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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK952505
Clone id TST38A01NGRL0014_E08
Library
Length 504
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0014_E08. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GTCTTCTCGTGCCGGTAATGCATGCGTGCAAGCCATGAAAGTTCTATTGTGTATTTATGG
TCACCGTCTGGTTATAAACATGATGCACACGCACATCGAGTAACTTCAAAATGTTAACCG
TGTGTGTATGATATAATAGCACAGTTTCTTGTAGTTGCTTTGATTATATATGTATGAGAT
GGCATTAAAGGTATGAGTTATCCTTTCACTGACTATTAACCATGTTAATGGGTTTGTATG
ATGTGTGTATGATATTTTGCAGCCCTATCTATGTCCCAGAGGAATGGTCAACTTCTGGTG
ATAGCTATGCTGCAGGTCCTACTGGATTGGCTATCTGGGCAGTTACCCTCGGCGCTATCT
TGTTGGGTGGTGCCCTCTTAGTGTACAACACCAGTGCCCTTGCTCAATGATTGCTTTTGT
ATGTTAATGAGGTGAATCCTGAATTCTGACACACTATGCGTCTTCCATGTCTCACCTATT
GCCTTGTATATTCTGACAGTCATG
■■Homology search results ■■ -
sp_hit_id P06183
Definition sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum
Align length 49
Score (bit) 60.1
E-value 6.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952505|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0014_E08, 5'
         (504 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloropl...    60   6e-09
sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloropl...    60   6e-09
sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloropl...    60   7e-09
sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloropl...    59   1e-08
sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloropl...    59   2e-08
sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloropl...    59   2e-08
sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloropl...    57   4e-08

>sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1
          Length = 138

 Score = 60.1 bits (144), Expect = 6e-09
 Identities = 30/49 (61%), Positives = 31/49 (63%)
 Frame = +3

Query: 261 SPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 407
           SPIY  +EWS SGD Y  G TGLAIWAVT           VYNTSALAQ
Sbjct: 90  SPIYNTDEWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVYNTSALAQ 138


>sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1
          Length = 138

 Score = 60.1 bits (144), Expect = 6e-09
 Identities = 30/49 (61%), Positives = 31/49 (63%)
 Frame = +3

Query: 261 SPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 407
           SPIY  +EWS SGD Y  G TGLAIWAVT           VYNTSALAQ
Sbjct: 90  SPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSALAQ 138


>sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1
          Length = 141

 Score = 59.7 bits (143), Expect = 7e-09
 Identities = 30/49 (61%), Positives = 31/49 (63%)
 Frame = +3

Query: 261 SPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 407
           SPIY  +EWS SGD Y  G TGLAIWAVT           VYNTSALAQ
Sbjct: 93  SPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 141


>sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1
          Length = 140

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 30/49 (61%), Positives = 30/49 (61%)
 Frame = +3

Query: 261 SPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 407
           SPIY   EWS SGD Y  G TGLAIWAVT           VYNTSALAQ
Sbjct: 92  SPIYNENEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 140


>sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1
          Length = 140

 Score = 58.5 bits (140), Expect = 2e-08
 Identities = 29/49 (59%), Positives = 31/49 (63%)
 Frame = +3

Query: 261 SPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 407
           SPIY  EEW+ +GD YA G TGL IWAVT           VYNTSALAQ
Sbjct: 92  SPIYNEEEWAPTGDVYAGGTTGLLIWAVTLAGLLAGGALLVYNTSALAQ 140


>sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Hordeum vulgare GN=PSBR PE=3 SV=1
          Length = 138

 Score = 58.5 bits (140), Expect = 2e-08
 Identities = 28/48 (58%), Positives = 30/48 (62%)
 Frame = +3

Query: 261 SPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALA 404
           SPIY PEEWS SGD Y  G TGL +WAVT           VY+TSALA
Sbjct: 90  SPIYTPEEWSPSGDVYVGGKTGLFLWAVTLAGILLGGALLVYSTSALA 137


>sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1
          Length = 136

 Score = 57.4 bits (137), Expect = 4e-08
 Identities = 28/49 (57%), Positives = 31/49 (63%)
 Frame = +3

Query: 261 SPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 407
           SPIY  ++WS SGD Y  G TGLAIWAVT           V+NTSALAQ
Sbjct: 88  SPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNTSALAQ 136
tr_hit_id Q6XW17
Definition tr|Q6XW17|Q6XW17_WHEAT Photosystem II polypeptide (Fragment) OS=Triticum aestivum
Align length 48
Score (bit) 63.5
E-value 5.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952505|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0014_E08, 5'
         (504 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6XW17|Q6XW17_WHEAT Photosystem II polypeptide (Fragment) OS=...    64   5e-09
tr|A4ZGB4|A4ZGB4_AGATE Chloroplast photosystem II 10 kDa protein...    62   1e-08
tr|Q6ZBV1|Q6ZBV1_ORYSJ Os08g0200300 protein OS=Oryza sativa subs...    61   3e-08
tr|P93443|P93443_ORYSA Photosystem II 10 kDa polypeptide OS=Oryz...    61   3e-08
tr|A6MZV5|A6MZV5_ORYSI Photosystem ii 10 kDa polypeptide (Fragme...    61   3e-08
tr|A3BQJ5|A3BQJ5_ORYSJ Putative uncharacterized protein OS=Oryza...    61   3e-08
tr|A2YS77|A2YS77_ORYSI Putative uncharacterized protein OS=Oryza...    61   3e-08
tr|A1Z271|A1Z271_BRAJU PSII 10Kd peptide OS=Brassica juncea PE=2...    61   3e-08
tr|A0S601|A0S601_9POAL PS II 10 kDa protein OS=Phyllostachys edu...    60   4e-08
tr|A8VIE2|A8VIE2_PROJU Chloroplast photosystem II PsbR OS=Prosop...    60   6e-08
tr|A5AWT3|A5AWT3_VITVI Putative uncharacterized protein (Chromos...    60   6e-08
tr|Q84XP6|Q84XP6_BRARP Photosystem II 10kDa polypeptide (Fragmen...    60   8e-08
tr|Q6ZF71|Q6ZF71_ORYSJ Putative Photosystem II 10 kDa polypeptid...    60   8e-08
tr|Q6V7X5|Q6V7X5_TRIPR 10 kDa photosystem II polypeptide OS=Trif...    60   8e-08
tr|B8B7B0|B8B7B0_ORYSI Putative uncharacterized protein OS=Oryza...    60   8e-08
tr|A3BGK2|A3BGK2_ORYSJ Putative uncharacterized protein OS=Oryza...    60   8e-08
tr|A1YN01|A1YN01_BRACM Photosystem II 10kDa polytpeptide OS=Bras...    60   8e-08
tr|Q1H8R2|Q1H8R2_CHERU Photosystem II 10 kDa polypeptide, chloro...    59   1e-07
tr|B5X5G7|B5X5G7_SALSA Photosystem II 10 kDa polypeptide, chloro...    59   1e-07
tr|Q8GV53|Q8GV53_9LILI Photosystem II 10 kDa protein OS=Xerophyt...    59   1e-07
tr|Q0WWI7|Q0WWI7_ARATH PSII-R protein OS=Arabidopsis thaliana GN...    59   1e-07
tr|A1YMZ6|A1YMZ6_BRACM Chloroplast photosystem II 10 kDa polypep...    59   1e-07
tr|Q8H4P7|Q8H4P7_ORYSJ Os07g0147500 protein OS=Oryza sativa subs...    58   2e-07
tr|B8B7A9|B8B7A9_ORYSI Putative uncharacterized protein OS=Oryza...    58   2e-07
tr|A9PIM0|A9PIM0_POPJC Putative uncharacterized protein OS=Popul...    58   3e-07
tr|A9PHU8|A9PHU8_POPTR Putative uncharacterized protein OS=Popul...    57   4e-07
tr|A9PJW8|A9PJW8_POPJC Putative uncharacterized protein OS=Popul...    57   6e-07
tr|A9PH94|A9PH94_POPTR Putative uncharacterized protein OS=Popul...    57   6e-07
tr|A9PAP8|A9PAP8_POPTR Putative uncharacterized protein OS=Popul...    57   6e-07
tr|Q2PXN6|Q2PXN6_ARAHY Chloroplast photosystem II 10 kDa protein...    56   8e-07

>tr|Q6XW17|Q6XW17_WHEAT Photosystem II polypeptide (Fragment)
           OS=Triticum aestivum PE=2 SV=1
          Length = 99

 Score = 63.5 bits (153), Expect = 5e-09
 Identities = 31/48 (64%), Positives = 31/48 (64%)
 Frame = +3

Query: 261 SPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALA 404
           SPIY PEEWS SGD YA G TGL IWAVT           VYNTSALA
Sbjct: 51  SPIYTPEEWSESGDRYAGGTTGLLIWAVTLAGLLGGGVLLVYNTSALA 98


>tr|A4ZGB4|A4ZGB4_AGATE Chloroplast photosystem II 10 kDa protein
           OS=Agave tequilana PE=2 SV=1
          Length = 144

 Score = 62.4 bits (150), Expect = 1e-08
 Identities = 30/49 (61%), Positives = 31/49 (63%)
 Frame = +3

Query: 261 SPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 407
           SPIY PEEWS SGD Y  G TGL IWA+T           VYNTSALAQ
Sbjct: 96  SPIYSPEEWSPSGDVYVGGTTGLLIWAITLAGLLAGGALLVYNTSALAQ 144


>tr|Q6ZBV1|Q6ZBV1_ORYSJ Os08g0200300 protein OS=Oryza sativa subsp.
           japonica GN=P0556A11.19 PE=2 SV=1
          Length = 130

 Score = 60.8 bits (146), Expect = 3e-08
 Identities = 29/48 (60%), Positives = 31/48 (64%)
 Frame = +3

Query: 261 SPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALA 404
           SPIY PEEWS +GD+Y  G TGL IWAVT           VYNTSALA
Sbjct: 82  SPIYSPEEWSPTGDTYVGGTTGLLIWAVTLAGLLGGGALLVYNTSALA 129


>tr|P93443|P93443_ORYSA Photosystem II 10 kDa polypeptide OS=Oryza
           sativa PE=2 SV=1
          Length = 126

 Score = 60.8 bits (146), Expect = 3e-08
 Identities = 29/48 (60%), Positives = 31/48 (64%)
 Frame = +3

Query: 261 SPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALA 404
           SPIY PEEWS +GD+Y  G TGL IWAVT           VYNTSALA
Sbjct: 78  SPIYSPEEWSPTGDTYVGGTTGLLIWAVTLAGLLGGGALLVYNTSALA 125


>tr|A6MZV5|A6MZV5_ORYSI Photosystem ii 10 kDa polypeptide (Fragment)
           OS=Oryza sativa subsp. indica PE=2 SV=1
          Length = 128

 Score = 60.8 bits (146), Expect = 3e-08
 Identities = 29/48 (60%), Positives = 31/48 (64%)
 Frame = +3

Query: 261 SPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALA 404
           SPIY PEEWS +GD+Y  G TGL IWAVT           VYNTSALA
Sbjct: 80  SPIYSPEEWSPTGDTYVGGTTGLLIWAVTLAGLLGGGALLVYNTSALA 127


>tr|A3BQJ5|A3BQJ5_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_025317 PE=4 SV=1
          Length = 704

 Score = 60.8 bits (146), Expect = 3e-08
 Identities = 29/48 (60%), Positives = 31/48 (64%)
 Frame = +3

Query: 261 SPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALA 404
           SPIY PEEWS +GD+Y  G TGL IWAVT           VYNTSALA
Sbjct: 656 SPIYSPEEWSPTGDTYVGGTTGLLIWAVTLAGLLGGGALLVYNTSALA 703


>tr|A2YS77|A2YS77_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_28175 PE=4 SV=1
          Length = 130

 Score = 60.8 bits (146), Expect = 3e-08
 Identities = 29/48 (60%), Positives = 31/48 (64%)
 Frame = +3

Query: 261 SPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALA 404
           SPIY PEEWS +GD+Y  G TGL IWAVT           VYNTSALA
Sbjct: 82  SPIYSPEEWSPTGDTYVGGTTGLLIWAVTLAGLLGGGALLVYNTSALA 129


>tr|A1Z271|A1Z271_BRAJU PSII 10Kd peptide OS=Brassica juncea PE=2
           SV=1
          Length = 141

 Score = 60.8 bits (146), Expect = 3e-08
 Identities = 31/49 (63%), Positives = 31/49 (63%)
 Frame = +3

Query: 261 SPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 407
           SPIY  EEWS SGD Y  G TGLAIWAVT           VYNTSALAQ
Sbjct: 93  SPIYNEEEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 141


>tr|A0S601|A0S601_9POAL PS II 10 kDa protein OS=Phyllostachys edulis
           PE=2 SV=1
          Length = 130

 Score = 60.5 bits (145), Expect = 4e-08
 Identities = 29/48 (60%), Positives = 30/48 (62%)
 Frame = +3

Query: 261 SPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALA 404
           SPIY PEEWS SGD Y  G TGL IWA+T           VYNTSALA
Sbjct: 82  SPIYSPEEWSPSGDVYVGGTTGLLIWAITLAGLLGGGALLVYNTSALA 129


>tr|A8VIE2|A8VIE2_PROJU Chloroplast photosystem II PsbR OS=Prosopsis
           juliflora GN=PsbR PE=2 SV=1
          Length = 139

 Score = 60.1 bits (144), Expect = 6e-08
 Identities = 30/49 (61%), Positives = 31/49 (63%)
 Frame = +3

Query: 261 SPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 407
           SPIY  E+WS SGD Y  G TGLAIWAVT           VYNTSALAQ
Sbjct: 91  SPIYNTEDWSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ 139