DK952481
Clone id TST38A01NGRL0014_D07
Library
Length 644
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0014_D07. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence
GGGACCAGAAGATGGGTCTGGTCCCCCCTCCCCTTAAAGAGAATCCTTTATTAGGGAGAA
TCTTTTAAATCTCTGACTCGATGGTCGTTCCTTCCCGTAAGGGAAATCCGAGAGACGAGC
TCTCAATCCCTTTTCCGTCTATACTCGGAGTTGAGACTCCGCAAACAATTTCCGAATTCC
GTTTCCGGAAACGGAATTCCCAAGCGTAGGCCGAAGCCTTCTTGCTTCTCCTTCGCGATG
AAGTACCTACAAACACACACACAAACACGCGACAACAATTCGTATGGCGAATCCACAATA
GATACCTGTCGCTCTTGCGCGGGAAAAGCAACTTCCGTGCTTCGTAGTCTCGCGATCTCT
TGCGTTATCTGGCGGCAGAGTCCTCTCTTGCTAACGTTGGTAATTTCAGTGAGGGCATGT
GGCGCTTTTATAGCTCCTTTGCCACGGCACGAATAGCTGCTCGCGTAGAAATCGCGGCCG
GGTTTTTTTCTTTTTTCTTTTTTTTAGCTGCTCTACCCGGAATAGGGAGAGAGAATTCGC
TAGCTGGTTTTGTTGCTTTATTTTCTAAGTGGCTGCCCACTTATTAAGTGGGCGGCCGGC
ATATTTTAAAATTGATCTGAACCTGCCCAAAAACTCAATAAAAC
■■Homology search results ■■ -
sp_hit_id Q21926
Definition sp|Q21926|SYIC_CAEEL Isoleucyl-tRNA synthetase, cytoplasmic OS=Caenorhabditis elegans
Align length 42
Score (bit) 30.4
E-value 8.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK952481|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0014_D07, 5'
(644 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q21926|SYIC_CAEEL Isoleucyl-tRNA synthetase, cytoplasmic OS=C... 30 8.2

>sp|Q21926|SYIC_CAEEL Isoleucyl-tRNA synthetase, cytoplasmic
OS=Caenorhabditis elegans GN=irs-1 PE=2 SV=1
Length = 1141

Score = 30.4 bits (67), Expect = 8.2
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -1

Query: 410 TEITNVSKRGLCRQITQEIARLRSTEVAFPAQERQVSIVDSP 285
TE ++ + GLCR++T + RLR V IV SP
Sbjct: 968 TEDESLIEEGLCREVTNRVQRLRKQAKLVSTDTAHVHIVVSP 1009


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK952481|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0014_D07, 5'
(644 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******