BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952430|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0014_B04, 5'
         (621 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9HFC8|PALB_YARLI Calpain-like protease palB/RIM13 OS=Yarrowi...    30   2.4  
sp|P31563|YCF1_OENBE Putative membrane protein ycf1 (Fragment) O...    31   5.9  

>sp|Q9HFC8|PALB_YARLI Calpain-like protease palB/RIM13 OS=Yarrowia
           lipolytica GN=RIM13 PE=3 SV=1
          Length = 795

 Score = 29.6 bits (65), Expect(2) = 2.4
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = +2

Query: 329 TNTMQCALRTKSQHLYRQSIKRNKKELTTSRKPT*PRQPTAYSQVTSAIW 478
           T  M C+  T S+ +YR S+        T  KPT    P AYSQ+    W
Sbjct: 516 TAVMACSGMTDSEPMYRFSLFLYANNPLTMSKPT---APLAYSQIFKGKW 562



 Score = 21.6 bits (44), Expect(2) = 2.4
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 265 FCLVYAFEQATP*IV*KSSH 324
           FC ++ FE AT  ++ ++SH
Sbjct: 471 FCCIHLFEGATRVVLQETSH 490


>sp|P31563|YCF1_OENBE Putative membrane protein ycf1 (Fragment)
           OS=Oenothera bertiana GN=ycf1 PE=3 SV=1
          Length = 1005

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 29/100 (29%), Positives = 39/100 (39%), Gaps = 2/100 (2%)
 Frame = +2

Query: 113 PPSPTRPAG--DT*SKKEKMIATLSTVPYCYACKGTGSHALSVWLC*ILSKFAFVWFMLL 286
           P  P RP     T +  EK +    +  + Y C+  G   L       L+ F   W M+ 
Sbjct: 522 PQKPLRPLRYIKTCAGVEKAVKNEMSQYFFYPCRSDGKQRLCFTYPPSLATF---WEMIQ 578

Query: 287 NRQHLRLYEKAATYTNTMQCALRTKSQHLYRQSIKRNKKE 406
            +   R       YT     ALR  +   YRQ I RNKK+
Sbjct: 579 RKMASRF---PRIYTKAKWRALRGSAPGSYRQWISRNKKK 615

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952430|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0014_B04, 5'
         (621 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2FAU8|Q2FAU8_9BETA RhUL11 OS=Macacine herpesvirus 3 PE=4 SV=1      37   0.94 
tr|Q7TFV8|Q7TFV8_RHCM6 Rh23 OS=Rhesus cytomegalovirus (strain 68...    35   4.7  

>tr|Q2FAU8|Q2FAU8_9BETA RhUL11 OS=Macacine herpesvirus 3 PE=4 SV=1
          Length = 231

 Score = 37.0 bits (84), Expect = 0.94
 Identities = 40/150 (26%), Positives = 62/150 (41%), Gaps = 6/150 (4%)
 Frame = +2

Query: 38  MRSNQKHNRKAPCATLKRT-GKHITLPPSPTRPAGDT*SKKEKMIATLSTVPYCYACKGT 214
           M S+   ++K  C  +  T G+++TL P P                  +T  Y Y   G 
Sbjct: 24  MYSDTLSSKKLTCIPVNSTAGRNVTLNPPPFNHH--------------TTYVYWYRQLGK 69

Query: 215 GSHALSVWLC*ILSKFAFVWFMLLNRQHLRLYEKAATY----TNTMQCALRTKSQHLYRQ 382
           G + L  ++     K A + F  L+   L L    A+Y    T  +   L T S   Y  
Sbjct: 70  GKNELCRYVPNKQEKNARIKFKCLSNYSLLLINVTASYNGNYTVNLDLGLGTTSTTCYTL 129

Query: 383 SIKRNKKEL-TTSRKPT*PRQPTAYSQVTS 469
           ++K   + + TT+RKPT  R+ T    +TS
Sbjct: 130 TVKTATQIVKTTTRKPTTTRKTTTTMSITS 159


>tr|Q7TFV8|Q7TFV8_RHCM6 Rh23 OS=Rhesus cytomegalovirus (strain 68-1)
           PE=4 SV=1
          Length = 231

 Score = 34.7 bits (78), Expect = 4.7
 Identities = 38/150 (25%), Positives = 61/150 (40%), Gaps = 6/150 (4%)
 Frame = +2

Query: 38  MRSNQKHNRKAPCATLKRT-GKHITLPPSPTRPAGDT*SKKEKMIATLSTVPYCYACKGT 214
           M S+   ++K  C  +  T G+++TL P P                  +T  Y Y   G 
Sbjct: 24  MYSDTLSSKKITCIPVNSTAGRNVTLNPPPFNHH--------------TTYVYWYRQLGK 69

Query: 215 GSHALSVWLC*ILSKFAFVWFMLLNRQHLRLYEKAATY----TNTMQCALRTKSQHLYRQ 382
           G + L  ++     + A + F  L+   L L     +Y    T  +   L T S   Y  
Sbjct: 70  GKNELCRYVPNKQERNARIKFQCLSNYSLLLINVTTSYNGNYTVNLDLGLGTTSTTCYTL 129

Query: 383 SIKRNKKEL-TTSRKPT*PRQPTAYSQVTS 469
           ++K   + + TT+RKPT  R+ T    +TS
Sbjct: 130 TVKTATQIVKTTTRKPTTTRKTTTTMSITS 159