DK952576 |
Clone id |
TST38A01NGRL0014_H12 |
Library |
TST38 |
Length |
546 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0014_H12. 5' end sequence. |
Accession |
DK952576 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL481Contig1 |
Sequence |
GACTGGACTTGGAGGATTCTGGTGGACATGAATGTGAAGGGAGGCAGGTTTGAAGAAGCA CAAAAGATTACGAAAGAAATGGTGGGTCGTGGTCGATCAATTGATTTGCCAGTTTATATG AATCTTATCCAGGGCTATGGAAAGTCTAAAGATTTCAAGAGTGTGCTTTCTGTGATGAAT GACATTAAAGCAGCTAATGTGCCATTTGACCACATGTTGGCTGGGGCCCTGCTCAGTGCG CTCGTGTTGTGTGAAGAGGCAGGATCTGAAGAAAAGTTACCCCTGGTTGAAGAAATTGGT TTAGTGTACCCAAAATTGAAAGCAGTTATTGAGAATTTATATAAAGAAGAGAGTATTAGC ACAGCAAAGGTGAAAGAAGACATTCGTGCCATGTTGAACGGTGCTGCAGAGGACTGCAGG AGGCCTTTTTGCAATTTGTTATTGGATCTATGCTGGATGAAGCAGTCAGCTGAGCAGGCA CAGGAGCTTCTAGGTATTGCGATATCGTTTGGTATTTACTCAGAGTTGCAGATACGGACC CCTATG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9LS25 |
Definition |
sp|Q9LS25|PP420_ARATH Pentatricopeptide repeat-containing protein At5g46580, chloroplastic OS=Arabidopsis thaliana |
Align length |
180 |
Score (bit) |
86.7 |
E-value |
7.0e-17 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK952576|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0014_H12, 5' (546 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q9LS25|PP420_ARATH Pentatricopeptide repeat-containing protei... 87 7e-17 sp|Q8GWE0|PP314_ARATH Pentatricopeptide repeat-containing protei... 73 8e-13 sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protei... 46 1e-04 sp|Q9SY69|PPR29_ARATH Pentatricopeptide repeat-containing protei... 45 3e-04 sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protei... 45 3e-04 sp|P0C896|PP209_ARATH Pentatricopeptide repeat-containing protei... 44 5e-04 sp|O04647|PP399_ARATH Pentatricopeptide repeat-containing protei... 44 7e-04 sp|Q9FFE3|PP388_ARATH Pentatricopeptide repeat-containing protei... 44 7e-04 sp|Q9FMQ1|PP376_ARATH Pentatricopeptide repeat-containing protei... 43 0.001 sp|Q6NKW7|PP164_ARATH Pentatricopeptide repeat-containing protei... 42 0.001 sp|Q9SUD8|PP340_ARATH Pentatricopeptide repeat-containing protei... 42 0.003 sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protei... 41 0.003 sp|O81028|PP171_ARATH Pentatricopeptide repeat-containing protei... 41 0.003 sp|Q4V389|PPR55_ARATH Pentatricopeptide repeat-containing protei... 41 0.004 sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protei... 41 0.004 sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containi... 40 0.006 sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protei... 40 0.006 sp|P0C7R4|PP110_ARATH Pentatricopeptide repeat-containing protei... 40 0.006 sp|Q8GYP6|PPR49_ARATH Pentatricopeptide repeat-containing protei... 40 0.007 sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protei... 40 0.007 sp|Q0WVV0|PPR31_ARATH Pentatricopeptide repeat-containing protei... 40 0.010 sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protei... 40 0.010 sp|Q9LVD3|PP434_ARATH Pentatricopeptide repeat-containing protei... 40 0.010 sp|Q9C9I6|PP116_ARATH Pentatricopeptide repeat-containing protei... 40 0.010 sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protei... 39 0.013 sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protei... 39 0.013 sp|Q9SSF9|PP123_ARATH Pentatricopeptide repeat-containing protei... 39 0.013 sp|Q9CAA5|PP109_ARATH Pentatricopeptide repeat-containing protei... 39 0.013 sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containi... 39 0.017 sp|Q66GP4|PP379_ARATH Pentatricopeptide repeat-containing protei... 39 0.017
>sp|Q9LS25|PP420_ARATH Pentatricopeptide repeat-containing protein At5g46580, chloroplastic OS=Arabidopsis thaliana GN=At5g46580 PE=2 SV=1 Length = 711
Score = 86.7 bits (213), Expect = 7e-17 Identities = 54/180 (30%), Positives = 90/180 (50%) Frame = +1
Query: 1 DWTWRILVDMNVKGGRFEEAQKITKEMVGRGRSIDLPVYMNLIQGYGKSKDFKSVLSVMN 180 ++++ ++++ GG+ E+A ++ +EM+ G +++ L+Q GK+K V+ V + Sbjct: 432 NFSYTAMLNIYGSGGKAEKAMELFEEMLKAGVQVNVMGCTCLVQCLGKAKRIDDVVYVFD 491
Query: 181 DIKAANVPFDHMLAGALLSALVLCEEAGSEEKLPLVEEIGLVYPKLKAVIENLYKEESIS 360 V D L G LLS + LCE + EK+ E K NL +E Sbjct: 492 LSIKRGVKPDDRLCGCLLSVMALCESSEDAEKVMACLERA---NKKLVTFVNLIVDEKTE 548
Query: 361 TAKVKEDIRAMLNGAAEDCRRPFCNLLLDLCWMKQSAEQAQELLGIAISFGIYSELQIRT 540 VKE+ + ++N + RRPFCN L+D+C E+A ELL + FG+Y L +T Sbjct: 549 YETVKEEFKLVINATQVEARRPFCNCLIDICRGNNRHERAHELLYLGTLFGLYPGLHNKT 608
Score = 35.4 bits (80), Expect = 0.18 Identities = 22/89 (24%), Positives = 45/89 (50%) Frame = +1
Query: 10 WRILVDMNVKGGRFEEAQKITKEMVGRGRSIDLPVYMNLIQGYGKSKDFKSVLSVMNDIK 189 + L++ + G+ A+ + EM+ G + + L++ YGK++ + L + ++K Sbjct: 329 YNTLLEAMGRAGKPGLARSLFNEMLEAGLTPNEKTLTALVKIYGKARWARDALQLWEEMK 388
Query: 190 AANVPFDHMLAGALLSALVLCEEAGSEEK 276 A P D +L LL+ +C + G EE+ Sbjct: 389 AKKWPMDFILYNTLLN---MCADIGLEEE 414
>sp|Q8GWE0|PP314_ARATH Pentatricopeptide repeat-containing protein At4g16390, chloroplastic OS=Arabidopsis thaliana GN=P67 PE=1 SV=2 Length = 688
Score = 73.2 bits (178), Expect = 8e-13 Identities = 45/179 (25%), Positives = 86/179 (48%) Frame = +1
Query: 4 WTWRILVDMNVKGGRFEEAQKITKEMVGRGRSIDLPVYMNLIQGYGKSKDFKSVLSVMND 183 WT+ L+ + GR +A+ ++ G L V ++IQ YGK+K V+ + Sbjct: 408 WTFSSLITVYACSGRVSKAEAALLQIREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQ 467
Query: 184 IKAANVPFDHMLAGALLSALVLCEEAGSEEKLPLVEEIGLVYPKLKAVIENLYKEESIST 363 + + D G LL+ + + SEE L+ + PKL V++ L +E++ Sbjct: 468 VLELGITPDDRFCGCLLNVMT---QTPSEEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEE 524
Query: 364 AKVKEDIRAMLNGAAEDCRRPFCNLLLDLCWMKQSAEQAQELLGIAISFGIYSELQIRT 540 K++ +++ D ++ + N L+DLC E+A E+L + + + IY+ LQ ++ Sbjct: 525 GVFKKEASELIDSIGSDVKKAYLNCLIDLCVNLNKLERACEILQLGLEYDIYTGLQSKS 583
Score = 30.4 bits (67), Expect = 5.9 Identities = 17/73 (23%), Positives = 37/73 (50%) Frame = +1
Query: 19 LVDMNVKGGRFEEAQKITKEMVGRGRSIDLPVYMNLIQGYGKSKDFKSVLSVMNDIKAAN 198 L+D + R +A+ I K+++ G + + Y L++ YG+++ L++ ++K Sbjct: 307 LIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMKEKG 366
Query: 199 VPFDHMLAGALLS 237 + +L LLS Sbjct: 367 LSLTVILYNTLLS 379
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640, mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2 SV=1 Length = 504
Score = 46.2 bits (108), Expect = 1e-04 Identities = 40/177 (22%), Positives = 81/177 (45%), Gaps = 3/177 (1%) Frame = +1
Query: 7 TWRILVDMNVKGGRFEEAQKITKEMVGRGRSIDLPVYMNLIQGYGKSKDFKSVLSVMNDI 186 T+ L++ +G R +A + +MVG G ++ +Y +I G KSK + L ++N + Sbjct: 153 TFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRM 212
Query: 187 KAANVPFDHMLAGALLSALVLCEEAGSEEKLPLVEEIGLVYPKL---KAVIENLYKEESI 357 + + D + +L+S L ++ +YP + A+I+ KE + Sbjct: 213 EKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRV 272
Query: 358 STAKVKEDIRAMLNGAAEDCRRPFCNLLLDLCWMKQSAEQAQELLGIAISFGIYSEL 528 S A +E M+ + + + L+ LC M ++A+E+ G +S G + ++ Sbjct: 273 SEA--EEFYEEMIRRSLDPDIVTYSLLIYGLC-MYSRLDEAEEMFGFMVSKGCFPDV 326
Score = 33.9 bits (76), Expect = 0.53 Identities = 17/44 (38%), Positives = 25/44 (56%) Frame = +1
Query: 4 WTWRILVDMNVKGGRFEEAQKITKEMVGRGRSIDLPVYMNLIQG 135 +T+ L+D VK GR EA++ +EM+ R D+ Y LI G Sbjct: 257 FTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYG 300
>sp|Q9SY69|PPR29_ARATH Pentatricopeptide repeat-containing protein At1g10270 OS=Arabidopsis thaliana GN=GRP23 PE=2 SV=1 Length = 913
Score = 44.7 bits (104), Expect = 3e-04 Identities = 22/68 (32%), Positives = 38/68 (55%) Frame = +1
Query: 7 TWRILVDMNVKGGRFEEAQKITKEMVGRGRSIDLPVYMNLIQGYGKSKDFKSVLSVMNDI 186 T+R L V+ GR +A + +EM+ +G++ D VY NLI+GY DF + +++ Sbjct: 254 TYRHLTKGLVQAGRIGDAASLLREMLSKGQAADSTVYNNLIRGYLDLGDFDKAVEFFDEL 313
Query: 187 KAANVPFD 210 K+ +D Sbjct: 314 KSKCTVYD 321
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1 Length = 915
Score = 44.7 bits (104), Expect = 3e-04 Identities = 43/181 (23%), Positives = 80/181 (44%), Gaps = 10/181 (5%) Frame = +1
Query: 4 WTWRILVDMNVKGGRFEEAQKITKEMVGRGRSIDLPVYMNLIQGYGKSKDFKSVLSVMND 183 +T+ +V+ K G EEA + ++V G D Y +LI GY + KD S V N+ Sbjct: 219 YTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNE 278
Query: 184 I-----KAANVPFDHMLAGALLS-----ALVLCEEAGSEEKLPLVEEIGLVYPKLKAVIE 333 + + V + H++ G ++ A+ L + +E P V ++ +K++ Sbjct: 279 MPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVL---IKSLCG 335
Query: 334 NLYKEESISTAKVKEDIRAMLNGAAEDCRRPFCNLLLDLCWMKQSAEQAQELLGIAISFG 513 + K E+++ K E+ N +L+D + E+A+ELLG + G Sbjct: 336 SERKSEALNLVKEMEETGIKPNIHT-------YTVLIDSLCSQCKFEKARELLGQMLEKG 388
Query: 514 I 516 + Sbjct: 389 L 389
Score = 32.0 bits (71), Expect = 2.0 Identities = 24/97 (24%), Positives = 46/97 (47%) Frame = +1
Query: 4 WTWRILVDMNVKGGRFEEAQKITKEMVGRGRSIDLPVYMNLIQGYGKSKDFKSVLSVMND 183 WT+ ++D K R EEA + + +G + ++ +Y LI GY K+ ++ Sbjct: 498 WTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEK 557
Query: 184 IKAANVPFDHMLAGALLSALVLCEEAGSEEKLPLVEE 294 + + N + + AL+ LC + G ++ L+EE Sbjct: 558 MLSKNCLPNSLTFNALIHG--LCAD-GKLKEATLLEE 591
Score = 30.4 bits (67), Expect = 5.9 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 3/64 (4%) Frame = +1
Query: 7 TWRILVDMNVKGGRFEEAQKITKEMVGRGRSIDLPVYMNLIQGY---GKSKDFKSVLSVM 177 T+ +L+D +FE+A+++ +M+ +G ++ Y LI GY G +D V+ +M Sbjct: 360 TYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELM 419
Query: 178 NDIK 189 K Sbjct: 420 ESRK 423
Score = 30.4 bits (67), Expect = 5.9 Identities = 21/97 (21%), Positives = 44/97 (45%) Frame = +1
Query: 7 TWRILVDMNVKGGRFEEAQKITKEMVGRGRSIDLPVYMNLIQGYGKSKDFKSVLSVMNDI 186 T+ L+D + G F+ A ++ M RG D Y ++I KSK + + + + Sbjct: 464 TYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSL 523
Query: 187 KAANVPFDHMLAGALLSALVLCEEAGSEEKLPLVEEI 297 + V + ++ AL+ C+ +E ++E++ Sbjct: 524 EQKGVNPNVVMYTALIDG--YCKAGKVDEAHLMLEKM 558
>sp|P0C896|PP209_ARATH Pentatricopeptide repeat-containing protein At3g02650, mitochondrial OS=Arabidopsis thaliana GN=At3g02650 PE=2 SV=1 Length = 576
Score = 43.9 bits (102), Expect = 5e-04 Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 3/129 (2%) Frame = +1
Query: 4 WTWRILVDMNVKGGRFEEAQKITKEMVGRGRSIDLPVYMNLIQGYGKSKDFKSVLSVMND 183 +T+ +++ KGG +EAQ+I E + + + Y LI+GY K +++ L ++N+ Sbjct: 443 YTYTVIISGYAKGGMMDEAQEILAEAKKKHKKLSPVTYHALIRGYCKIEEYDEALKLLNE 502
Query: 184 IKAANVPFDHMLAGALLSALVLCEEAGSEEKLP-LVEEIGLVYPKLKAVIENLYK--EES 354 + V + L+ + C +A EK L EE+ L A+ + L + +E Sbjct: 503 MDRFGVQPNADEYNKLIQS--FCLKALDWEKAEVLFEEMKQKGLHLNAISQGLIRAVKEM 560
Query: 355 ISTAKVKED 381 S AKV ED Sbjct: 561 ESEAKVTED 569
>sp|O04647|PP399_ARATH Pentatricopeptide repeat-containing protein At5g27270 OS=Arabidopsis thaliana GN=EMB976 PE=2 SV=2 Length = 1038
Score = 43.5 bits (101), Expect = 7e-04 Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 3/88 (3%) Frame = +1
Query: 7 TWRILVDMNVKGGRFEEAQKITKEMVGRGRSIDLPVYMNLIQGYGKSKDFKSVLSVMNDI 186 ++ ++V + E ++ + M GR DL Y+ LIQ Y +S F + + Sbjct: 881 SYNMMVKICATSRLHHEVDELLQAMERNGRCTDLSTYLTLIQVYAESSQFAEAEKTITLV 940
Query: 187 KAANVPFDHMLAGALLSALV---LCEEA 261 K +P H +LLSALV + EEA Sbjct: 941 KEKGIPLSHSHFSSLLSALVKAGMMEEA 968
Score = 30.4 bits (67), Expect = 5.9 Identities = 14/65 (21%), Positives = 32/65 (49%) Frame = +1
Query: 7 TWRILVDMNVKGGRFEEAQKITKEMVGRGRSIDLPVYMNLIQGYGKSKDFKSVLSVMNDI 186 T+ ++ + +G + ++A +I G +D +Y N+I YGK LS+ +++ Sbjct: 811 TYNTMISVYGRGLQLDKAIEIFSNARRSGLYLDEKIYTNMIMHYGKGGKMSEALSLFSEM 870
Query: 187 KAANV 201 + + Sbjct: 871 QKKGI 875
>sp|Q9FFE3|PP388_ARATH Pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Arabidopsis thaliana GN=At5g16420 PE=2 SV=1 Length = 535
Score = 43.5 bits (101), Expect = 7e-04 Identities = 27/97 (27%), Positives = 49/97 (50%) Frame = +1
Query: 7 TWRILVDMNVKGGRFEEAQKITKEMVGRGRSIDLPVYMNLIQGYGKSKDFKSVLSVMNDI 186 T+ ++ V G E A+++ +EM+ RG D Y L+ GY K F +VM+D+ Sbjct: 228 TYTTILGGYVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDM 287
Query: 187 KAANVPFDHMLAGALLSALVLCEEAGSEEKLPLVEEI 297 + + + + G ++ A LC+E S E + +E+ Sbjct: 288 EKNEIEPNEVTYGVMIRA--LCKEKKSGEARNMFDEM 322
>sp|Q9FMQ1|PP376_ARATH Pentatricopeptide repeat-containing protein At5g12100, mitochondrial OS=Arabidopsis thaliana GN=At5g12100 PE=2 SV=1 Length = 816
Score = 42.7 bits (99), Expect = 0.001 Identities = 43/180 (23%), Positives = 80/180 (44%), Gaps = 11/180 (6%) Frame = +1
Query: 10 WRILVDMNVKGGRFEEAQKITKEMVGRGRSIDLPVYMNLIQGYGKSKDFKSVLSVMNDIK 189 + +L+D KG R +A+++ EM+ R L Y LI GY K+ + + V +K Sbjct: 217 YNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMK 276
Query: 190 AAN-----VPFDHMLAGALLSALVLCEEAGSEEKLPLVEEIGLVYPKLKAVI------EN 336 A + + F+ +L G + +V E+A E L ++++G V I N Sbjct: 277 ADHIEPSLITFNTLLKGLFKAGMV--EDA--ENVLKEMKDLGFVPDAFTFSILFDGYSSN 332
Query: 337 LYKEESISTAKVKEDIRAMLNGAAEDCRRPFCNLLLDLCWMKQSAEQAQELLGIAISFGI 516 E ++ + D +N C++LL+ + E+A+E+LG ++ G+ Sbjct: 333 EKAEAALGVYETAVDSGVKMNAYT-------CSILLNALCKEGKIEKAEEILGREMAKGL 385
Score = 34.7 bits (78), Expect = 0.31 Identities = 25/99 (25%), Positives = 47/99 (47%) Frame = +1
Query: 7 TWRILVDMNVKGGRFEEAQKITKEMVGRGRSIDLPVYMNLIQGYGKSKDFKSVLSVMNDI 186 T+ L+D G+ EA+ + E+ +G D+ Y +LI GYG + + + +++ ++ Sbjct: 566 TYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEM 625
Query: 187 KAANVPFDHMLAGALLSALVLCEEAGSEEKLPLVEEIGL 303 K + + L+S LC + G E L E+ L Sbjct: 626 KRSGIKPTLKTYHLLIS---LCTKEGIELTERLFGEMSL 661
Score = 33.5 bits (75), Expect = 0.69 Identities = 27/97 (27%), Positives = 42/97 (43%) Frame = +1
Query: 7 TWRILVDMNVKGGRFEEAQKITKEMVGRGRSIDLPVYMNLIQGYGKSKDFKSVLSVMNDI 186 T+ L+ K G E+A+ + KEM G D + L GY ++ ++ L V Sbjct: 286 TFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETA 345
Query: 187 KAANVPFDHMLAGALLSALVLCEEAGSEEKLPLVEEI 297 + V + LL+A LC+E K+ EEI Sbjct: 346 VDSGVKMNAYTCSILLNA--LCKEG----KIEKAEEI 376
Score = 32.7 bits (73), Expect = 1.2 Identities = 18/76 (23%), Positives = 36/76 (47%) Frame = +1
Query: 10 WRILVDMNVKGGRFEEAQKITKEMVGRGRSIDLPVYMNLIQGYGKSKDFKSVLSVMNDIK 189 + +L+D G+ E+A + +KEM+ +G ++L Y LI G + ++ +I Sbjct: 532 YNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEIS 591
Query: 190 AANVPFDHMLAGALLS 237 + D +L+S Sbjct: 592 RKGLKPDVFTYNSLIS 607
Score = 31.6 bits (70), Expect = 2.6 Identities = 20/91 (21%), Positives = 40/91 (43%) Frame = +1
Query: 4 WTWRILVDMNVKGGRFEEAQKITKEMVGRGRSIDLPVYMNLIQGYGKSKDFKSVLSVMND 183 +T IL++ K G+ E+A++I + +G + +Y +I GY + D + Sbjct: 355 YTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEA 414
Query: 184 IKAANVPFDHMLAGALLSALVLCEEAGSEEK 276 ++ + DH+ L+ E + EK Sbjct: 415 MEKQGMKPDHLAYNCLIRRFCELGEMENAEK 445
>sp|Q6NKW7|PP164_ARATH Pentatricopeptide repeat-containing protein At2g19280 OS=Arabidopsis thaliana GN=At2g19280 PE=2 SV=2 Length = 693
Score = 42.4 bits (98), Expect = 0.001 Identities = 20/81 (24%), Positives = 42/81 (51%) Frame = +1
Query: 7 TWRILVDMNVKGGRFEEAQKITKEMVGRGRSIDLPVYMNLIQGYGKSKDFKSVLSVMNDI 186 T IL+ + G +A+ + + M G +D+ Y NL+ GYGK+ V +++++ Sbjct: 445 TSTILIGACSRFGSISDAESVFRNMKTEGLKLDVVTYNNLMHGYGKTHQLNKVFELIDEM 504
Query: 187 KAANVPFDHMLAGALLSALVL 249 ++A + D L+ ++V+ Sbjct: 505 RSAGISPDVATYNILIHSMVV 525
Score = 32.0 bits (71), Expect = 2.0 Identities = 23/97 (23%), Positives = 43/97 (44%) Frame = +1
Query: 7 TWRILVDMNVKGGRFEEAQKITKEMVGRGRSIDLPVYMNLIQGYGKSKDFKSVLSVMNDI 186 T+ IL+ V G +EA +I E++ RG + ++I G+ K DF+ + + Sbjct: 515 TYNILIHSMVVRGYIDEANEIISELIRRGFVPSTLAFTDVIGGFSKRGDFQEAFILWFYM 574
Query: 187 KAANVPFDHMLAGALLSALVLCEEAGSEEKLPLVEEI 297 + D + ALL C+ E+ + L ++ Sbjct: 575 ADLRMKPDVVTCSALLHG--YCKAQRMEKAIVLFNKL 609
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TFK6 |
Definition |
tr|A9TFK6|A9TFK6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
180 |
Score (bit) |
98.2 |
E-value |
2.0e-19 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK952576|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0014_H12, 5' (546 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9TFK6|A9TFK6_PHYPA Predicted protein OS=Physcomitrella paten... 98 2e-19 tr|A9TLE9|A9TLE9_PHYPA Predicted protein OS=Physcomitrella paten... 92 1e-17 tr|A7PCA5|A7PCA5_VITVI Chromosome chr2 scaffold_11, whole genome... 86 1e-15 tr|Q9FSB6|Q9FSB6_RAPSA 67kD chloroplastic RNA-binding protein, P... 82 2e-14 tr|Q9FSB5|Q9FSB5_RAPSA RSP67.2 OS=Raphanus sativus PE=4 SV=1 76 1e-12 tr|B7ZXQ1|B7ZXQ1_MAIZE Putative uncharacterized protein OS=Zea m... 76 1e-12 tr|B4F8M2|B4F8M2_MAIZE Putative uncharacterized protein OS=Zea m... 76 1e-12 tr|B6SPS8|B6SPS8_MAIZE Salt-inducible protein OS=Zea mays PE=2 SV=1 75 2e-12 tr|Q75IP8|Q75IP8_ORYSJ Putative chloroplastic RNA-binding protei... 72 1e-11 tr|Q75IP7|Q75IP7_ORYSJ Os03g0856100 protein OS=Oryza sativa subs... 72 1e-11 tr|B8ANR5|B8ANR5_ORYSI Putative uncharacterized protein OS=Oryza... 72 1e-11 tr|A7R3Z6|A7R3Z6_VITVI Chromosome undetermined scaffold_594, who... 72 2e-11 tr|A7R299|A7R299_VITVI Chromosome undetermined scaffold_410, who... 72 2e-11 tr|A5B4A6|A5B4A6_VITVI Putative uncharacterized protein OS=Vitis... 70 6e-11 tr|Q10PZ4|Q10PZ4_ORYSJ RSP67.2, putative, expressed OS=Oryza sat... 60 6e-08 tr|Q0DTZ4|Q0DTZ4_ORYSJ Os03g0215900 protein OS=Oryza sativa subs... 60 6e-08 tr|B8AQT7|B8AQT7_ORYSI Putative uncharacterized protein OS=Oryza... 60 6e-08 tr|A3AFH5|A3AFH5_ORYSJ Putative uncharacterized protein OS=Oryza... 60 6e-08 tr|B4F8Z1|B4F8Z1_MAIZE Putative uncharacterized protein OS=Zea m... 60 1e-07 tr|Q8LHA7|Q8LHA7_ORYSJ Os07g0621100 protein OS=Oryza sativa subs... 49 1e-04 tr|A3BMA4|A3BMA4_ORYSJ Putative uncharacterized protein OS=Oryza... 49 1e-04 tr|A7QFV5|A7QFV5_VITVI Chromosome undetermined scaffold_89, whol... 49 2e-04 tr|A7Q2Y5|A7Q2Y5_VITVI Chromosome chr12 scaffold_47, whole genom... 48 3e-04 tr|Q8LQY2|Q8LQY2_ORYSJ cDNA clone:J013158F03, full insert sequen... 47 7e-04 tr|Q5QN81|Q5QN81_ORYSJ Pentatricopeptide (PPR) repeat-containing... 47 7e-04 tr|B8ABZ0|B8ABZ0_ORYSI Putative uncharacterized protein OS=Oryza... 47 7e-04 tr|A2WQI0|A2WQI0_ORYSI Putative uncharacterized protein OS=Oryza... 47 7e-04 tr|A9TSP1|A9TSP1_PHYPA Predicted protein OS=Physcomitrella paten... 47 9e-04 tr|A7R617|A7R617_VITVI Chromosome undetermined scaffold_1129, wh... 46 0.001 tr|A5BUC8|A5BUC8_VITVI Putative uncharacterized protein OS=Vitis... 46 0.001
>tr|A9TFK6|A9TFK6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_194612 PE=4 SV=1 Length = 570
Score = 98.2 bits (243), Expect = 2e-19 Identities = 53/180 (29%), Positives = 101/180 (56%) Frame = +1
Query: 1 DWTWRILVDMNVKGGRFEEAQKITKEMVGRGRSIDLPVYMNLIQGYGKSKDFKSVLSVMN 180 DWT+R ++ + K G EAQ++ ++V G D+ Y +L+QGYG +KD++ V +++ Sbjct: 287 DWTYRNMISLYAKNGMAVEAQRMFSQLVEAGYQPDVMSYTSLLQGYGNAKDYEKVQEILH 346
Query: 181 DIKAANVPFDHMLAGALLSALVLCEEAGSEEKLPLVEEIGLVYPKLKAVIENLYKEESIS 360 ++ +AN D L +L+ L C+ E L + + P + ++ +++ EE++ Sbjct: 347 EMVSANCAPDERLWCVILNLLDACDTDVEFEILRSC--LRMCNPTMDNIVGHIF-EENLV 403
Query: 361 TAKVKEDIRAMLNGAAEDCRRPFCNLLLDLCWMKQSAEQAQELLGIAISFGIYSELQIRT 540 K+ + ++++L+ AE+ +P CN LL L W K A +LL + S G+Y+ LQ ++ Sbjct: 404 LKKLGDGLQSLLSDMAEEAHKPICNSLLQLIWHKGDRNYAFKLLSLFCSSGVYTGLQTKS 463
>tr|A9TLE9|A9TLE9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_196204 PE=4 SV=1 Length = 570
Score = 92.4 bits (228), Expect = 1e-17 Identities = 47/181 (25%), Positives = 95/181 (52%) Frame = +1
Query: 1 DWTWRILVDMNVKGGRFEEAQKITKEMVGRGRSIDLPVYMNLIQGYGKSKDFKSVLSVMN 180 DWT+R ++ + K G EA + +MV G ID+ Y +L+Q YG +K++ V +++ Sbjct: 287 DWTYRNMISVYAKKGMAVEAHRTFSQMVEAGYQIDVMAYTSLLQAYGNAKEYNKVQEILD 346
Query: 181 DIKAANVPFDHMLAGALLSALVLCEEAGSEEKLPLVEEIGLVYPKLKAVIENLYKEESIS 360 ++ + N D L +L+ L C+ ++E+L ++ + I EE++ Sbjct: 347 EMTSVNCAPDERLCCVILNLLDSCD---TDEELGILRSCLRMCSSTMDTIVGQIFEENLV 403
Query: 361 TAKVKEDIRAMLNGAAEDCRRPFCNLLLDLCWMKQSAEQAQELLGIAISFGIYSELQIRT 540 +++ +++++L+ E+ +P CN L+ L W K + +LL + G+Y+ LQ ++ Sbjct: 404 LRELRGELQSLLSDITEEAHKPICNSLMQLSWHKGDRNHSFQLLSLFRVLGVYTGLQTKS 463
Query: 541 P 543 P Sbjct: 464 P 464
>tr|A7PCA5|A7PCA5_VITVI Chromosome chr2 scaffold_11, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00015784001 PE=4 SV=1 Length = 723
Score = 86.3 bits (212), Expect = 1e-15 Identities = 56/179 (31%), Positives = 90/179 (50%) Frame = +1
Query: 4 WTWRILVDMNVKGGRFEEAQKITKEMVGRGRSIDLPVYMNLIQGYGKSKDFKSVLSVMND 183 W++ ++++ GG + A ++ EM G I++ L Q G+++ ++ V Sbjct: 446 WSYTAMLNIYGSGGNVDRAMQLFDEMSELGVQINVMGCTCLSQCLGRARRIDDLVKVFEV 505
Query: 184 IKAANVPFDHMLAGALLSALVLCEEAGSEEKLPLVEEIGLVYPKLKAVIENLYKEESIST 363 V D L G LLS + CE G+E+ ++ + PKL A + L EE IS Sbjct: 506 SLERGVKPDDRLCGCLLSVVSFCE--GAEDANKVLACLQQANPKLVAFVNLL--EEKISF 561
Query: 364 AKVKEDIRAMLNGAAEDCRRPFCNLLLDLCWMKQSAEQAQELLGIAISFGIYSELQIRT 540 +KE+ R +L A + RRPFCN L+D+C + E+A ELL + +G+Y L RT Sbjct: 562 EALKEEFRGILTDTAVEARRPFCNCLIDICRNRSLHERAHELLYLGTLYGLYPGLHNRT 620
Score = 39.3 bits (90), Expect = 0.14 Identities = 25/89 (28%), Positives = 45/89 (50%) Frame = +1
Query: 10 WRILVDMNVKGGRFEEAQKITKEMVGRGRSIDLPVYMNLIQGYGKSKDFKSVLSVMNDIK 189 + L++ K G+ A+ + +EMVG G D L++ YGK++ + L + ++ Sbjct: 342 YNTLLEAMGKAGKPGLARSLFEEMVGSGVIPDAKTLTALVKIYGKARWARDALELWERMR 401
Query: 190 AANVPFDHMLAGALLSALVLCEEAGSEEK 276 + P D +L LLS +C + G EE+ Sbjct: 402 SNGWPMDFILYNTLLS---MCADLGLEEE 427
>tr|Q9FSB6|Q9FSB6_RAPSA 67kD chloroplastic RNA-binding protein, P67.1 OS=Raphanus sativus PE=4 SV=1 Length = 700
Score = 81.6 bits (200), Expect = 2e-14 Identities = 51/179 (28%), Positives = 87/179 (48%) Frame = +1
Query: 4 WTWRILVDMNVKGGRFEEAQKITKEMVGRGRSIDLPVYMNLIQGYGKSKDFKSVLSVMND 183 WT+ L+ + GR EA+ +EM G L V +LIQ YGK+K V+ Sbjct: 420 WTFSSLITVYSCCGRVSEAEAALREMREAGFEPTLFVLTSLIQCYGKAKQVDDVVRTFEQ 479
Query: 184 IKAANVPFDHMLAGALLSALVLCEEAGSEEKLPLVEEIGLVYPKLKAVIENLYKEESIST 363 + + D G LL+ + + +EE L+E + PKL V++ L +EE+ Sbjct: 480 VLELGIEPDDRFCGCLLNVMT---QTPTEEIGKLIECVEKAKPKLGRVVKMLVEEENCEE 536
Query: 364 AKVKEDIRAMLNGAAEDCRRPFCNLLLDLCWMKQSAEQAQELLGIAISFGIYSELQIRT 540 +K++ +++ D + + N L+DLC E+A E+L + + + IYS LQ ++ Sbjct: 537 GVLKKEASELIDSIGSDVNKAYLNCLIDLCVNLNKLEKACEILQLGLEYDIYSGLQSKS 595
>tr|Q9FSB5|Q9FSB5_RAPSA RSP67.2 OS=Raphanus sativus PE=4 SV=1 Length = 700
Score = 76.3 bits (186), Expect = 1e-12 Identities = 50/179 (27%), Positives = 84/179 (46%) Frame = +1
Query: 4 WTWRILVDMNVKGGRFEEAQKITKEMVGRGRSIDLPVYMNLIQGYGKSKDFKSVLSVMND 183 WT+ L+ + GR EA+ +EM G L V +LIQ YGK+K V+ Sbjct: 420 WTFSSLITVYSCCGRVSEAEAALREMREAGFEPTLFVLTSLIQCYGKAKQVDDVVRTFEQ 479
Query: 184 IKAANVPFDHMLAGALLSALVLCEEAGSEEKLPLVEEIGLVYPKLKAVIENLYKEESIST 363 + + D G LL+ + + EE L+ + PKL V + L +EE+ Sbjct: 480 VLELGIEPDDRFCGCLLNVMT---QTPKEEIGKLIGCVEKAKPKLGRVEKMLVEEENCEE 536
Query: 364 AKVKEDIRAMLNGAAEDCRRPFCNLLLDLCWMKQSAEQAQELLGIAISFGIYSELQIRT 540 +K++ +++ D + + N L+DLC E+A E+L + + + IYS LQ ++ Sbjct: 537 GVLKKEASELIDSIGSDVNKAYLNCLIDLCVNLNKLEKACEILQLGLEYDIYSGLQSKS 595
>tr|B7ZXQ1|B7ZXQ1_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 716
Score = 75.9 bits (185), Expect = 1e-12 Identities = 49/185 (26%), Positives = 94/185 (50%), Gaps = 7/185 (3%) Frame = +1
Query: 4 WTWRILVDMNVKGGRFEEAQKITKEMVGRGRSIDLPVYMNLIQGYGKSKDFKSVLSVMND 183 W++ ++++ G + A ++ EM+ G ++ Y +IQ GK++ + + V+ Sbjct: 438 WSYTAMINIYGSNGDTDSALQLFAEMLKGGIEPNIMSYTIVIQCLGKARRIQQAVEVLES 497
Query: 184 IKAANVPFDHMLAGALLSALVLCEEAGSEEKLPLVEEIGLVYPKLKAVIENLYK------ 345 + D L G LLS + L EE+ +V L+ V +NL K Sbjct: 498 GLEKGLKPDDRLCGCLLSVIALSSG----------EEMEMVLSSLEKVNQNLVKLIRVLG 547
Query: 346 EESISTAKVKEDIRAMLNGAAEDCRRPFCNLLLDLCWMKQ-SAEQAQELLGIAISFGIYS 522 + + + E+++++LN AA + RRP+CN L+D+C ++A+E+ +A ++G+YS Sbjct: 548 DAQVGGDDITEELKSVLNSAAPEVRRPYCNCLIDVCRNHGFPPQRAREVFHLAQTYGLYS 607
Query: 523 ELQIR 537 +LQ R Sbjct: 608 KLQSR 612
>tr|B4F8M2|B4F8M2_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 716
Score = 75.9 bits (185), Expect = 1e-12 Identities = 49/185 (26%), Positives = 94/185 (50%), Gaps = 7/185 (3%) Frame = +1
Query: 4 WTWRILVDMNVKGGRFEEAQKITKEMVGRGRSIDLPVYMNLIQGYGKSKDFKSVLSVMND 183 W++ ++++ G + A ++ EM+ G ++ Y +IQ GK++ + + V+ Sbjct: 438 WSYTAMINIYGSNGDTDSALQLFAEMLKGGIEPNIMSYTIVIQCLGKARRIQQAVEVLES 497
Query: 184 IKAANVPFDHMLAGALLSALVLCEEAGSEEKLPLVEEIGLVYPKLKAVIENLYK------ 345 + D L G LLS + L EE+ +V L+ V +NL K Sbjct: 498 GLEKGLKPDDRLCGCLLSVIALSSG----------EEMEMVLSSLEKVNQNLVKLIRVLG 547
Query: 346 EESISTAKVKEDIRAMLNGAAEDCRRPFCNLLLDLCWMKQ-SAEQAQELLGIAISFGIYS 522 + + + E+++++LN AA + RRP+CN L+D+C ++A+E+ +A ++G+YS Sbjct: 548 DAQVGGDDITEELKSVLNSAAPEVRRPYCNCLIDVCRNHGFPPQRAREVFHLAQTYGLYS 607
Query: 523 ELQIR 537 +LQ R Sbjct: 608 KLQSR 612
>tr|B6SPS8|B6SPS8_MAIZE Salt-inducible protein OS=Zea mays PE=2 SV=1 Length = 716
Score = 75.5 bits (184), Expect = 2e-12 Identities = 49/185 (26%), Positives = 94/185 (50%), Gaps = 7/185 (3%) Frame = +1
Query: 4 WTWRILVDMNVKGGRFEEAQKITKEMVGRGRSIDLPVYMNLIQGYGKSKDFKSVLSVMND 183 W++ ++++ G + A ++ EM+ G ++ Y +IQ GK+ + + V+ Sbjct: 438 WSYTAMINIYGSNGDTDSALQLFAEMLKGGIEPNIMSYTIVIQCLGKAHRIQQAVEVLES 497
Query: 184 IKAANVPFDHMLAGALLSALVLCEEAGSEEKLPLVEEIGLVYPKLKAVIENLYK------ 345 + D L G LLS + L EE+ +V L+ V +NL K Sbjct: 498 GLEKGLKPDDRLCGCLLSVIALSSG----------EEMEMVLSSLEKVNQNLVKLIRVLG 547
Query: 346 EESISTAKVKEDIRAMLNGAAEDCRRPFCNLLLDLCWMKQ-SAEQAQELLGIAISFGIYS 522 + + + ++++++LNGAA + RRP+CN L+D+C ++A+E+ +A ++G+YS Sbjct: 548 DAQVGGYDITKELKSVLNGAAPEVRRPYCNCLIDVCRNHGFPPQRAREVFHLAQTYGLYS 607
Query: 523 ELQIR 537 +LQ R Sbjct: 608 KLQSR 612
>tr|Q75IP8|Q75IP8_ORYSJ Putative chloroplastic RNA-binding protein, with alternative splicing isoforms (Putative uncharacterized protein) (Pentatricopeptide, putative, expressed) OS=Oryza sativa subsp. japonica GN=LOC_Os03g63910 PE=4 SV=1 Length = 884
Score = 72.4 bits (176), Expect = 1e-11 Identities = 47/179 (26%), Positives = 90/179 (50%), Gaps = 1/179 (0%) Frame = +1
Query: 4 WTWRILVDMNVKGGRFEEAQKITKEMVGRGRSIDLPVYMNLIQGYGKSKDFKSVLSVMND 183 W++ ++++ G + A ++ EMV G ++ Y +IQ GK+ + + V+ Sbjct: 423 WSYTAMINIYGSSGDADRALQLFAEMVESGIEPNIMSYTIVIQCLGKAGRIQEAVDVLEA 482
Query: 184 IKAANVPFDHMLAGALLSALVLCEEAGSEEKLPLVEEIGLVYPKLKAVIENLYKEESIST 363 A + D L G LLS + L +E L +E++ KL ++ + + Sbjct: 483 GMAKGLKPDDRLCGCLLSVVALSSGDETEVILACLEKVRSNLVKLIRML----GDARVGV 538
Query: 364 AKVKEDIRAMLNGAAEDCRRPFCNLLLDLCWMK-QSAEQAQELLGIAISFGIYSELQIR 537 ++ +++ +LN AA + RRP+CN L+D+C +E+A EL +A +G+YS++ R Sbjct: 539 EDLRVELKGILNSAAPEVRRPYCNCLIDICRNHGYPSERAVELFRLARHYGLYSKIHTR 597
>tr|Q75IP7|Q75IP7_ORYSJ Os03g0856100 protein OS=Oryza sativa subsp. japonica GN=Os03g0856100 PE=4 SV=1 Length = 640
Score = 72.4 bits (176), Expect = 1e-11 Identities = 47/179 (26%), Positives = 90/179 (50%), Gaps = 1/179 (0%) Frame = +1
Query: 4 WTWRILVDMNVKGGRFEEAQKITKEMVGRGRSIDLPVYMNLIQGYGKSKDFKSVLSVMND 183 W++ ++++ G + A ++ EMV G ++ Y +IQ GK+ + + V+ Sbjct: 363 WSYTAMINIYGSSGDADRALQLFAEMVESGIEPNIMSYTIVIQCLGKAGRIQEAVDVLEA 422
Query: 184 IKAANVPFDHMLAGALLSALVLCEEAGSEEKLPLVEEIGLVYPKLKAVIENLYKEESIST 363 A + D L G LLS + L +E L +E++ KL ++ + + Sbjct: 423 GMAKGLKPDDRLCGCLLSVVALSSGDETEVILACLEKVRSNLVKLIRML----GDARVGV 478
Query: 364 AKVKEDIRAMLNGAAEDCRRPFCNLLLDLCWMK-QSAEQAQELLGIAISFGIYSELQIR 537 ++ +++ +LN AA + RRP+CN L+D+C +E+A EL +A +G+YS++ R Sbjct: 479 EDLRVELKGILNSAAPEVRRPYCNCLIDICRNHGYPSERAVELFRLARHYGLYSKIHTR 537
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