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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK952531
Clone id TST38A01NGRL0014_F13
Library
Length 614
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0014_F13. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GTGAAATTCTGCGAGAGCGAGAGAGATGGCGCAACGTCTGCAGACGGTTGGGAGTCATAT
AAGGCTCTGGGCTTCTTCCTCCTCTCCCTCCTGCCGTGCTTGTCAAAAGCGGGGTCTCCA
CATCCCCCCTGGTGAACGTGAGAAAGCTCTCTTAGAAGAGGATCCTGCTTTAAAACATTA
CAAATCAACCAAGGGAACTGCTCAGAAAGTAAAGCTGTTTGGGGATGTCCTTGTTATCAT
CGTGAGTGCAGGGTGCTGCTATCAGGTTTATGATGTGACCAAAAAGCGAAGAGCTGAAAG
GCTAGGACAAACAGAAAGCTAAGCCGGCATTTCTTGATAAAGAGAATTCTCTTTAAGCCT
GCAAGTTGTTCTCTGTAATTTGCCCGCTGCTAAAGAAATAGACATAATAATTGGAATATG
TGTGCACTTTCTCTTCTTCTTATGATTAGCCAAATTCATGCTGTGCTCTGGAAAGCAATA
GTTAATGCTTTGATACTTAAACTTGAAATATTAGTGTAAGTCATTATGATCAAGTTAGCG
AAGGCTAGGACTAAAACCGTAGGTTTTAGTAAAATGTGGCGCTCTGTTCTTTTGAAAAAA
AAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P78859
Definition sp|P78859|ISA1_SCHPO Iron sulfur assembly protein 1 OS=Schizosaccharomyces pombe
Align length 47
Score (bit) 32.0
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952531|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0014_F13, 5'
         (594 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P78859|ISA1_SCHPO Iron sulfur assembly protein 1 OS=Schizosac...    32   2.4  
sp|Q7TMY8|HUWE1_MOUSE E3 ubiquitin-protein ligase HUWE1 OS=Mus m...    24   9.9  

>sp|P78859|ISA1_SCHPO Iron sulfur assembly protein 1
           OS=Schizosaccharomyces pombe GN=isa1 PE=2 SV=1
          Length = 190

 Score = 32.0 bits (71), Expect = 2.4
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = -3

Query: 145 FLTFTRGDVETPLLTSTAGGRGGRSPEPYMTPNRLQTLRHLSRSRRI 5
           +L  TR DVETP L  +A G G  +P+P +T   + + R + R   I
Sbjct: 38  YLGRTRLDVETPSLKPSAAGSGSTAPKP-VTEREIASTRFMPRKNVI 83


>sp|Q7TMY8|HUWE1_MOUSE E3 ubiquitin-protein ligase HUWE1 OS=Mus
            musculus GN=Huwe1 PE=1 SV=4
          Length = 4377

 Score = 24.3 bits (51), Expect(2) = 9.9
 Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -2

Query: 209  LSEQFPWLICNVLKQDPLLRE-LSHVHQGGCGDPAFDKHGRRERRK 75
            ++E    ++C++L+ +P++RE LS   +G  G+    +     RR+
Sbjct: 1269 MAESMLAILCHILRGEPVIRERLSKEKEGSRGEEEAGQEEGGSRRE 1314



 Score = 23.9 bits (50), Expect(2) = 9.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 369  TTCRLKENSLYQEMPA*LSVCPSLSALRFLVTS 271
            TT     +SL  ++P  +   P  SALRFLV +
Sbjct: 1213 TTVLESPHSLPAKLPGGVQSFPQFSALRFLVVT 1245
tr_hit_id Q3E870
Definition tr|Q3E870|Q3E870_ARATH Uncharacterized protein At5g62575.2 (At5g62575) OS=Arabidopsis thaliana
Align length 76
Score (bit) 82.8
E-value 1.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952531|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0014_F13, 5'
         (594 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q3E870|Q3E870_ARATH Uncharacterized protein At5g62575.2 (At5g...    83   1e-14
tr|A9PJS2|A9PJS2_POPJC Putative uncharacterized protein OS=Popul...    83   1e-14
tr|A9P9R2|A9P9R2_POPTR Putative uncharacterized protein OS=Popul...    83   1e-14
tr|Q8LBU0|Q8LBU0_ARATH Putative uncharacterized protein OS=Arabi...    81   5e-14
tr|A9NLG7|A9NLG7_PICSI Putative uncharacterized protein OS=Picea...    81   5e-14
tr|A7PD60|A7PD60_VITVI Chromosome chr17 scaffold_12, whole genom...    73   1e-11
tr|Q9C5E8|Q9C5E8_ARATH Putative uncharacterized protein At3g4783...    73   1e-11
tr|Q9STT0|Q9STT0_ARATH Putative uncharacterized protein T23J7.16...    68   3e-10
tr|B6T2U7|B6T2U7_MAIZE Putative uncharacterized protein OS=Zea m...    62   3e-08
tr|B6T2I9|B6T2I9_MAIZE Putative uncharacterized protein OS=Zea m...    62   3e-08
tr|B6TM38|B6TM38_MAIZE Putative uncharacterized protein OS=Zea m...    56   1e-06
tr|B4FHU9|B4FHU9_MAIZE Putative uncharacterized protein OS=Zea m...    56   1e-06
tr|Q6H611|Q6H611_ORYSJ Os09g0382500 protein OS=Oryza sativa subs...    56   2e-06
tr|A2XWZ5|A2XWZ5_ORYSI Putative uncharacterized protein OS=Oryza...    56   2e-06
tr|A3BYE2|A3BYE2_ORYSJ Putative uncharacterized protein OS=Oryza...    44   0.005
tr|Q2UNY7|Q2UNY7_ASPOR Predicted protein OS=Aspergillus oryzae G...    37   1.1  
tr|A2AU14|A2AU14_MOUSE Regulator of telomere elongation helicase...    34   7.2  

>tr|Q3E870|Q3E870_ARATH Uncharacterized protein At5g62575.2
           (At5g62575) OS=Arabidopsis thaliana GN=At5g62575 PE=4
           SV=1
          Length = 100

 Score = 82.8 bits (203), Expect = 1e-14
 Identities = 37/76 (48%), Positives = 51/76 (67%)
 Frame = +2

Query: 44  TVGSHIRLWASSSSPSCRACQKRGLHIPPGEREKALLEEDPALKHYKSTKGTAQKVKLFG 223
           ++ SH+R  +S  +    +  +RG HI PG REKALL ED ALK +KS K +  K+K  G
Sbjct: 9   SISSHLRSSSSQKTGDALSISRRGFHIEPGTREKALLAEDSALKRFKSHKKSVHKLKRIG 68

Query: 224 DVLVIIVSAGCCYQVY 271
           DVL ++V AGCCY++Y
Sbjct: 69  DVLTVVVVAGCCYEIY 84


>tr|A9PJS2|A9PJS2_POPJC Putative uncharacterized protein OS=Populus
           jackii PE=4 SV=1
          Length = 100

 Score = 82.8 bits (203), Expect = 1e-14
 Identities = 41/98 (41%), Positives = 59/98 (60%)
 Frame = +2

Query: 26  MAQRLQTVGSHIRLWASSSSPSCRACQKRGLHIPPGEREKALLEEDPALKHYKSTKGTAQ 205
           + +   T+ SH R  + S +    +  +RG H+ PG RE+ALL EDP+LK +KS K +  
Sbjct: 4   LLKNYSTITSHYR--SQSQTQGAFSLSRRGFHVEPGPREQALLAEDPSLKRFKSHKKSVW 61

Query: 206 KVKLFGDVLVIIVSAGCCYQVYDVTKKRRAERLGQTES 319
           ++K FGDVL ++V AGCCY++Y  T  R   R    ES
Sbjct: 62  RLKRFGDVLTLVVVAGCCYEIYVKTVMREEARKQAKES 99


>tr|A9P9R2|A9P9R2_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=4 SV=1
          Length = 100

 Score = 82.8 bits (203), Expect = 1e-14
 Identities = 41/98 (41%), Positives = 59/98 (60%)
 Frame = +2

Query: 26  MAQRLQTVGSHIRLWASSSSPSCRACQKRGLHIPPGEREKALLEEDPALKHYKSTKGTAQ 205
           + +   T+ SH R  + S +    +  +RG H+ PG RE+ALL EDP+LK +KS K +  
Sbjct: 4   LLKNYSTITSHYR--SQSQTQGAFSLSRRGFHVEPGPREQALLAEDPSLKRFKSHKKSVW 61

Query: 206 KVKLFGDVLVIIVSAGCCYQVYDVTKKRRAERLGQTES 319
           ++K FGDVL ++V AGCCY++Y  T  R   R    ES
Sbjct: 62  RLKRFGDVLTLVVVAGCCYEIYVKTVMREEARKQAKES 99


>tr|Q8LBU0|Q8LBU0_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=4 SV=1
          Length = 99

 Score = 80.9 bits (198), Expect = 5e-14
 Identities = 38/76 (50%), Positives = 52/76 (68%)
 Frame = +2

Query: 44  TVGSHIRLWASSSSPSCRACQKRGLHIPPGEREKALLEEDPALKHYKSTKGTAQKVKLFG 223
           ++ SH+R  +SS +    +  +RG HI PG REKALL ED ALK +KS K +  K+K  G
Sbjct: 9   SISSHLRS-SSSQTGDALSISRRGFHIEPGTREKALLAEDSALKRFKSHKKSVHKLKRIG 67

Query: 224 DVLVIIVSAGCCYQVY 271
           DVL ++V AGCCY++Y
Sbjct: 68  DVLTVVVVAGCCYEIY 83


>tr|A9NLG7|A9NLG7_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 102

 Score = 80.9 bits (198), Expect = 5e-14
 Identities = 37/66 (56%), Positives = 50/66 (75%)
 Frame = +2

Query: 104 QKRGLHIPPGEREKALLEEDPALKHYKSTKGTAQKVKLFGDVLVIIVSAGCCYQVYDVTK 283
           Q RG+HI PG REKALLEEDPALK +KS K + ++++   D+L I+V +GCCY++Y  T 
Sbjct: 29  QVRGIHIEPGAREKALLEEDPALKKFKSYKKSIRRMQTARDILTIVVISGCCYEIYYRTM 88

Query: 284 KRRAER 301
            R+AER
Sbjct: 89  MRKAER 94


>tr|A7PD60|A7PD60_VITVI Chromosome chr17 scaffold_12, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00016151001
           PE=4 SV=1
          Length = 102

 Score = 73.2 bits (178), Expect = 1e-11
 Identities = 35/76 (46%), Positives = 49/76 (64%)
 Frame = +2

Query: 44  TVGSHIRLWASSSSPSCRACQKRGLHIPPGEREKALLEEDPALKHYKSTKGTAQKVKLFG 223
           T  SH R  +  +  S  +  +RG H+ PG REKALL ++P+LK +KS K    ++K  G
Sbjct: 9   TALSHFRSHSQKTEDSF-SLSRRGFHVEPGPREKALLADNPSLKRFKSHKRNVWRLKRVG 67

Query: 224 DVLVIIVSAGCCYQVY 271
           DVL I+V AGCCY++Y
Sbjct: 68  DVLTIVVVAGCCYEIY 83


>tr|Q9C5E8|Q9C5E8_ARATH Putative uncharacterized protein At3g47833
           (Putative uncharacterized protein) OS=Arabidopsis
           thaliana GN=At3g47833 PE=2 SV=1
          Length = 93

 Score = 72.8 bits (177), Expect = 1e-11
 Identities = 34/85 (40%), Positives = 53/85 (62%)
 Frame = +2

Query: 44  TVGSHIRLWASSSSPSCRACQKRGLHIPPGEREKALLEEDPALKHYKSTKGTAQKVKLFG 223
           ++ SH+R  +S  +    A  +RG H+  G REKALL ED +L+ +KS K    ++K  G
Sbjct: 8   SISSHLRS-SSQKTDGALAQSRRGFHVELGAREKALLAEDASLRRFKSHKKGVHRLKRIG 66

Query: 224 DVLVIIVSAGCCYQVYDVTKKRRAE 298
           DVL ++V AGCCY++Y    ++ A+
Sbjct: 67  DVLTVVVVAGCCYEIYARVMRKEAQ 91


>tr|Q9STT0|Q9STT0_ARATH Putative uncharacterized protein T23J7.160
           OS=Arabidopsis thaliana GN=T23J7.160 PE=4 SV=1
          Length = 334

 Score = 68.2 bits (165), Expect = 3e-10
 Identities = 30/67 (44%), Positives = 44/67 (65%)
 Frame = +2

Query: 98  ACQKRGLHIPPGEREKALLEEDPALKHYKSTKGTAQKVKLFGDVLVIIVSAGCCYQVYDV 277
           A  +RG H+  G REKALL ED +L+ +KS K    ++K  GDVL ++V AGCCY++Y  
Sbjct: 266 AQSRRGFHVELGAREKALLAEDASLRRFKSHKKGVHRLKRIGDVLTVVVVAGCCYEIYAR 325

Query: 278 TKKRRAE 298
             ++ A+
Sbjct: 326 VMRKEAQ 332


>tr|B6T2U7|B6T2U7_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 89

 Score = 61.6 bits (148), Expect = 3e-08
 Identities = 34/81 (41%), Positives = 46/81 (56%)
 Frame = +2

Query: 26  MAQRLQTVGSHIRLWASSSSPSCRACQKRGLHIPPGEREKALLEEDPALKHYKSTKGTAQ 205
           MAQ +       RL ++  SP       RG H+  G REKALLEED ALK +KS K + +
Sbjct: 1   MAQPVFLSSLRSRLCSAPPSPHHHLQPSRGYHVELGAREKALLEEDVALKRFKSYKNSVK 60

Query: 206 KVKLFGDVLVIIVSAGCCYQV 268
           +V   G+VL + V  GC Y++
Sbjct: 61  QVSKIGNVLTLAVVFGCSYEL 81


>tr|B6T2I9|B6T2I9_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 89

 Score = 61.6 bits (148), Expect = 3e-08
 Identities = 34/81 (41%), Positives = 46/81 (56%)
 Frame = +2

Query: 26  MAQRLQTVGSHIRLWASSSSPSCRACQKRGLHIPPGEREKALLEEDPALKHYKSTKGTAQ 205
           MAQ +       RL ++  SP       RG H+  G REKALLEED ALK +KS K + +
Sbjct: 1   MAQPVFLSSLRSRLCSAPPSPHHHLQPSRGYHVELGAREKALLEEDVALKRFKSYKNSVK 60

Query: 206 KVKLFGDVLVIIVSAGCCYQV 268
           +V   G+VL + V  GC Y++
Sbjct: 61  QVSKIGNVLTLAVVFGCSYEL 81