| DK952423 |
| Clone id |
TST38A01NGRL0014_A21 |
| Library |
TST38 |
| Length |
627 |
| Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0014_A21. 5' end sequence. |
| Accession |
DK952423 |
| Tissue type |
prothallia |
| Developmental stage |
gametophyte |
| Contig ID |
CL4059Contig1 |
| Sequence |
TGCTTCTGTGCGTGCTCTCCAAAGAGTTGAGAGTGAATCACTTGCTCTCCGCAGGCAGAG AGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGCTGCTTGACTACCTGTCACAGAGCTGCCA AGAGGAGGCAACAAGGCCATGTATGTCCGGGTGAAGCGAAAAAAGACTACCTACTTTGTG CATTGTGAGCCATCTGATACCACGTTGCAAGTCAAGAACAAGCTACAAGCTCTCACTGAC TCCCCCACCAAGAACCAACGCCTAATTCTTATGGACTCCCACCATGTCCTTGATGATGGT CGGACTCTCGCCCAACAACACGTGGAAAACAACTCCATAATAGCCTTAACCTTGAAAAAA AGCAGTGGAGAATGGGAGGACATAGACATCGACAAGTTCAACAATCACAATGTGTATGAT TCAGAAAGTAGTAGTTGAGCCATATGTTGAGCTCCTTCCCTAGTTGAATCGTACCATAAT GGCTTCCTGTGACTCAATTAAGTAATAAGCTCTTAATCCTTGACCACCACATAATTCTTT AGCAAGTCCATGATGCATAATCTAGTGTATCAACTATATGGTCCTCACGTGATGTAACTT CATAATCTACAATCAATGATAATTTGT |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
P49635 |
| Definition |
sp|P49635|UBIQ_LEITA Ubiquitin OS=Leishmania tarentolae |
| Align length |
68 |
| Score (bit) |
45.4 |
| E-value |
0.0002 |
| Report |
 |
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
A9T676 |
| Definition |
tr|A9T676|A9T676_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
| Align length |
99 |
| Score (bit) |
116.0 |
| E-value |
1.0e-24 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK952423|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0014_A21, 5' (627 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9T676|A9T676_PHYPA Predicted protein OS=Physcomitrella paten... 116 1e-24 tr|Q8L8S0|Q8L8S0_ARATH Ubiquitin-like protein (Putative uncharac... 107 4e-22 tr|Q9FJM8|Q9FJM8_ARATH Genomic DNA, chromosome 5, P1 clone: MTI2... 106 1e-21 tr|Q8VWY0|Q8VWY0_CUCSA Ubiquitin-like protein OS=Cucumis sativus... 105 2e-21 tr|A9PCX0|A9PCX0_POPTR Putative uncharacterized protein OS=Popul... 104 5e-21 tr|A7PH88|A7PH88_VITVI Chromosome chr17 scaffold_16, whole genom... 104 5e-21 tr|Q0DRQ4|Q0DRQ4_ORYSJ Os03g0364000 protein (Fragment) OS=Oryza ... 100 5e-20 tr|B6UB58|B6UB58_MAIZE Ubiquitin-like protein OS=Zea mays PE=4 SV=1 99 2e-19 tr|B7FMQ0|B7FMQ0_MEDTR Putative uncharacterized protein OS=Medic... 99 2e-19 tr|Q10KZ8|Q10KZ8_ORYSJ cDNA clone:001-104-D11, full insert seque... 98 5e-19 tr|B8AQ55|B8AQ55_ORYSI Putative uncharacterized protein OS=Oryza... 98 5e-19 tr|A3AI82|A3AI82_ORYSJ Putative uncharacterized protein OS=Oryza... 95 4e-18 tr|A5B5T1|A5B5T1_VITVI Putative uncharacterized protein OS=Vitis... 94 7e-18 tr|A8IYP3|A8IYP3_CHLRE Predicted protein OS=Chlamydomonas reinha... 84 7e-15 tr|B3H5I5|B3H5I5_ARATH Uncharacterized protein At5g57860.4 OS=Ar... 81 6e-14 tr|Q86K69|Q86K69_DICDI Putative uncharacterized protein OS=Dicty... 50 9e-05 tr|B7G847|B7G847_PHATR Predicted protein OS=Phaeodactylum tricor... 50 1e-04 tr|A0CAI2|A0CAI2_PARTE Chromosome undetermined scaffold_161, who... 49 2e-04 tr|B8C452|B8C452_THAPS Predicted protein OS=Thalassiosira pseudo... 49 3e-04 tr|Q86R82|Q86R82_9EUKA Polyubiquitin (Fragment) OS=Haynesina ger... 46 0.002 tr|Q9FHQ6|Q9FHQ6_ARATH Polyubiquitin OS=Arabidopsis thaliana GN=... 46 0.002 tr|A5B3U2|A5B3U2_VITVI Putative uncharacterized protein OS=Vitis... 46 0.002 tr|A0BLF1|A0BLF1_PARTE Chromosome undetermined scaffold_114, who... 46 0.002 tr|Q4RGY9|Q4RGY9_TETNG Chromosome undetermined SCAF15083, whole ... 45 0.003 tr|B5G2P1|B5G2P1_TAEGU Putative ubiquitin C variant 1 OS=Taeniop... 45 0.003 tr|Q7RHL4|Q7RHL4_PLAYO Putative uncharacterized protein PY03971 ... 45 0.003 tr|A1TWA7|A1TWA7_ACIAC Ubiquitin OS=Acidovorax avenae subsp. cit... 45 0.004 tr|Q84YH2|Q84YH2_BIGNA Polyubiquitin OS=Bigelowiella natans PE=2... 45 0.004 tr|Q84JH0|Q84JH0_BIGNA Polyubiquitin OS=Bigelowiella natans PE=2... 45 0.004 tr|Q0C7C3|Q0C7C3_AEDAE Elongin b OS=Aedes aegypti GN=AAEL000084 ... 45 0.004
>tr|A9T676|A9T676_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_192019 PE=4 SV=1 Length = 102
Score = 116 bits (291), Expect = 1e-24 Identities = 55/99 (55%), Positives = 79/99 (79%), Gaps = 2/99 (2%) Frame = +1
Query: 136 AMYVRVKRKKTTYFVHCEPSDTTLQVKNKLQALTDSPTKNQRLILMDSHHVLDDGRTLAQ 315 AM++RVKRKKTTYF+HC+PS+T ++ K+KL AL+D P QRLIL+ SH VLDD +TLA Sbjct: 2 AMFIRVKRKKTTYFLHCDPSETVVETKHKLHALSDVPVDQQRLILLPSHTVLDDNKTLAD 61
Query: 316 QHVENNSIIALTLK-KSSGEWEDIDIDKFNNH-NVYDSE 426 Q VEN++++ALTLK +G+WE+++I+K +H N+ D + Sbjct: 62 QKVENDAVVALTLKIVETGDWEEVNIEKPADHANLIDPD 100
>tr|Q8L8S0|Q8L8S0_ARATH Ubiquitin-like protein (Putative uncharacterized protein At5g57860) (At5g57860) OS=Arabidopsis thaliana GN=At5g57860 PE=4 SV=1 Length = 95
Score = 107 bits (268), Expect = 4e-22 Identities = 48/85 (56%), Positives = 66/85 (77%) Frame = +1
Query: 136 AMYVRVKRKKTTYFVHCEPSDTTLQVKNKLQALTDSPTKNQRLILMDSHHVLDDGRTLAQ 315 AMY+RVKR KTTYF+ C+P++T L VK KL AL + P NQRL+LM + VL+D ++LA Sbjct: 2 AMYIRVKRMKTTYFIQCDPTETVLDVKQKLFALIEQPVNNQRLVLMSTEEVLEDSKSLAD 61
Query: 316 QHVENNSIIALTLKKSSGEWEDIDI 390 Q VEN++++ALTLKK E+ED++I Sbjct: 62 QKVENDAVVALTLKKDDNEFEDVNI 86
>tr|Q9FJM8|Q9FJM8_ARATH Genomic DNA, chromosome 5, P1 clone: MTI20 OS=Arabidopsis thaliana PE=4 SV=1 Length = 93
Score = 106 bits (264), Expect = 1e-21 Identities = 47/84 (55%), Positives = 65/84 (77%) Frame = +1
Query: 139 MYVRVKRKKTTYFVHCEPSDTTLQVKNKLQALTDSPTKNQRLILMDSHHVLDDGRTLAQQ 318 MY+RVKR KTTYF+ C+P++T L VK KL AL + P NQRL+LM + VL+D ++LA Q Sbjct: 1 MYIRVKRMKTTYFIQCDPTETVLDVKQKLFALIEQPVNNQRLVLMSTEEVLEDSKSLADQ 60
Query: 319 HVENNSIIALTLKKSSGEWEDIDI 390 VEN++++ALTLKK E+ED++I Sbjct: 61 KVENDAVVALTLKKDDNEFEDVNI 84
>tr|Q8VWY0|Q8VWY0_CUCSA Ubiquitin-like protein OS=Cucumis sativus GN=UBI-1 PE=4 SV=1 Length = 103
Score = 105 bits (263), Expect = 2e-21 Identities = 47/85 (55%), Positives = 67/85 (78%) Frame = +1
Query: 136 AMYVRVKRKKTTYFVHCEPSDTTLQVKNKLQALTDSPTKNQRLILMDSHHVLDDGRTLAQ 315 AMY+R+KR KTTYF+ C+P +TTL +K KL++L D P +QRLILM S VL+D +TLA Sbjct: 2 AMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLAD 61
Query: 316 QHVENNSIIALTLKKSSGEWEDIDI 390 Q VEN++++ALTL+K ++E+I+I Sbjct: 62 QKVENDAVVALTLRKDDNDFEEINI 86
>tr|A9PCX0|A9PCX0_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=4 SV=1 Length = 103
Score = 104 bits (259), Expect = 5e-21 Identities = 45/85 (52%), Positives = 66/85 (77%) Frame = +1
Query: 136 AMYVRVKRKKTTYFVHCEPSDTTLQVKNKLQALTDSPTKNQRLILMDSHHVLDDGRTLAQ 315 AMY+RVKR KTTYF+ C+P++ TL++K KL L D P +QRLIL+ + VL+D ++LA+ Sbjct: 2 AMYIRVKRNKTTYFIQCDPTEKTLEIKQKLNVLIDQPVNDQRLILVGTGEVLEDSKSLAE 61
Query: 316 QHVENNSIIALTLKKSSGEWEDIDI 390 Q VEN++++ALTL+K E+ED+ I Sbjct: 62 QKVENDAVVALTLRKDDNEFEDVSI 86
>tr|A7PH88|A7PH88_VITVI Chromosome chr17 scaffold_16, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00017850001 PE=4 SV=1 Length = 101
Score = 104 bits (259), Expect = 5e-21 Identities = 47/89 (52%), Positives = 67/89 (75%) Frame = +1
Query: 139 MYVRVKRKKTTYFVHCEPSDTTLQVKNKLQALTDSPTKNQRLILMDSHHVLDDGRTLAQQ 318 MY+RVKR KTTYF+ C+P++T L VK KL L D P +QRLIL+ + +LDD +TLA Q Sbjct: 1 MYIRVKRSKTTYFLQCDPTETILDVKQKLHTLIDQPINDQRLILVGTGEILDDSKTLADQ 60
Query: 319 HVENNSIIALTLKKSSGEWEDIDIDKFNN 405 VEN++++ALTL+K E+ED++I + N+ Sbjct: 61 KVENDAVVALTLRKDDNEFEDVNIVRPND 89
>tr|Q0DRQ4|Q0DRQ4_ORYSJ Os03g0364000 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os03g0364000 PE=4 SV=1 Length = 139
Score = 100 bits (250), Expect = 5e-20 Identities = 49/102 (48%), Positives = 71/102 (69%), Gaps = 1/102 (0%) Frame = +1
Query: 88 GAA*LPVTELPRGGNKAMYVRVKRKKTTYFVHCEPSDTTLQVKNKLQALTDSPTKNQRLI 267 G A + + P + AMY+RVKR KTTYF+ C+P++TTL +K KL +L D P NQ+LI Sbjct: 28 GGAGVLLLSPPHHRSPAMYIRVKRNKTTYFIQCDPTETTLSIKQKLHSLVDQPPGNQQLI 87
Query: 268 LM-DSHHVLDDGRTLAQQHVENNSIIALTLKKSSGEWEDIDI 390 L+ + VLDD +TLA Q VEN++++ALTL+K +E++ I Sbjct: 88 LLATTEVVLDDSKTLADQKVENDAVVALTLRKDDNVFEEVSI 129
>tr|B6UB58|B6UB58_MAIZE Ubiquitin-like protein OS=Zea mays PE=4 SV=1 Length = 94
Score = 99.4 bits (246), Expect = 2e-19 Identities = 44/84 (52%), Positives = 63/84 (75%) Frame = +1
Query: 139 MYVRVKRKKTTYFVHCEPSDTTLQVKNKLQALTDSPTKNQRLILMDSHHVLDDGRTLAQQ 318 MY+RVKR K+TYF+ CEP++T L +K KL +L D P +Q+L+L S VL+D +TLA Q Sbjct: 1 MYIRVKRNKSTYFIQCEPTETALSIKQKLHSLIDQPPSSQQLVLWPSSDVLEDSKTLADQ 60
Query: 319 HVENNSIIALTLKKSSGEWEDIDI 390 V+N+SI+AL L+K GE+E++ I Sbjct: 61 KVDNDSIVALALRKDDGEFEEVFI 84
>tr|B7FMQ0|B7FMQ0_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=4 SV=1 Length = 103
Score = 99.0 bits (245), Expect = 2e-19 Identities = 46/100 (46%), Positives = 71/100 (71%), Gaps = 1/100 (1%) Frame = +1
Query: 139 MYVRVKRKKTTYFVHCEPSDTTLQVKNKLQALTDSPTKNQRLILMDSHHVLDDGRTLAQQ 318 MY+R+KR KTTYF+ C+ SD L +K KLQ L D P K+QRLIL + VLDD +TLA Q Sbjct: 3 MYIRIKRDKTTYFIRCKASDKILDIKEKLQELVDKPAKDQRLILPGTGEVLDDSKTLADQ 62
Query: 319 HVENNSIIALTLKKSSGEWEDIDIDKFNN-HNVYDSESSS 435 ++ ++++ALTL+K E+E+++I + ++ + D+E +S Sbjct: 63 KIDTDAVVALTLRKDDNEFEEVNIVRPSDFYQTRDAEGAS 102
>tr|Q10KZ8|Q10KZ8_ORYSJ cDNA clone:001-104-D11, full insert sequence OS=Oryza sativa subsp. japonica GN=LOC_Os03g24920 PE=4 SV=1 Length = 95
Score = 97.8 bits (242), Expect = 5e-19 Identities = 45/85 (52%), Positives = 64/85 (75%), Gaps = 1/85 (1%) Frame = +1
Query: 139 MYVRVKRKKTTYFVHCEPSDTTLQVKNKLQALTDSPTKNQRLILM-DSHHVLDDGRTLAQ 315 MY+RVKR KTTYF+ C+P++TTL +K KL +L D P NQ+LIL+ + VLDD +TLA Sbjct: 1 MYIRVKRNKTTYFIQCDPTETTLSIKQKLHSLVDQPPGNQQLILLATTEVVLDDSKTLAD 60
Query: 316 QHVENNSIIALTLKKSSGEWEDIDI 390 Q VEN++++ALTL+K +E++ I Sbjct: 61 QKVENDAVVALTLRKDDNVFEEVSI 85
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