DK952454 [AcEST]

DK952454
Clone id	TST38A01NGRL0014_C04
Library	TST38
Length	364
Definition	Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0014_C04. 5' end sequence.
Accession	DK952454
Tissue type	prothallia
Developmental stage	gametophyte
Contig ID	CL1Contig3
Sequence	GTGTTTTCTTATTATTTCTCCAAAATTAGAGGTAGATTAATCAATCTCGTCACTCATTCA TTTCAAGAACTAGGGAAGATAGTGACGAAGCAGAATTGTTTTGGTACCCCAAGAAATACT TGGTTTAATTTCTACTTCCGGGGAGATAAATAAAGAAAAAAATCTATGGGTAGACGTCTA AGATAGCTGACTCATCGTCACTAAACCTCAGAGAATAAATCTGGGAAAGAAAGTTGGAAT AAATAAATCCGGGTTTGTCAAGATTATTGAACATCTATTTGGTTGAACGGGATCCCTCGT TTCAACAACTCGGTGAGATATATTTCCCTAAGGGTTTTTTCCTGAAAAAAAAAAAAAAAA AAAA
■■Homology search results ■■	-
Swiss-Prot (release 56.9)	Link to BlastX Result : Swiss-Prot
sp_hit_id	O43114
Definition	sp\|O43114\|ORC5_SCHPO Origin recognition complex subunit 5 OS=Schizosaccharomyces pombe
Align length	57
Score (bit)	31.2
E-value	1.7
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK952454\|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0014_C04, 5' (344 letters) Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp\|O43114\|ORC5_SCHPO Origin recognition complex subunit 5 OS=Sch... 31 1.7 sp\|O51578\|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrel... 30 3.7 >sp\|O43114\|ORC5_SCHPO Origin recognition complex subunit 5 OS=Schizosaccharomyces pombe GN=orc5 PE=1 SV=2 Length = 455 Score = 31.2 bits (69), Expect = 1.7 Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 8/57 (14%) Frame = +2 Query: 125 LISTSGEINKEKNLWVDVDSLIVTKPQRI--------NLGKKVGINKSGFVKIIE 271 L+ T+ +++KE+N+W+++ D + RI ++ K GIN SGF+ ++E Sbjct: 51 LLRTAFDLSKEENVWINLQDCFTVAHFWYRILIKVGVDKDIALKKGINISGFIYLLE 107 >sp\|O51578\|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrelia burgdorferi GN=recB PE=3 SV=1 Length = 1169 Score = 30.0 bits (66), Expect = 3.7 Identities = 19/55 (34%), Positives = 30/55 (54%) Frame = +2 Query: 95 IVLVPQEILGLISTSGEINKEKNLWVDVDSLIVTKPQRINLGKKVGINKSGFV 259 IVL+ + + LI+ +I EKNLW+ + + +TK Q+I K IN G + Sbjct: 624 IVLLEKNEITLINAINKITFEKNLWIKIAN----ITKDQKIIEWAKNKINYKGLL 674
TrEMBL (release 39.9)	Link to BlastX Result : TrEMBL
tr_hit_id	Q54CB7
Definition	tr\|Q54CB7\|Q54CB7_DICDI Putative uncharacterized protein OS=Dictyostelium discoideum
Align length	55
Score (bit)	32.7
E-value	9.3
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK952454\|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0014_C04, 5' (344 letters) Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr\|Q54CB7\|Q54CB7_DICDI Putative uncharacterized protein OS=Dicty... 33 9.3 >tr\|Q54CB7\|Q54CB7_DICDI Putative uncharacterized protein OS=Dictyostelium discoideum GN=DDB_0191758 PE=4 SV=1 Length = 955 Score = 32.7 bits (73), Expect = 9.3 Identities = 19/55 (34%), Positives = 28/55 (50%) Frame = +2 Query: 116 ILGLISTSGEINKEKNLWVDVDSLIVTKPQRINLGKKVGINKSGFVKIIEHLF 280 I+G ++ SGE+N E ++ DS +T IN+GK IN S + I F Sbjct: 745 IIGTLNVSGELNSENGQFIFTLDS---LTNSTFINIGKNATINNSTLIIRINQYF 796