DK952482 |
Clone id |
TST38A01NGRL0014_D08 |
Library |
TST38 |
Length |
623 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0014_D08. 5' end sequence. |
Accession |
DK952482 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL127Contig1 |
Sequence |
TTCGCGTTGTAGCGGAGAGGAAGGCCACCATTTTTGCTCGGTTTCGCAAACCCTGTTCTC TGCGGTGCCATCTCTTCTGAGGACCTTCCATTCGGCAGGCAGGACATACATAGTATCTAG TTTACGGAAAGCCTTTGCCATAAAGAACAATGGTGTCAGATGCAAGCAAGAAGAAGGCAG CTCAAAAGAAAGCAGCTGCTGCAGCAAAGCGTGGCTCCAAAGCCACTGCCACCACTGCAG CCTCATCTAAGACCAATGGGGTCTCAAATTCAACCTCAAATGAAGTTGCAGATGAGATCG CTTCCATGCAGATAACTGATAGAACATGTACAGGGATCCTTGCATCGCATCCACAATCGA GAGATATTCATATTGAAAGTTTATCAGTTACGTTCCATGGCCACGATCTAATTGTTGACT CAAGTCTTGAACTCAATTATGGAAGGCGGTATGGGTTGCTTGGGTTGAATGGTTGTGGAA AGTCAACCCTTCTAGCTTCTATAGGTTGTAGAGAGCTGCCTATTCCAGATCATATGGATA TCTACCATTTGACCCGCGAAATTGAAGCAACTGATTTGACTTCTTTGCAAGCGGTCGTGA ACGTAGATGAAGAAAGGGTCAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q99LE6 |
Definition |
sp|Q99LE6|ABCF2_MOUSE ATP-binding cassette sub-family F member 2 OS=Mus musculus |
Align length |
99 |
Score (bit) |
104.0 |
E-value |
3.0e-22 |
Report |
 |
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q2TUH6 |
Definition |
tr|Q2TUH6|Q2TUH6_PTEVI ATP-binding cassette transporter OS=Pteris vittata |
Align length |
123 |
Score (bit) |
200.0 |
E-value |
5.0e-50 |
Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK952482|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0014_D08, 5' (623 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q2TUH6|Q2TUH6_PTEVI ATP-binding cassette transporter OS=Pteri... 200 5e-50 tr|A9NVC5|A9NVC5_PICSI Putative uncharacterized protein OS=Picea... 169 2e-40 tr|A9TM80|A9TM80_PHYPA ATP-binding cassette transporter, subfami... 164 3e-39 tr|A9T8D4|A9T8D4_PHYPA ATP-binding cassette transporter, subfami... 163 9e-39 tr|A9RU54|A9RU54_PHYPA ATP-binding cassette transporter, subfami... 161 3e-38 tr|Q9MAY4|Q9MAY4_POPNI ABC transporter homolog OS=Populus nigra ... 160 4e-38 tr|Q84ZB2|Q84ZB2_ORYSJ Os08g0564100 protein OS=Oryza sativa subs... 160 7e-38 tr|B8B9L7|B8B9L7_ORYSI Putative uncharacterized protein OS=Oryza... 160 7e-38 tr|B4FZI2|B4FZI2_MAIZE Putative uncharacterized protein OS=Zea m... 157 5e-37 tr|Q5GMM7|Q5GMM7_CAPCH ABC transporter protein (Fragment) OS=Cap... 152 2e-35 tr|A7PQT1|A7PQT1_VITVI Chromosome chr6 scaffold_25, whole genome... 150 6e-35 tr|Q9FJH6|Q9FJH6_ARATH ABC transporter (At5g60790) (Putative ABC... 148 2e-34 tr|Q650Z9|Q650Z9_ORYSJ Os09g0572400 protein OS=Oryza sativa subs... 140 8e-32 tr|Q4RMY3|Q4RMY3_TETNG Chromosome 6 SCAF15017, whole genome shot... 124 3e-27 tr|A7SFE5|A7SFE5_NEMVE Predicted protein OS=Nematostella vectens... 118 3e-25 tr|Q1HQD2|Q1HQD2_BOMMO ATP-binding cassette sub-family F member ... 117 4e-25 tr|B5X0Y6|B5X0Y6_SALSA ATP-binding cassette sub-family F member ... 116 1e-24 tr|Q802V8|Q802V8_DANRE ATP-binding cassette, sub-family F (GCN20... 115 3e-24 tr|Q6NYQ1|Q6NYQ1_DANRE Abcf2 protein OS=Danio rerio GN=abcf2 PE=... 115 3e-24 tr|Q16RE9|Q16RE9_AEDAE ATP-dependent transporter OS=Aedes aegypt... 114 5e-24 tr|B0W6T7|B0W6T7_CULQU ATP-binding cassette sub-family F member ... 112 1e-23 tr|B6P4V1|B6P4V1_BRAFL Putative uncharacterized protein OS=Branc... 110 7e-23 tr|B4MA76|B4MA76_DROVI GJ15717 OS=Drosophila virilis GN=GJ15717 ... 110 7e-23 tr|Q7PQX1|Q7PQX1_ANOGA AGAP002693-PA (Fragment) OS=Anopheles gam... 109 1e-22 tr|Q29IA7|Q29IA7_DROPS GA21666 OS=Drosophila pseudoobscura pseud... 109 2e-22 tr|B4R5G2|B4R5G2_DROSI GD15784 OS=Drosophila simulans GN=GD15784... 109 2e-22 tr|B4PWR4|B4PWR4_DROYA GE16028 OS=Drosophila yakuba GN=GE16028 P... 109 2e-22 tr|B4L701|B4L701_DROMO GI16072 OS=Drosophila mojavensis GN=GI160... 109 2e-22 tr|B4JX52|B4JX52_DROGR GH17634 OS=Drosophila grimshawi GN=GH1763... 109 2e-22 tr|B4IKA8|B4IKA8_DROSE GM22536 OS=Drosophila sechellia GN=GM2253... 109 2e-22
>tr|Q2TUH6|Q2TUH6_PTEVI ATP-binding cassette transporter OS=Pteris vittata GN=ABCT1 PE=2 SV=1 Length = 597
Score = 200 bits (509), Expect = 5e-50 Identities = 100/123 (81%), Positives = 107/123 (86%) Frame = +3
Query: 255 NGVSNSTSNEVADEIASMQITDRTCTGILASHPQSRDIHIESLSVTFHGHDLIVDSSLEX 434 NGVSNS+ NEVADE+A MQITDRTCTGILASHPQSRDIHIESL+VTFHGHDLIVDSSLE Sbjct: 36 NGVSNSSPNEVADEMAYMQITDRTCTGILASHPQSRDIHIESLTVTFHGHDLIVDSSLEL 95
Query: 435 XXXXXXXXXXXXXCGKSTLLASIGCRELPIPDHMDIYHLTREIEATDLTSLQAVVNVDEE 614 CGKSTLL++IGCRELPIP+HMDIYHLTREIEATDLTSLQAVVNVDEE Sbjct: 96 NYRRRYGLLGLNGCGKSTLLSAIGCRELPIPEHMDIYHLTREIEATDLTSLQAVVNVDEE 155
Query: 615 RVK 623 R+K Sbjct: 156 RIK 158
>tr|A9NVC5|A9NVC5_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 599
Score = 169 bits (427), Expect = 2e-40 Identities = 80/119 (67%), Positives = 94/119 (78%) Frame = +3
Query: 267 NSTSNEVADEIASMQITDRTCTGILASHPQSRDIHIESLSVTFHGHDLIVDSSLEXXXXX 446 N + VAD++A +QI+DRTCTG+L SH SRDIHIESLSVTFHGH+LIVDS LE Sbjct: 42 NGNAERVADQLADLQISDRTCTGVLTSHALSRDIHIESLSVTFHGHELIVDSELELNYGR 101
Query: 447 XXXXXXXXXCGKSTLLASIGCRELPIPDHMDIYHLTREIEATDLTSLQAVVNVDEERVK 623 CGKSTLL ++GCRE+PIPDHMDIYHLTREIEATD+TSL+AV+N DEER+K Sbjct: 102 RYGLLGLNGCGKSTLLTALGCREIPIPDHMDIYHLTREIEATDMTSLEAVMNCDEERLK 160
>tr|A9TM80|A9TM80_PHYPA ATP-binding cassette transporter, subfamily F, member 1 protein PpABCF2 OS=Physcomitrella patens subsp. patens GN=ppabcf2 PE=3 SV=1 Length = 597
Score = 164 bits (416), Expect = 3e-39 Identities = 78/120 (65%), Positives = 98/120 (81%) Frame = +3
Query: 264 SNSTSNEVADEIASMQITDRTCTGILASHPQSRDIHIESLSVTFHGHDLIVDSSLEXXXX 443 + +T+ +A+E+A+ +ITDRTCTG+LASHPQSRDIHIESLSVTFHGH+L+ DS+LE Sbjct: 39 AGATAESLAEEMAAARITDRTCTGVLASHPQSRDIHIESLSVTFHGHELVSDSTLELNYG 98
Query: 444 XXXXXXXXXXCGKSTLLASIGCRELPIPDHMDIYHLTREIEATDLTSLQAVVNVDEERVK 623 CGKSTLL +IG RE+PIP+HMDIYHLT+EI+ATDLT+L+AV NVDEER+K Sbjct: 99 RRYGLLGLNGCGKSTLLTAIGLREVPIPEHMDIYHLTKEIDATDLTALEAVKNVDEERLK 158
>tr|A9T8D4|A9T8D4_PHYPA ATP-binding cassette transporter, subfamily F, member 3 protein PpABCF3 OS=Physcomitrella patens subsp. patens GN=ppabcf3 PE=3 SV=1 Length = 597
Score = 163 bits (412), Expect = 9e-39 Identities = 81/121 (66%), Positives = 98/121 (80%), Gaps = 1/121 (0%) Frame = +3
Query: 261 VSN-STSNEVADEIASMQITDRTCTGILASHPQSRDIHIESLSVTFHGHDLIVDSSLEXX 437 VSN +T++ +A+E+A+ ITDRTCTGILASH QSRDIHIESLSVTFHGH+L+ DS+LE Sbjct: 37 VSNGTTADTLAEELAAANITDRTCTGILASHAQSRDIHIESLSVTFHGHELVADSTLELN 96
Query: 438 XXXXXXXXXXXXCGKSTLLASIGCRELPIPDHMDIYHLTREIEATDLTSLQAVVNVDEER 617 CGKSTLL +IG RE+PIP+HMDIYHLTREI+ATD+TSLQAV+NVD ER Sbjct: 97 YGRRYGLLGLNGCGKSTLLTAIGLREVPIPEHMDIYHLTREIDATDMTSLQAVMNVDSER 156
Query: 618 V 620 + Sbjct: 157 L 157
>tr|A9RU54|A9RU54_PHYPA ATP-binding cassette transporter, subfamily F, member 4 protein PpABCF4 OS=Physcomitrella patens subsp. patens GN=ppabcf4 PE=3 SV=1 Length = 597
Score = 161 bits (407), Expect = 3e-38 Identities = 79/121 (65%), Positives = 97/121 (80%), Gaps = 1/121 (0%) Frame = +3
Query: 261 VSNSTSNE-VADEIASMQITDRTCTGILASHPQSRDIHIESLSVTFHGHDLIVDSSLEXX 437 V+N TS + +A+E+A+ ITDRTCTG+LASH QSRDIHIESLSVTFHGH+L+ DS+LE Sbjct: 37 VTNGTSADTLAEELAAANITDRTCTGVLASHAQSRDIHIESLSVTFHGHELVADSTLELN 96
Query: 438 XXXXXXXXXXXXCGKSTLLASIGCRELPIPDHMDIYHLTREIEATDLTSLQAVVNVDEER 617 CGKSTLL +IG RE+PIP+HMDIYHLTREI+ATD+T+LQAV+NVD ER Sbjct: 97 YGRRYGLLGLNGCGKSTLLTAIGLREVPIPEHMDIYHLTREIDATDMTALQAVMNVDSER 156
Query: 618 V 620 + Sbjct: 157 L 157
>tr|Q9MAY4|Q9MAY4_POPNI ABC transporter homolog OS=Populus nigra GN=PnATH PE=2 SV=1 Length = 565
Score = 160 bits (406), Expect = 4e-38 Identities = 79/124 (63%), Positives = 97/124 (78%), Gaps = 4/124 (3%) Frame = +3
Query: 264 SNSTSNEVADEIAS----MQITDRTCTGILASHPQSRDIHIESLSVTFHGHDLIVDSSLE 431 ++ + NE D++++ +QI+DRTCTG+L SHP SRDI IESLSVTFHGHDLIVDS LE Sbjct: 39 ASDSQNEGVDKLSNGFGALQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELE 98
Query: 432 XXXXXXXXXXXXXXCGKSTLLASIGCRELPIPDHMDIYHLTREIEATDLTSLQAVVNVDE 611 CGKSTLLA+IGCRELPIPDHMDIYHLTREIEA+D++SL+AV++ DE Sbjct: 99 LNYGRRYGLLGLNGCGKSTLLAAIGCRELPIPDHMDIYHLTREIEASDMSSLEAVISCDE 158
Query: 612 ERVK 623 ER+K Sbjct: 159 ERLK 162
>tr|Q84ZB2|Q84ZB2_ORYSJ Os08g0564100 protein OS=Oryza sativa subsp. japonica GN=P0705A05.111 PE=2 SV=1 Length = 592
Score = 160 bits (404), Expect = 7e-38 Identities = 76/120 (63%), Positives = 97/120 (80%) Frame = +3
Query: 264 SNSTSNEVADEIASMQITDRTCTGILASHPQSRDIHIESLSVTFHGHDLIVDSSLEXXXX 443 S+S +++ A+ IA+++++DRTCTG+LASHP SRDIHIESLS+TFHGHDLIVDS LE Sbjct: 32 SSSAADKAANGIAALKLSDRTCTGVLASHPLSRDIHIESLSLTFHGHDLIVDSELELNYG 91
Query: 444 XXXXXXXXXXCGKSTLLASIGCRELPIPDHMDIYHLTREIEATDLTSLQAVVNVDEERVK 623 CGKSTLL +IGCRELPIP+HMDIYHL+ EIEA+D+++LQAV+ DEER+K Sbjct: 92 RRYGLLGLNGCGKSTLLTAIGCRELPIPEHMDIYHLSSEIEASDMSALQAVICCDEERMK 151
>tr|B8B9L7|B8B9L7_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_30302 PE=4 SV=1 Length = 592
Score = 160 bits (404), Expect = 7e-38 Identities = 76/120 (63%), Positives = 97/120 (80%) Frame = +3
Query: 264 SNSTSNEVADEIASMQITDRTCTGILASHPQSRDIHIESLSVTFHGHDLIVDSSLEXXXX 443 S+S +++ A+ IA+++++DRTCTG+LASHP SRDIHIESLS+TFHGHDLIVDS LE Sbjct: 32 SSSAADKAANGIAALKLSDRTCTGVLASHPLSRDIHIESLSLTFHGHDLIVDSELELNYG 91
Query: 444 XXXXXXXXXXCGKSTLLASIGCRELPIPDHMDIYHLTREIEATDLTSLQAVVNVDEERVK 623 CGKSTLL +IGCRELPIP+HMDIYHL+ EIEA+D+++LQAV+ DEER+K Sbjct: 92 RRYGLLGLNGCGKSTLLTAIGCRELPIPEHMDIYHLSSEIEASDMSALQAVICCDEERMK 151
>tr|B4FZI2|B4FZI2_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 628
Score = 157 bits (397), Expect = 5e-37 Identities = 76/120 (63%), Positives = 93/120 (77%) Frame = +3
Query: 264 SNSTSNEVADEIASMQITDRTCTGILASHPQSRDIHIESLSVTFHGHDLIVDSSLEXXXX 443 S+S + +A+++++DRTCTG+LASHP SRDIHIESLS+TFHGHDLIVDS LE Sbjct: 68 SSSADAKSIGAVAALKLSDRTCTGVLASHPLSRDIHIESLSLTFHGHDLIVDSELELNYG 127
Query: 444 XXXXXXXXXXCGKSTLLASIGCRELPIPDHMDIYHLTREIEATDLTSLQAVVNVDEERVK 623 CGKSTLL +IGCRELPIP+HMDIYHLT EIEA+D+++LQAVV DEER+K Sbjct: 128 RRYGLLGLNGCGKSTLLTAIGCRELPIPEHMDIYHLTHEIEASDMSALQAVVCCDEERMK 187
>tr|Q5GMM7|Q5GMM7_CAPCH ABC transporter protein (Fragment) OS=Capsicum chinense PE=2 SV=1 Length = 250
Score = 152 bits (383), Expect = 2e-35 Identities = 73/115 (63%), Positives = 90/115 (78%) Frame = +3
Query: 279 NEVADEIASMQITDRTCTGILASHPQSRDIHIESLSVTFHGHDLIVDSSLEXXXXXXXXX 458 + +A+ I ++I+DRTCTG+L SHP SRDI IESLSVTFHGHDLIVDS LE Sbjct: 45 DSLANGIGDLKISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGL 104
Query: 459 XXXXXCGKSTLLASIGCRELPIPDHMDIYHLTREIEATDLTSLQAVVNVDEERVK 623 CGKSTLL +IG RELPIP+HMDI+HL+REIEA+D+TSL+AV+N DEER++ Sbjct: 105 LGLNGCGKSTLLTAIGLRELPIPEHMDIFHLSREIEASDMTSLEAVINCDEERLQ 159
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