DK952442 |
Clone id |
TST38A01NGRL0014_B16 |
Library |
TST38 |
Length |
669 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0014_B16. 5' end sequence. |
Accession |
DK952442 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL4200Contig1 |
Sequence |
ATCAAGGAAGCAAACTTTGGTGAGCTTGCGTCGTTCTTTCTCCTGTTTTCGACTCCGGAT TGTGGAATAGGACGTTCAAAAGGACTCTTTGTGGTCTCTACCATCAATTCTCTCGTTCTT GCCCTGCTTTTGGGTTCTTTGTTTTTGAAGCCTTTTGAAAGCAAAGTCACCTTGCGCGGA AGATACATAGCAGAGCAGATGTTAAGGATGCCATGGGACGTAAAATACTAACTATTGCAG GTCTTTAAGCGTCTGAACACCTACATACATTGTCATAGGGCACTCTTAGCCAGATTTTTT GCCATTGGGGGCTTCAACATGGATGGAGGCAATGCCTTAACAGGTGGGCCGGAAAGCAGA AAGAAGAAAGTTGCTTATTTCTACGACCCAGATGTTGGCAATTATTACTATGGGCAGGGG CATCCTATGAAACCCCATCGCATTCGCATGACACATTCACTCCTGGTGCAATATGGGCTT GATCGGAAGATGGAAATGCTGAAGCCTCTTCCTGCTCGTATTAGCGACCTCTGCCGTTTT CATGCGGATGATTACATTTCATTCTTAAAGTCGGTCACTCCAGAGACTCAACATGAGCAG ACGAGACAACTAANAAGGTTCAATGTTGGTGAGGACTGCCCGGTTTTTGATGGTCTTTAC TCGTTCTGT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O22446 |
Definition |
sp|O22446|HDA19_ARATH Histone deacetylase 19 OS=Arabidopsis thaliana |
Align length |
115 |
Score (bit) |
200.0 |
E-value |
5.0e-51 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TWS2 |
Definition |
tr|A9TWS2|A9TWS2_PHYPA Class I RPD3 type histone deacetylase protein OS=Physcomitrella patens subsp. patens |
Align length |
117 |
Score (bit) |
209.0 |
E-value |
1.0e-52 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK952442|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0014_B16, 5' (669 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9TWS2|A9TWS2_PHYPA Class I RPD3 type histone deacetylase pro... 209 1e-52 tr|A9TG19|A9TG19_PHYPA Class I RPD3 type histone deacetylase pro... 209 1e-52 tr|A8MSD0|A8MSD0_ARATH Uncharacterized protein At4g38130.2 OS=Ar... 200 6e-50 tr|Q9LKG1|Q9LKG1_MESCR Histone deacetylase OS=Mesembryanthemum c... 197 7e-49 tr|A7P8U9|A7P8U9_VITVI Chromosome chr3 scaffold_8, whole genome ... 196 1e-48 tr|A7PR61|A7PR61_VITVI Chromosome chr14 scaffold_26, whole genom... 195 2e-48 tr|A9PFZ1|A9PFZ1_POPTR Putative uncharacterized protein OS=Popul... 194 6e-48 tr|Q94F82|Q94F82_MAIZE Histone deacetylase HDA101 (Putative unch... 192 2e-47 tr|Q0Z9W2|Q0Z9W2_WHEAT Histone deacetylase HDAC3 OS=Triticum aes... 189 1e-46 tr|Q7Y0Y8|Q7Y0Y8_ORYSJ Os06g0583400 protein OS=Oryza sativa subs... 186 9e-46 tr|Q5VP94|Q5VP94_ORYSJ cDNA clone:J013135B02, full insert sequen... 186 9e-46 tr|B8AKR4|B8AKR4_ORYSI Putative uncharacterized protein OS=Oryza... 186 9e-46 tr|B4FE74|B4FE74_MAIZE Putative uncharacterized protein OS=Zea m... 186 1e-45 tr|B6TFF4|B6TFF4_MAIZE Putative uncharacterized protein OS=Zea m... 182 1e-44 tr|A3A4J0|A3A4J0_ORYSJ Putative uncharacterized protein OS=Oryza... 182 2e-44 tr|Q9AXF0|Q9AXF0_ORYSA Histone deacetylase HD1 OS=Oryza sativa P... 181 4e-44 tr|Q7Y0Y7|Q7Y0Y7_ORYSJ Histone deacetylase HDAC2 OS=Oryza sativa... 181 5e-44 tr|Q6YV04|Q6YV04_ORYSJ cDNA clone:J033118M13, full insert sequen... 181 5e-44 tr|Q6YV03|Q6YV03_ORYSJ Histone deacetylase HDAC2-like protein OS... 181 5e-44 tr|B8AE72|B8AE72_ORYSI Putative uncharacterized protein OS=Oryza... 180 8e-44 tr|Q7Y0Y6|Q7Y0Y6_ORYSJ Os02g0214900 protein OS=Oryza sativa subs... 176 1e-42 tr|Q69VQ0|Q69VQ0_ORYSJ Histone deacetylase HDAC3-like OS=Oryza s... 176 1e-42 tr|B8AE69|B8AE69_ORYSI Putative uncharacterized protein OS=Oryza... 176 1e-42 tr|A7PCT8|A7PCT8_VITVI Chromosome chr17 scaffold_12, whole genom... 165 2e-39 tr|A7RFA3|A7RFA3_NEMVE Predicted protein (Fragment) OS=Nematoste... 163 1e-38 tr|Q01EA7|Q01EA7_OSTTA Hda2 histone deacetylase (IC) OS=Ostreoco... 161 3e-38 tr|A4RSX7|A4RSX7_OSTLU Histone deacetylase OS=Ostreococcus lucim... 160 5e-38 tr|A5H658|A5H658_SCHMA Histone deacetylase 1 OS=Schistosoma mans... 160 7e-38 tr|Q5C310|Q5C310_SCHJA SJCHGC03938 protein (Fragment) OS=Schisto... 160 9e-38 tr|B6RB85|B6RB85_HALDI Histone deacetylase 2 (Fragment) OS=Halio... 160 9e-38
>tr|A9TWS2|A9TWS2_PHYPA Class I RPD3 type histone deacetylase protein OS=Physcomitrella patens subsp. patens GN=HDA1504 PE=4 SV=1 Length = 404
Score = 209 bits (533), Expect = 1e-52 Identities = 92/117 (78%), Positives = 103/117 (88%) Frame = +1
Query: 319 MDGGNALTGGPESRKKKVAYFYDPDVGNYYYGQGHPMKPHRIRMTHSLLVQYGLDRKMEM 498 M+GGN+L GPE RK++V+YFYDPDVGNYYYGQGHPMKPHRIRM HSLLV Y L +ME+ Sbjct: 1 MEGGNSLVAGPEGRKRRVSYFYDPDVGNYYYGQGHPMKPHRIRMAHSLLVHYNLHTRMEV 60
Query: 499 LKPLPARISDLCRFHADDYISFLKSVTPETQHEQTRQLXRFNVGEDCPVFDGLYSFC 669 L+P PAR DLCRFHADDY+SFLK VTPETQH+Q RQL RFNVGEDCPVFDGLY+FC Sbjct: 61 LRPYPARDRDLCRFHADDYVSFLKEVTPETQHDQMRQLKRFNVGEDCPVFDGLYNFC 117
>tr|A9TG19|A9TG19_PHYPA Class I RPD3 type histone deacetylase protein OS=Physcomitrella patens subsp. patens GN=HDA1505 PE=4 SV=1 Length = 466
Score = 209 bits (533), Expect = 1e-52 Identities = 92/117 (78%), Positives = 103/117 (88%) Frame = +1
Query: 319 MDGGNALTGGPESRKKKVAYFYDPDVGNYYYGQGHPMKPHRIRMTHSLLVQYGLDRKMEM 498 M+GGN+L GPE RK++V+YFYDPDVGNYYYGQGHPMKPHRIRM HSLLV Y L +ME+ Sbjct: 1 MEGGNSLVAGPEGRKRRVSYFYDPDVGNYYYGQGHPMKPHRIRMAHSLLVHYNLHTRMEV 60
Query: 499 LKPLPARISDLCRFHADDYISFLKSVTPETQHEQTRQLXRFNVGEDCPVFDGLYSFC 669 L+P PAR DLCRFHADDY+SFLK VTPETQH+Q RQL RFNVGEDCPVFDGLY+FC Sbjct: 61 LRPYPARDRDLCRFHADDYVSFLKEVTPETQHDQMRQLKRFNVGEDCPVFDGLYNFC 117
>tr|A8MSD0|A8MSD0_ARATH Uncharacterized protein At4g38130.2 OS=Arabidopsis thaliana GN=At4g38130 PE=4 SV=1 Length = 469
Score = 200 bits (509), Expect = 6e-50 Identities = 88/115 (76%), Positives = 100/115 (86%) Frame = +1
Query: 325 GGNALTGGPESRKKKVAYFYDPDVGNYYYGQGHPMKPHRIRMTHSLLVQYGLDRKMEMLK 504 GGN+L GP+ K+KV YFYDP+VGNYYYGQGHPMKPHRIRMTH+LL YGL + M++LK Sbjct: 4 GGNSLASGPDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVLK 63
Query: 505 PLPARISDLCRFHADDYISFLKSVTPETQHEQTRQLXRFNVGEDCPVFDGLYSFC 669 P PAR DLCRFHADDY+SFL+S+TPETQ +Q RQL RFNVGEDCPVFDGLYSFC Sbjct: 64 PFPARDRDLCRFHADDYVSFLRSITPETQQDQIRQLKRFNVGEDCPVFDGLYSFC 118
>tr|Q9LKG1|Q9LKG1_MESCR Histone deacetylase OS=Mesembryanthemum crystallinum GN=Hdeac1 PE=2 SV=1 Length = 500
Score = 197 bits (500), Expect = 7e-49 Identities = 86/115 (74%), Positives = 100/115 (86%) Frame = +1
Query: 325 GGNALTGGPESRKKKVAYFYDPDVGNYYYGQGHPMKPHRIRMTHSLLVQYGLDRKMEMLK 504 GGN+L GP+ K+KV+YFYDP+VGNYYYGQGHPMKPHRIRMTH+LL YGL + M++LK Sbjct: 4 GGNSLPSGPDGVKRKVSYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVLK 63
Query: 505 PLPARISDLCRFHADDYISFLKSVTPETQHEQTRQLXRFNVGEDCPVFDGLYSFC 669 P+PAR DLCRFHADDY+SFL+ +TPE Q +Q RQL RFNVGEDCPVFDGLYSFC Sbjct: 64 PVPARDRDLCRFHADDYVSFLRGITPEMQQDQLRQLKRFNVGEDCPVFDGLYSFC 118
>tr|A7P8U9|A7P8U9_VITVI Chromosome chr3 scaffold_8, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00036316001 PE=4 SV=1 Length = 445
Score = 196 bits (497), Expect = 1e-48 Identities = 86/115 (74%), Positives = 99/115 (86%) Frame = +1
Query: 325 GGNALTGGPESRKKKVAYFYDPDVGNYYYGQGHPMKPHRIRMTHSLLVQYGLDRKMEMLK 504 GGN+L G + K+KV+YFYDP+VGNYYYGQGHPMKPHRIRMTH+LL YGL + M++LK Sbjct: 4 GGNSLPSGADGVKRKVSYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVLK 63
Query: 505 PLPARISDLCRFHADDYISFLKSVTPETQHEQTRQLXRFNVGEDCPVFDGLYSFC 669 P PAR DLCRFHADDY+SFL+ +TPETQ +Q RQL RFNVGEDCPVFDGLYSFC Sbjct: 64 PFPARDRDLCRFHADDYVSFLRGITPETQQDQLRQLKRFNVGEDCPVFDGLYSFC 118
>tr|A7PR61|A7PR61_VITVI Chromosome chr14 scaffold_26, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00022343001 PE=4 SV=1 Length = 394
Score = 195 bits (496), Expect = 2e-48 Identities = 86/115 (74%), Positives = 99/115 (86%) Frame = +1
Query: 325 GGNALTGGPESRKKKVAYFYDPDVGNYYYGQGHPMKPHRIRMTHSLLVQYGLDRKMEMLK 504 GGN+L G + K+KV+YFYDP+VGNYYYGQGHPMKPHRIRMTH+LL YGL + M++LK Sbjct: 4 GGNSLPSGADGVKRKVSYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVLK 63
Query: 505 PLPARISDLCRFHADDYISFLKSVTPETQHEQTRQLXRFNVGEDCPVFDGLYSFC 669 P PAR DLCRFHADDY+SFL+ +TPETQ +Q RQL RFNVGEDCPVFDGLYSFC Sbjct: 64 PCPARDRDLCRFHADDYVSFLRGITPETQQDQLRQLKRFNVGEDCPVFDGLYSFC 118
>tr|A9PFZ1|A9PFZ1_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 499
Score = 194 bits (492), Expect = 6e-48 Identities = 87/116 (75%), Positives = 100/116 (86%), Gaps = 1/116 (0%) Frame = +1
Query: 325 GGNAL-TGGPESRKKKVAYFYDPDVGNYYYGQGHPMKPHRIRMTHSLLVQYGLDRKMEML 501 GGN+L + P+ K+KV YFYDP+VGNYYYGQGHPMKPHRIRMTH+LL YGL + M++L Sbjct: 4 GGNSLPSAAPDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVL 63
Query: 502 KPLPARISDLCRFHADDYISFLKSVTPETQHEQTRQLXRFNVGEDCPVFDGLYSFC 669 KP PAR DLCRFHADDY+SFL+S+TPETQ +Q RQL RFNVGEDCPVFDGLYSFC Sbjct: 64 KPFPARDRDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLYSFC 119
>tr|Q94F82|Q94F82_MAIZE Histone deacetylase HDA101 (Putative uncharacterized protein) OS=Zea mays GN=hda101 PE=2 SV=1 Length = 517
Score = 192 bits (487), Expect = 2e-47 Identities = 87/116 (75%), Positives = 100/116 (86%), Gaps = 1/116 (0%) Frame = +1
Query: 325 GGNALTG-GPESRKKKVAYFYDPDVGNYYYGQGHPMKPHRIRMTHSLLVQYGLDRKMEML 501 GGN+L GP+ +K++V YFYDPDVGNYYYGQGHPMKPHRIRMTHSLL +YGL +M++ Sbjct: 9 GGNSLPSVGPDGQKRRVCYFYDPDVGNYYYGQGHPMKPHRIRMTHSLLARYGLLNQMQVY 68
Query: 502 KPLPARISDLCRFHADDYISFLKSVTPETQHEQTRQLXRFNVGEDCPVFDGLYSFC 669 +P PAR DLCRFHADDYI+FL+SVTPETQ +Q R L RFNVGEDCPVFDGLYSFC Sbjct: 69 RPNPARDRDLCRFHADDYINFLRSVTPETQQDQIRLLKRFNVGEDCPVFDGLYSFC 124
>tr|Q0Z9W2|Q0Z9W2_WHEAT Histone deacetylase HDAC3 OS=Triticum aestivum PE=2 SV=1 Length = 519
Score = 189 bits (480), Expect = 1e-46 Identities = 87/116 (75%), Positives = 99/116 (85%), Gaps = 1/116 (0%) Frame = +1
Query: 325 GGNALTG-GPESRKKKVAYFYDPDVGNYYYGQGHPMKPHRIRMTHSLLVQYGLDRKMEML 501 GGN+L GP+ +K++V YFYD +VGNYYYGQGHPMKPHRIRMTHSLL QYGL +M++L Sbjct: 9 GGNSLPSVGPDGQKRRVCYFYDSEVGNYYYGQGHPMKPHRIRMTHSLLAQYGLLDQMQVL 68
Query: 502 KPLPARISDLCRFHADDYISFLKSVTPETQHEQTRQLXRFNVGEDCPVFDGLYSFC 669 +P PAR DLCRFHADDYISFL+SVTPETQ +Q R L RFNVGEDCPVFDGLYS C Sbjct: 69 RPNPARDRDLCRFHADDYISFLRSVTPETQQDQIRALKRFNVGEDCPVFDGLYSLC 124
>tr|Q7Y0Y8|Q7Y0Y8_ORYSJ Os06g0583400 protein OS=Oryza sativa subsp. japonica GN=Os06g0583400 PE=2 SV=1 Length = 518
Score = 186 bits (473), Expect = 9e-46 Identities = 85/116 (73%), Positives = 98/116 (84%), Gaps = 1/116 (0%) Frame = +1
Query: 325 GGNAL-TGGPESRKKKVAYFYDPDVGNYYYGQGHPMKPHRIRMTHSLLVQYGLDRKMEML 501 GGN+L T G + K++V YFYD +VGNYYYGQGHPMKPHRIRMTH+LL YGL +M++L Sbjct: 8 GGNSLPTAGADGAKRRVCYFYDAEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLDQMQVL 67
Query: 502 KPLPARISDLCRFHADDYISFLKSVTPETQHEQTRQLXRFNVGEDCPVFDGLYSFC 669 KP PAR DLCRFHADDY++FL+SVTPETQ +Q R L RFNVGEDCPVFDGLYSFC Sbjct: 68 KPHPARDRDLCRFHADDYVAFLRSVTPETQQDQIRALKRFNVGEDCPVFDGLYSFC 123
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