEA 67
           WREEL  EIE++VG LRE +EA
Sbjct: 152 WREELIEEIEQKVGGLREIEEA 173


>tr|A9PFW0|A9PFW0_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 180

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 15/22 (68%), Positives = 18/22 (81%)
 Frame = +2

Query: 2   WREELAREIEERVGELRESKEA 67
           WREEL  EIE++VG LRE +EA
Sbjct: 156 WREELIEEIEQKVGGLRELEEA 177


>tr|A7PDK3|A7PDK3_VITVI Chromosome chr17 scaffold_12, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00016315001
           PE=4 SV=1
          Length = 181

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 15/22 (68%), Positives = 18/22 (81%)
 Frame = +2

Query: 2   WREELAREIEERVGELRESKEA 67
           WREEL  EIE++VG LRE +EA
Sbjct: 157 WREELIEEIEQKVGGLRELEEA 178


>tr|A5BR34|A5BR34_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_038217 PE=4 SV=1
          Length = 209

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 15/22 (68%), Positives = 18/22 (81%)
 Frame = +2

Query: 2   WREELAREIEERVGELRESKEA 67
           WREEL  EIE++VG LRE +EA
Sbjct: 185 WREELIEEIEQKVGGLRELEEA 206