DK952472 |
Clone id |
TST38A01NGRL0014_C22 |
Library |
TST38 |
Length |
586 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0014_C22. 5' end sequence. |
Accession |
DK952472 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL2746Contig1 |
Sequence |
CGGCTCTACTTGCGTCAAGAAAACCAGCTTTTTTACAGGAAGAAGAGAGGTCCCGGAATG AGTACAAACGTGGGGTGAGCTGTTGGAGTTTCGATGTTGAGAGTCTGAAAGATCAAGCTG CTGCAATCCATGATGAGGAAGAGATCTCAAGTACAGACAAAGGGCTTGCTGTTTTGTCCC CTTGTGGAGAAGAGGCTAGACAGTCACTGACTTTGGATACACACCAGTTTAGGAGATCAT ATGACAGAGAACCAAAGCAATTCGGAAGATTTGGTGTCTTTGATGGAGATTTGGAGTTGG AAAGTCCAGGATGGCATGTTGTGAGACCAATAAGAACTTCTGAGGATGCTCAAAAGCTCC CTACAATAGTGGAGGACAAAGGAAGGAATGGCTCAAGTGAGAGAGGTCTGGAAAACTTAG ATTCATCCAACAGCAGCCGCCTCATGGATGTCCTTCCTAATGGAAAAAGTTCTGTAAGGC ATGATGATGACAGTAAAGGATAAGCAAGCGAAGAGACTGGACAGCAGTGTAAAGAAAATG GGAACTCAGTTGATGTCTGTAAAGAAAATGGGAACTCGACTACTGT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9Y247 |
Definition |
sp|Q9Y247|FA50B_HUMAN Protein FAM50B OS=Homo sapiens |
Align length |
30 |
Score (bit) |
32.7 |
E-value |
1.4 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7QJ71 |
Definition |
tr|A7QJ71|A7QJ71_VITVI Chromosome chr2 scaffold_105, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
48 |
Score (bit) |
52.8 |
E-value |
1.0e-05 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK952472|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0014_C22, 5' (586 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7QJ71|A7QJ71_VITVI Chromosome chr2 scaffold_105, whole genom... 53 1e-05 tr|A5BLX5|A5BLX5_VITVI Putative uncharacterized protein OS=Vitis... 53 1e-05 tr|B4FBG9|B4FBG9_MAIZE Putative uncharacterized protein OS=Zea m... 52 3e-05 tr|Q10SQ6|Q10SQ6_ORYSJ Os03g0114300 protein OS=Oryza sativa subs... 51 5e-05 tr|B8ALY6|B8ALY6_ORYSI Putative uncharacterized protein OS=Oryza... 51 5e-05 tr|A7PM90|A7PM90_VITVI Chromosome chr14 scaffold_21, whole genom... 50 7e-05 tr|Q9SU46|Q9SU46_ARATH Putative uncharacterized protein AT4g2410... 50 9e-05 tr|Q8W2Y7|Q8W2Y7_ORYSA Putative Ste-20 related kinase, 3'-partia... 50 1e-04 tr|Q8RWU9|Q8RWU9_ARATH Putative uncharacterized protein At4g2410... 50 1e-04 tr|Q337B2|Q337B2_ORYSJ Os10g0518800 protein OS=Oryza sativa subs... 50 1e-04 tr|Q109E3|Q109E3_ORYSJ Protein kinase domain containing protein,... 50 1e-04 tr|B8BHW3|B8BHW3_ORYSI Putative uncharacterized protein OS=Oryza... 50 1e-04 tr|A9TGS0|A9TGS0_PHYPA Predicted protein OS=Physcomitrella paten... 49 2e-04 tr|A7PVH3|A7PVH3_VITVI Chromosome chr9 scaffold_33, whole genome... 49 2e-04 tr|A3A3S1|A3A3S1_ORYSJ Putative uncharacterized protein OS=Oryza... 48 4e-04 tr|A2X1L1|A2X1L1_ORYSI Putative uncharacterized protein OS=Oryza... 48 4e-04 tr|Q7X9J3|Q7X9J3_WHEAT Ste20-related protein (Fragment) OS=Triti... 48 5e-04 tr|Q6K9M3|Q6K9M3_ORYSJ Putative MAP4K alpha1 OS=Oryza sativa sub... 48 5e-04 tr|Q0DWW4|Q0DWW4_ORYSJ Os02g0791700 protein OS=Oryza sativa subs... 48 5e-04 tr|B8AE28|B8AE28_ORYSI Putative uncharacterized protein OS=Oryza... 48 5e-04 tr|A3AC63|A3AC63_ORYSJ Putative uncharacterized protein OS=Oryza... 48 5e-04 tr|Q6ETL7|Q6ETL7_ORYSJ Putative oxidative-stress responsive 1 OS... 47 8e-04 tr|B4FQP2|B4FQP2_MAIZE Putative uncharacterized protein OS=Zea m... 46 0.001 tr|B6U6J4|B6U6J4_MAIZE ATP binding protein OS=Zea mays PE=2 SV=1 46 0.002 tr|A7L4B0|A7L4B0_CARPA Protein kinase OS=Carica papaya PE=4 SV=1 45 0.004 tr|B6U2B2|B6U2B2_MAIZE STE20/SPS1-related proline-alanine-rich p... 44 0.009 tr|O82489|O82489_ARATH T12H20.4 protein OS=Arabidopsis thaliana ... 42 0.019 tr|A9S0F3|A9S0F3_PHYPA Predicted protein OS=Physcomitrella paten... 42 0.019 tr|A9RK00|A9RK00_PHYPA Predicted protein OS=Physcomitrella paten... 42 0.019 tr|A5C5G7|A5C5G7_VITVI Putative uncharacterized protein OS=Vitis... 42 0.019
>tr|A7QJ71|A7QJ71_VITVI Chromosome chr2 scaffold_105, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00000530001 PE=4 SV=1 Length = 637
Score = 52.8 bits (125), Expect = 1e-05 Identities = 24/48 (50%), Positives = 35/48 (72%) Frame = +3
Query: 3 ALLASRKPAFLQEEERSRNEYKRGVSCWSFDVESLKDQAAAIHDEEEI 146 A LA +K ++E S++EYKRGVS W+FD+E LK QA+ + D++EI Sbjct: 220 AQLALKKMPSAEQEAISQSEYKRGVSAWNFDIEDLKVQASLVQDDDEI 267
>tr|A5BLX5|A5BLX5_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039089 PE=4 SV=1 Length = 1077
Score = 52.8 bits (125), Expect = 1e-05 Identities = 24/48 (50%), Positives = 35/48 (72%) Frame = +3
Query: 3 ALLASRKPAFLQEEERSRNEYKRGVSCWSFDVESLKDQAAAIHDEEEI 146 A LA +K ++E S++EYKRGVS W+FD+E LK QA+ + D++EI Sbjct: 431 AQLALKKMPSAEQEAISQSEYKRGVSAWNFDIEDLKVQASLVQDDDEI 478
>tr|B4FBG9|B4FBG9_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 741
Score = 51.6 bits (122), Expect = 3e-05 Identities = 24/46 (52%), Positives = 33/46 (71%) Frame = +3
Query: 3 ALLASRKPAFLQEEERSRNEYKRGVSCWSFDVESLKDQAAAIHDEE 140 A LA +K ++E S +EY+RGVS W+FD+E LK QA+ IHD+E Sbjct: 326 AQLALKKMPSSEQEALSLSEYQRGVSAWNFDIEDLKAQASLIHDDE 371
>tr|Q10SQ6|Q10SQ6_ORYSJ Os03g0114300 protein OS=Oryza sativa subsp. japonica GN=Os03g0114300 PE=4 SV=1 Length = 741
Score = 50.8 bits (120), Expect = 5e-05 Identities = 23/46 (50%), Positives = 33/46 (71%) Frame = +3
Query: 3 ALLASRKPAFLQEEERSRNEYKRGVSCWSFDVESLKDQAAAIHDEE 140 A LA +K ++E S +EY+RGVS W+FD+E LK QA+ IHD++ Sbjct: 326 AQLALKKMPSSEQEALSMSEYQRGVSAWNFDIEDLKAQASLIHDDD 371
>tr|B8ALY6|B8ALY6_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_09719 PE=4 SV=1 Length = 744
Score = 50.8 bits (120), Expect = 5e-05 Identities = 23/46 (50%), Positives = 33/46 (71%) Frame = +3
Query: 3 ALLASRKPAFLQEEERSRNEYKRGVSCWSFDVESLKDQAAAIHDEE 140 A LA +K ++E S +EY+RGVS W+FD+E LK QA+ IHD++ Sbjct: 326 AQLALKKMPSSEQEALSMSEYQRGVSAWNFDIEDLKAQASLIHDDD 371
>tr|A7PM90|A7PM90_VITVI Chromosome chr14 scaffold_21, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00020728001 PE=4 SV=1 Length = 679
Score = 50.4 bits (119), Expect = 7e-05 Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 1/74 (1%) Frame = +3
Query: 6 LLASRKPAFLQEEERSRNEYKRGVSCWSFDVESLKDQAAAIHDEEEISST-DKGLAVLSP 182 LL K + +E+ S+ EY RG+S W+F++E LK+QAA I D + IS+ D + +P Sbjct: 309 LLVQNKALYGDKEQLSQQEYIRGISAWNFNLEDLKNQAALIQDYDVISNVDDPDCSNAAP 368
Query: 183 CGEEARQSLTLDTH 224 E + L L H Sbjct: 369 SHEVSLPMLKLSPH 382
>tr|Q9SU46|Q9SU46_ARATH Putative uncharacterized protein AT4g24100 OS=Arabidopsis thaliana GN=AT4g24100 PE=4 SV=1 Length = 710
Score = 50.1 bits (118), Expect = 9e-05 Identities = 22/46 (47%), Positives = 33/46 (71%) Frame = +3
Query: 9 LASRKPAFLQEEERSRNEYKRGVSCWSFDVESLKDQAAAIHDEEEI 146 LA ++ A EE S++EY+RGVS W+FDV LK QA+ ++D E++ Sbjct: 336 LALKRMATADEEAISQSEYQRGVSAWNFDVRDLKTQASLVNDREQV 381
>tr|Q8W2Y7|Q8W2Y7_ORYSA Putative Ste-20 related kinase, 3'-partial (Fragment) OS=Oryza sativa GN=OSJNBa0056G08.1 PE=4 SV=1 Length = 541
Score = 49.7 bits (117), Expect = 1e-04 Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 2/54 (3%) Frame = +3
Query: 3 ALLASRKPAFLQEEERSRNEYKRGVSCWSFDVESLKDQAAAIHDEE--EISSTD 158 A LA +K ++E S +EY+RGVS W+FDVE LK QA+ I D+E EI D Sbjct: 320 AQLALKKMPSSEQEALSMSEYQRGVSAWNFDVEDLKAQASLIRDDEPPEIKEDD 373
>tr|Q8RWU9|Q8RWU9_ARATH Putative uncharacterized protein At4g24100 OS=Arabidopsis thaliana GN=At4g24100 PE=2 SV=1 Length = 709
Score = 49.7 bits (117), Expect = 1e-04 Identities = 28/81 (34%), Positives = 45/81 (55%) Frame = +3
Query: 9 LASRKPAFLQEEERSRNEYKRGVSCWSFDVESLKDQAAAIHDEEEISSTDKGLAVLSPCG 188 LA ++ A EE S++EY+RGVS W+FDV LK QA+ + D++++ Sbjct: 329 LALKRMATADEEAISQSEYQRGVSAWNFDVRDLKTQASLLIDDDDL-------------- 374
Query: 189 EEARQSLTLDTHQFRRSYDRE 251 EE+++ + QF + DRE Sbjct: 375 EESKEDEEILCAQFNKVNDRE 395
>tr|Q337B2|Q337B2_ORYSJ Os10g0518800 protein OS=Oryza sativa subsp. japonica GN=Os10g0518800 PE=4 SV=2 Length = 741
Score = 49.7 bits (117), Expect = 1e-04 Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 2/54 (3%) Frame = +3
Query: 3 ALLASRKPAFLQEEERSRNEYKRGVSCWSFDVESLKDQAAAIHDEE--EISSTD 158 A LA +K ++E S +EY+RGVS W+FDVE LK QA+ I D+E EI D Sbjct: 320 AQLALKKMPSSEQEALSMSEYQRGVSAWNFDVEDLKAQASLIRDDEPPEIKEDD 373
|