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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK952420
Clone id TST38A01NGRL0014_A18
Library
Length 656
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0014_A18. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
TGCGGATTCAGCGCGCAGGGTGATATGGCGGCTCTTGGACGTCTTGAATATCAGTGCGGA
TGCCGACACAGCGCCCTCTTCTGCCGTCACGAACTGCTGCAACTCTCCTCATGCTTCATG
CGTGACCATCCTCAGCAGCGCAGATTCCATAGCTTGGTTCCTGTAGCATTTTTATCCTCC
CCCTCATTTTCCCAGTCCATTGCCATCGACCCACGTTTGCAATCTCTAGGTTCAAGAGTG
AAGACTAGCCTGGAGCTCACCTCACCGAGCTTGACATCTTGTATGACATCAGAAAGCTTG
ATGTGTTGTGCTGCAGGAGGCAAAAGACCCAGAAGACCTCCCATGTGGAAATCTCGGCAC
AGAAGAGGTTCATTCAACAAGGCAGACCAACTTCTGGAATCTCTTGATTCAGTGCCTAAT
GTCAAAGAGGAAGTTTATGGAGCGCTTGACACGTTTGTTGCTTGGGAGTTGGATTTTCCA
TTGATTACTGTGAAGAAGGCCTTAACTACCCTTGAGAGGGAAAAAAATTGGTCTCGGATT
ATACAGATTATCAAGTGGATGCTTGGAAAAGGCCAAGGAAGGTCTTTGGGTACTTATTAC
CTCTTGCTTAAAGCGTTCAGCGAGGAGGGGAGGACCGAAGAAGGACGTGATATCTT
■■Homology search results ■■ -
sp_hit_id Q8LG95
Definition sp|Q8LG95|PP332_ARATH Pentatricopeptide repeat-containing protein At4g21190 OS=Arabidopsis thaliana
Align length 120
Score (bit) 147.0
E-value 4.0e-35
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952420|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0014_A18, 5'
         (656 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8LG95|PP332_ARATH Pentatricopeptide repeat-containing protei...   147   4e-35
sp|Q2V3H0|PP322_ARATH Pentatricopeptide repeat-containing protei...   107   7e-23
sp|Q6C882|STU1_YARLI Protein STU1 OS=Yarrowia lipolytica GN=STU1...    32   3.8  
sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protei...    32   3.8  
sp|Q9FLD8|PP408_ARATH Pentatricopeptide repeat-containing protei...    30   8.5  

>sp|Q8LG95|PP332_ARATH Pentatricopeptide repeat-containing protein
           At4g21190 OS=Arabidopsis thaliana GN=EMB1417 PE=2 SV=1
          Length = 307

 Score =  147 bits (372), Expect = 4e-35
 Identities = 65/120 (54%), Positives = 91/120 (75%)
 Frame = +1

Query: 295 SLMCCAAGGKRPRRPPMWKSRHRRGSFNKADQLLESLDSVPNVKEEVYGALDTFVAWELD 474
           +++ CAA G RPR P +WK+R R G+ +KA +++  +  + NVKEEVYGALD+F+AWEL+
Sbjct: 29  NVVVCAARGPRPRSPRVWKTRKRIGTISKAAKMIACIKGLSNVKEEVYGALDSFIAWELE 88

Query: 475 FPLITVKKALTTLEREKNWSRIIQIIKWMLGKGQGRSLGTYYLLLKAFSEEGRTEEGRDI 654
           FPL+ VKKAL  LE EK W +IIQ+ KWML KGQGR++GTY+ LL A +E+ R +E  ++
Sbjct: 89  FPLVIVKKALVILEDEKEWKKIIQVTKWMLSKGQGRTMGTYFSLLNALAEDNRLDEAEEL 148


>sp|Q2V3H0|PP322_ARATH Pentatricopeptide repeat-containing protein
           At4g18975, chloroplastic OS=Arabidopsis thaliana
           GN=At4g18975 PE=2 SV=2
          Length = 287

 Score =  107 bits (266), Expect = 7e-23
 Identities = 49/104 (47%), Positives = 66/104 (63%)
 Frame = +1

Query: 343 MWKSRHRRGSFNKADQLLESLDSVPNVKEEVYGALDTFVAWELDFPLITVKKALTTLERE 522
           +WK     GS  KA  L+  L  +PN KE VYGAL+ +VAWE++FP+I   KAL  L + 
Sbjct: 85  LWKKNDSAGSGQKALNLVRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKR 144

Query: 523 KNWSRIIQIIKWMLGKGQGRSLGTYYLLLKAFSEEGRTEEGRDI 654
             W R+IQ+ KWML KGQG ++GTY +LL AF  + R +E   +
Sbjct: 145 SQWHRVIQLAKWMLSKGQGATMGTYDILLLAFDMDERADEAESL 188


>sp|Q6C882|STU1_YARLI Protein STU1 OS=Yarrowia lipolytica GN=STU1
           PE=3 SV=2
          Length = 1597

 Score = 31.6 bits (70), Expect = 3.8
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
 Frame = +1

Query: 334 RPPMWKSRHRRGSFNKADQLLESLDSVPNVKEEVYGALDTFVAWELDFPLITVKKALTTL 513
           +P    +    G+ N     L  L+S+PN + +     + + A +L+  +  +  A    
Sbjct: 246 KPAQQPNSQEPGNENAPSSSLAFLNSLPNFRVDSLAPENVYSASDLESKINNMHVAFADK 305

Query: 514 EREKNWS----RIIQIIKWMLG 567
           E EKNWS     + QI K + G
Sbjct: 306 ESEKNWSLREKHVTQIRKLLRG 327


>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein
           At1g05665, mitochondrial OS=Arabidopsis thaliana
           GN=At1g05665 PE=2 SV=1
          Length = 741

 Score = 31.6 bits (70), Expect = 3.8
 Identities = 25/104 (24%), Positives = 46/104 (44%)
 Frame = +1

Query: 343 MWKSRHRRGSFNKADQLLESLDSVPNVKEEVYGALDTFVAWELDFPLITVKKALTTLERE 522
           MWK   +   F   + ++  L    N++E V   +  F A  L+   +T    +    + 
Sbjct: 482 MWKIGLQPNIFTY-NSIVNGLCKSGNIEEAVK-LVGEFEAAGLNADTVTYTTLMDAYCKS 539

Query: 523 KNWSRIIQIIKWMLGKGQGRSLGTYYLLLKAFSEEGRTEEGRDI 654
               +  +I+K MLGKG   ++ T+ +L+  F   G  E+G  +
Sbjct: 540 GEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKL 583


>sp|Q9FLD8|PP408_ARATH Pentatricopeptide repeat-containing protein
           At5g39980, chloroplastic OS=Arabidopsis thaliana
           GN=At5g39980 PE=2 SV=1
          Length = 678

 Score = 30.4 bits (67), Expect = 8.5
 Identities = 16/59 (27%), Positives = 32/59 (54%)
 Frame = +1

Query: 385 DQLLESLDSVPNVKEEVYGALDTFVAWELDFPLITVKKALTTLEREKNWSRIIQIIKWM 561
           D+LL S+    N KE ++  L T+   +L     +++  ++ L RE +W R + ++ W+
Sbjct: 93  DELLASIHQTQNEKE-LFSLLSTYKDRQL-----SIRFMVSLLSRENDWQRSLALLDWV 145
tr_hit_id Q0JJ68
Definition tr|Q0JJ68|Q0JJ68_ORYSJ cDNA clone:J033106B06, full insert sequence OS=Oryza sativa subsp. japonica
Align length 120
Score (bit) 155.0
E-value 3.0e-36
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952420|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0014_A18, 5'
         (656 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q0JJ68|Q0JJ68_ORYSJ cDNA clone:J033106B06, full insert sequen...   155   3e-36
tr|B8A9S3|B8A9S3_ORYSI Putative uncharacterized protein OS=Oryza...   155   3e-36
tr|A7QG98|A7QG98_VITVI Chromosome undetermined scaffold_91, whol...   154   6e-36
tr|B6TMK4|B6TMK4_MAIZE EMB1417 OS=Zea mays PE=2 SV=1                  152   2e-35
tr|B4FN67|B4FN67_MAIZE Putative uncharacterized protein OS=Zea m...   150   7e-35
tr|A2ZXZ7|A2ZXZ7_ORYSJ Putative uncharacterized protein OS=Oryza...   147   4e-34
tr|A9TQ80|A9TQ80_PHYPA Predicted protein (Fragment) OS=Physcomit...   135   2e-30
tr|A7QV72|A7QV72_VITVI Chromosome undetermined scaffold_186, who...   105   2e-21
tr|A7Q9Q5|A7Q9Q5_VITVI Chromosome chr5 scaffold_67, whole genome...    97   7e-19
tr|B6SKC7|B6SKC7_MAIZE EMB2748 OS=Zea mays PE=2 SV=1                   94   6e-18
tr|B4FZN3|B4FZN3_MAIZE Putative uncharacterized protein OS=Zea m...    94   6e-18
tr|Q9C5I2|Q9C5I2_ARATH Putative uncharacterized protein At1g0459...    91   8e-17
tr|Q3EDI7|Q3EDI7_ARATH Uncharacterized protein At1g04590.2 OS=Ar...    91   8e-17
tr|Q6ZFC1|Q6ZFC1_ORYSJ Os07g0545900 protein OS=Oryza sativa subs...    90   1e-16
tr|A2YMD0|A2YMD0_ORYSI Putative uncharacterized protein OS=Oryza...    90   1e-16
tr|A2ZAY8|A2ZAY8_ORYSI Putative uncharacterized protein OS=Oryza...    89   3e-16
tr|O23026|O23026_ARATH T1G11.16 protein OS=Arabidopsis thaliana ...    88   5e-16
tr|B6TB15|B6TB15_MAIZE EMB1417 OS=Zea mays PE=2 SV=1                   87   7e-16
tr|Q2RB50|Q2RB50_ORYSJ Os11g0125500 protein OS=Oryza sativa subs...    86   2e-15
tr|Q2QYE5|Q2QYE5_ORYSJ Os12g0123100 protein OS=Oryza sativa subs...    86   3e-15
tr|B8BNX8|B8BNX8_ORYSI Putative uncharacterized protein OS=Oryza...    86   3e-15
tr|A3CEH4|A3CEH4_ORYSJ Putative uncharacterized protein OS=Oryza...    86   3e-15
tr|B4FPI6|B4FPI6_MAIZE Putative uncharacterized protein OS=Zea m...    80   1e-13
tr|Q01BI0|Q01BI0_OSTTA FOG: PPR repeat (ISS) OS=Ostreococcus tau...    34   9.0  
tr|A7PRF0|A7PRF0_VITVI Chromosome chr14 scaffold_27, whole genom...    34   9.0  
tr|A5C4I9|A5C4I9_VITVI Putative uncharacterized protein OS=Vitis...    34   9.0  

>tr|Q0JJ68|Q0JJ68_ORYSJ cDNA clone:J033106B06, full insert sequence
           OS=Oryza sativa subsp. japonica GN=Os01g0757700 PE=2
           SV=1
          Length = 213

 Score =  155 bits (391), Expect = 3e-36
 Identities = 71/120 (59%), Positives = 92/120 (76%)
 Frame = +1

Query: 295 SLMCCAAGGKRPRRPPMWKSRHRRGSFNKADQLLESLDSVPNVKEEVYGALDTFVAWELD 474
           +L+ C A G RPR P +WK+R R G+ +K+ +L+E +  + NVKEEVYGALD+FVAWEL+
Sbjct: 28  TLVVCGARGPRPRYPRVWKTRKRIGTVSKSQKLVECVKGLSNVKEEVYGALDSFVAWELE 87

Query: 475 FPLITVKKALTTLEREKNWSRIIQIIKWMLGKGQGRSLGTYYLLLKAFSEEGRTEEGRDI 654
           FPLI VKKAL TLE EK W RIIQ+IKWM  KGQG+++G+YY LL A  E+GR EE  ++
Sbjct: 88  FPLIAVKKALKTLEDEKEWKRIIQVIKWMFNKGQGKTMGSYYTLLNALIEDGRVEEAEEL 147


>tr|B8A9S3|B8A9S3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_03797 PE=4 SV=1
          Length = 295

 Score =  155 bits (391), Expect = 3e-36
 Identities = 71/120 (59%), Positives = 92/120 (76%)
 Frame = +1

Query: 295 SLMCCAAGGKRPRRPPMWKSRHRRGSFNKADQLLESLDSVPNVKEEVYGALDTFVAWELD 474
           +L+ C A G RPR P +WK+R R G+ +K+ +L+E +  + NVKEEVYGALD+FVAWEL+
Sbjct: 28  TLVVCGARGPRPRYPRVWKTRKRIGTVSKSQKLVECVKGLSNVKEEVYGALDSFVAWELE 87

Query: 475 FPLITVKKALTTLEREKNWSRIIQIIKWMLGKGQGRSLGTYYLLLKAFSEEGRTEEGRDI 654
           FPLI VKKAL TLE EK W RIIQ+IKWM  KGQG+++G+YY LL A  E+GR EE  ++
Sbjct: 88  FPLIAVKKALKTLEDEKEWKRIIQVIKWMFNKGQGKTMGSYYTLLNALIEDGRVEEAEEL 147


>tr|A7QG98|A7QG98_VITVI Chromosome undetermined scaffold_91, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00037757001 PE=4 SV=1
          Length = 295

 Score =  154 bits (388), Expect = 6e-36
 Identities = 68/120 (56%), Positives = 94/120 (78%)
 Frame = +1

Query: 295 SLMCCAAGGKRPRRPPMWKSRHRRGSFNKADQLLESLDSVPNVKEEVYGALDTFVAWELD 474
           S++ C A G RPR P +WK+R R G+ +K+ +L++ +  + NVKEEVYGALD+F+AWEL+
Sbjct: 26  SIVVCGAKGPRPRYPRVWKTRQRIGTISKSAKLVDCIKGLSNVKEEVYGALDSFIAWELE 85

Query: 475 FPLITVKKALTTLEREKNWSRIIQIIKWMLGKGQGRSLGTYYLLLKAFSEEGRTEEGRDI 654
           FPLITVKKAL TLE +K W RIIQ+ KWML KGQGR++G+Y+ LL A +E+GR +E  ++
Sbjct: 86  FPLITVKKALKTLEDQKEWKRIIQVTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEEL 145


>tr|B6TMK4|B6TMK4_MAIZE EMB1417 OS=Zea mays PE=2 SV=1
          Length = 296

 Score =  152 bits (384), Expect = 2e-35
 Identities = 69/120 (57%), Positives = 91/120 (75%)
 Frame = +1

Query: 295 SLMCCAAGGKRPRRPPMWKSRHRRGSFNKADQLLESLDSVPNVKEEVYGALDTFVAWELD 474
           S++ C A G RPR P +WK+R + G+ +K+ +L+E +  + NVKEEVYGALD+FVAWEL+
Sbjct: 28  SIVVCGARGPRPRYPRVWKTRKKIGTISKSQKLVECIKGLSNVKEEVYGALDSFVAWELE 87

Query: 475 FPLITVKKALTTLEREKNWSRIIQIIKWMLGKGQGRSLGTYYLLLKAFSEEGRTEEGRDI 654
           FPLI VKKAL  LE EK W RIIQ+IKWM  KGQG+++G+YY LL A  E+GR EE  ++
Sbjct: 88  FPLIVVKKALKKLEDEKEWKRIIQVIKWMFNKGQGKTMGSYYTLLNALIEDGRIEEAEEL 147


>tr|B4FN67|B4FN67_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 296

 Score =  150 bits (379), Expect = 7e-35
 Identities = 68/119 (57%), Positives = 90/119 (75%)
 Frame = +1

Query: 298 LMCCAAGGKRPRRPPMWKSRHRRGSFNKADQLLESLDSVPNVKEEVYGALDTFVAWELDF 477
           ++ C A G RPR P +WK+R + G+ +K+ +L+E +  + NVKEEVYGALD+FVAWEL+F
Sbjct: 29  VVVCGARGPRPRYPRVWKTRKKIGTISKSQKLVECIKGLSNVKEEVYGALDSFVAWELEF 88

Query: 478 PLITVKKALTTLEREKNWSRIIQIIKWMLGKGQGRSLGTYYLLLKAFSEEGRTEEGRDI 654
           PLI VKKAL  LE EK W RIIQ+IKWM  KGQG+++G+YY LL A  E+GR EE  ++
Sbjct: 89  PLIVVKKALKKLEDEKEWKRIIQVIKWMFNKGQGKTMGSYYTLLNALIEDGRIEEAEEL 147


>tr|A2ZXZ7|A2ZXZ7_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_003419 PE=4 SV=1
          Length = 308

 Score =  147 bits (372), Expect = 4e-34
 Identities = 73/133 (54%), Positives = 92/133 (69%), Gaps = 13/133 (9%)
 Frame = +1

Query: 295 SLMCCAAGGKRPRRPPMWKSRHRRGSFNKADQLLESLDSVP-------------NVKEEV 435
           +L+ C A G RPR P +WK+R R G+ +K+ +L+E L  V              NVKEEV
Sbjct: 28  TLVVCGARGPRPRYPRVWKTRKRIGTVSKSQKLVECLQFVSAFASNIFLVKGLSNVKEEV 87

Query: 436 YGALDTFVAWELDFPLITVKKALTTLEREKNWSRIIQIIKWMLGKGQGRSLGTYYLLLKA 615
           YGALD+FVAWEL+FPLI VKKAL TLE EK W RIIQ+IKWM  KGQG+++G+YY LL A
Sbjct: 88  YGALDSFVAWELEFPLIAVKKALKTLEDEKEWKRIIQVIKWMFNKGQGKTMGSYYTLLNA 147

Query: 616 FSEEGRTEEGRDI 654
             E+GR EE  ++
Sbjct: 148 LIEDGRVEEAEEL 160


>tr|A9TQ80|A9TQ80_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_47216 PE=4 SV=1
          Length = 204

 Score =  135 bits (340), Expect = 2e-30
 Identities = 59/107 (55%), Positives = 81/107 (75%)
 Frame = +1

Query: 322 KRPRRPPMWKSRHRRGSFNKADQLLESLDSVPNVKEEVYGALDTFVAWELDFPLITVKKA 501
           KRPRR   WK+ +R+GSF KA +L++ +D  P  KE++YGALD FVAWEL+FP+I +KKA
Sbjct: 1   KRPRRKRAWKTTNRKGSFAKARKLVDLIDETPPAKEDIYGALDAFVAWELEFPIIAIKKA 60

Query: 502 LTTLEREKNWSRIIQIIKWMLGKGQGRSLGTYYLLLKAFSEEGRTEE 642
           +  +  E+ W +IIQ+ KWML KGQG+++GT+ LLL+A   EGR EE
Sbjct: 61  MAFMAEEQKWRQIIQVSKWMLSKGQGKTMGTFTLLLEALDHEGRVEE 107


>tr|A7QV72|A7QV72_VITVI Chromosome undetermined scaffold_186, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00007220001 PE=4 SV=1
          Length = 226

 Score =  105 bits (262), Expect = 2e-21
 Identities = 49/104 (47%), Positives = 64/104 (61%)
 Frame = +1

Query: 343 MWKSRHRRGSFNKADQLLESLDSVPNVKEEVYGALDTFVAWELDFPLITVKKALTTLERE 522
           +W+ R   GS  KA  L+  +  +PN KE VYGALD + AWE +FPLI   KAL  L + 
Sbjct: 23  LWRKRDSIGSGQKALNLVRIVSELPNEKEAVYGALDKWTAWETEFPLIAAAKALRILRKR 82

Query: 523 KNWSRIIQIIKWMLGKGQGRSLGTYYLLLKAFSEEGRTEEGRDI 654
             W R+IQ+ KWML KGQG ++GTY  LL AF  + R +E   +
Sbjct: 83  NQWKRVIQVAKWMLSKGQGATMGTYDTLLLAFDMDWRVDEAESL 126


>tr|A7Q9Q5|A7Q9Q5_VITVI Chromosome chr5 scaffold_67, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00033577001
           PE=4 SV=1
          Length = 279

 Score = 97.4 bits (241), Expect = 7e-19
 Identities = 43/92 (46%), Positives = 66/92 (71%)
 Frame = +1

Query: 376 NKADQLLESLDSVPNVKEEVYGALDTFVAWELDFPLITVKKALTTLEREKNWSRIIQIIK 555
           +K + L+ +L  + + KE VYGALD +VAWE +FP+ ++K+ L TLE+E+ W R+IQ++K
Sbjct: 82  DKINFLVTTLLDLKDSKEAVYGALDAWVAWEQNFPIASLKRVLITLEKEQQWHRVIQVVK 141

Query: 556 WMLGKGQGRSLGTYYLLLKAFSEEGRTEEGRD 651
           WML KGQG ++GTY  L++A   + R EE  +
Sbjct: 142 WMLSKGQGTTMGTYGQLIRALDMDHRAEEAHE 173


>tr|B6SKC7|B6SKC7_MAIZE EMB2748 OS=Zea mays PE=2 SV=1
          Length = 322

 Score = 94.4 bits (233), Expect = 6e-18
 Identities = 46/95 (48%), Positives = 65/95 (68%)
 Frame = +1

Query: 370 SFNKADQLLESLDSVPNVKEEVYGALDTFVAWELDFPLITVKKALTTLEREKNWSRIIQI 549
           S  K   L+ +L S+ + +E VYG LD +VA+E DFPL ++K+AL+ LE+E+ W RI+Q+
Sbjct: 95  SAEKRKFLVNTLLSLEDSREAVYGTLDAWVAFEQDFPLASLKQALSVLEKEEQWHRIVQV 154

Query: 550 IKWMLGKGQGRSLGTYYLLLKAFSEEGRTEEGRDI 654
           IKWML KGQG ++ TY LL  A  ++ R EE   I
Sbjct: 155 IKWMLSKGQGNTMRTYELLACALEKDNRAEEAHRI 189