DK952578 |
Clone id |
TST38A01NGRL0014_H14 |
Library |
TST38 |
Length |
626 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0014_H14. 5' end sequence. |
Accession |
DK952578 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL1856Contig1 |
Sequence |
AGGTCCTGAAGGGTGGCCCTATCTGGATACATGCCTCACACAGACTCTCTCTCTCTCTCT CTCGCGCGCGCGTACACACACAATTCAACCTTCGTCCCCATGCCGATTGTCAACGCACGC CCTGTCCTGCCGCCGCTGCACTGCAATTTTTGCCTTTGTTGTTGTGCAGCCAGGCAGACT TGGCAGTAGGTGAGCCCTCTTCCATGTAGCCGCGTCGCGGCTCCATATCTCATATTAAAG CCCCCCCTCATGAGCTGCCCTAATCAGGCATGAGCTGCATTAGAATCAATTCAACATAGC GGCCAGCAGCCTCAGTCCTTTCGGCTGACCTACTGTGTTGAAGCCTTTTCTGCCTGTCTG CCCTTCCATCCATGGCAACCTCCGGCATCGGCACCGACTCCCTCGGCACCCCCGGTGCCT CCCTCCATGGCGTCACTGGCCATGAACCCACCTTCGCCCTCTCCGTCAGCAAGGACCCTG ATGGAGCCGACGTCCCCCTCAAATCCAAATTTGCCTTGCCCGTCGATTCTGAGAACAAGG CCAAGAAAATCAAGCTCTGGTCTTTCGCGCCCCCGCATATGCGCACATTCCACCTGTCTT GGATCTCATTCTTCACTTGCTTTGTC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9Y566 |
Definition |
sp|Q9Y566|SHAN1_HUMAN SH3 and multiple ankyrin repeat domains protein 1 OS=Homo sapiens |
Align length |
45 |
Score (bit) |
32.7 |
E-value |
1.6 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK952578|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0014_H14, 5' (626 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q9Y566|SHAN1_HUMAN SH3 and multiple ankyrin repeat domains pr... 33 1.6 sp|Q6W4X9|MUC6_HUMAN Mucin-6 OS=Homo sapiens GN=MUC6 PE=1 SV=2 33 1.6 sp|Q73U79|GUAA_MYCPA GMP synthase [glutamine-hydrolyzing] OS=Myc... 32 2.0 sp|P14270|PDE4D_RAT cAMP-specific 3',5'-cyclic phosphodiesterase... 32 2.7 sp|Q50L42|PA24E_MOUSE Cytosolic phospholipase A2 epsilon OS=Mus ... 32 3.5 sp|Q96MX3|ZNF48_HUMAN Zinc finger protein 48 OS=Homo sapiens GN=... 31 4.5 sp|A5WVX1|K0859_DANRE Putative methyltransferase KIAA0859 homolo... 31 4.5 sp|P16887|H2BS2_STRPU Histone H2B.2, sperm OS=Strongylocentrotus... 31 4.5 sp|O67411|SYV_AQUAE Valyl-tRNA synthetase OS=Aquifex aeolicus GN... 31 5.9 sp|O13817|SEC7C_SCHPO Protein transport protein sec73 OS=Schizos... 31 5.9 sp|P46810|GUAA_MYCLE GMP synthase [glutamine-hydrolyzing] OS=Myc... 31 5.9 sp|Q9C6S1|FH14_ARATH Formin-like protein 14 OS=Arabidopsis thali... 31 5.9 sp|Q94F57|AGP26_ARATH Classical arabinogalactan protein 26 OS=Ar... 31 5.9 sp|Q9BU19|ZN692_HUMAN Zinc finger protein 692 OS=Homo sapiens GN... 30 7.7 sp|Q32LP9|COR2A_BOVIN Coronin-2A OS=Bos taurus GN=CORO2A PE=2 SV=1 30 7.7
>sp|Q9Y566|SHAN1_HUMAN SH3 and multiple ankyrin repeat domains protein 1 OS=Homo sapiens GN=SHANK1 PE=1 SV=1 Length = 2161
Score = 32.7 bits (73), Expect = 1.6 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 5/45 (11%) Frame = +1
Query: 448 PPSPSPSARTLMEP----TSPSNPN-LPCPSILRTRPRKSSSGLS 567 PP+PSPS+ +P +PS N +P P+I+ P SSSG S Sbjct: 1127 PPAPSPSSPASPQPPPAVAAPSEKNSIPIPTIIIKAPSTSSSGRS 1171
>sp|Q6W4X9|MUC6_HUMAN Mucin-6 OS=Homo sapiens GN=MUC6 PE=1 SV=2 Length = 2392
Score = 32.7 bits (73), Expect = 1.6 Identities = 27/61 (44%), Positives = 34/61 (55%), Gaps = 5/61 (8%) Frame = +1
Query: 454 SPSPSARTLME---PTSPSNPNLPCPSILRTRPRKSSSGLSRPRICAHSTCL--GSHSSL 618 SPSPSA + + P+S S+P PS+ SSS +S P HST L GSHSSL Sbjct: 2085 SPSPSAPSTVSSYVPSSHSSPQTSSPSV-----GTSSSFVSAP---VHSTTLSSGSHSSL 2136
Query: 619 A 621 + Sbjct: 2137 S 2137
>sp|Q73U79|GUAA_MYCPA GMP synthase [glutamine-hydrolyzing] OS=Mycobacterium paratuberculosis GN=guaA PE=3 SV=1 Length = 525
Score = 32.3 bits (72), Expect = 2.0 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 4/76 (5%) Frame = +3
Query: 378 TSGIGTDSLGTPGASLH-GVTGHEPTFAL---SVSKDPDGADVPLKSKFALPVDSENKAK 545 TS G L G LH G+ G +P + +V+ PDG +V S A+ EN+A+ Sbjct: 112 TSEYGRTELKVLGGELHSGLPGVQPVWMSHGDAVTAAPDGFEVVASSPGAVVAAFENRAR 171
Query: 546 KIKLWSFAPPHMRTFH 593 ++ + P M T H Sbjct: 172 RLAGVQYHPEVMHTPH 187
>sp|P14270|PDE4D_RAT cAMP-specific 3',5'-cyclic phosphodiesterase 4D OS=Rattus norvegicus GN=Pde4d PE=1 SV=4 Length = 803
Score = 32.0 bits (71), Expect = 2.7 Identities = 18/43 (41%), Positives = 22/43 (51%) Frame = +1
Query: 448 PPSPSPSARTLMEPTSPSNPNLPCPSILRTRPRKSSSGLSRPR 576 PP P PS + ++P P P P TR R +SSG SR R Sbjct: 58 PPPPPPSPQPQLQPPPPPPLPPPPPPPGATRGRYASSGASRVR 100
>sp|Q50L42|PA24E_MOUSE Cytosolic phospholipase A2 epsilon OS=Mus musculus GN=Pla2g4e PE=2 SV=1 Length = 875
Score = 31.6 bits (70), Expect = 3.5 Identities = 12/26 (46%), Positives = 13/26 (50%) Frame = +1
Query: 130 PPLHCNFCLCCCAARQTWQ*VSPLPC 207 P HCNF LCCC + PL C Sbjct: 284 PKSHCNFRLCCCGTHRNDPVCQPLNC 309
>sp|Q96MX3|ZNF48_HUMAN Zinc finger protein 48 OS=Homo sapiens GN=ZNF48 PE=2 SV=1 Length = 618
Score = 31.2 bits (69), Expect = 4.5 Identities = 18/45 (40%), Positives = 20/45 (44%) Frame = +1
Query: 448 PPSPSPSARTLMEPTSPSNPNLPCPSILRTRPRKSSSGLSRPRIC 582 PP PS R P NP P P R R R SG S+P +C Sbjct: 508 PPPPSTLLR-------PHNPPGPVPMAPRPRVRAQPSGPSQPHVC 545
>sp|A5WVX1|K0859_DANRE Putative methyltransferase KIAA0859 homolog OS=Danio rerio GN=si:dkey-19f21.2 PE=2 SV=1 Length = 690
Score = 31.2 bits (69), Expect = 4.5 Identities = 14/43 (32%), Positives = 20/43 (46%) Frame = +3
Query: 390 GTDSLGTPGASLHGVTGHEPTFALSVSKDPDGADVPLKSKFAL 518 GTDS TP +L P + L++ P A P + FA+ Sbjct: 254 GTDSSSTPSLTLCHAASGRPRYTLTIQDGPPSAKTPRSNHFAI 296
>sp|P16887|H2BS2_STRPU Histone H2B.2, sperm OS=Strongylocentrotus purpuratus PE=2 SV=2 Length = 144
Score = 31.2 bits (69), Expect = 4.5 Identities = 22/56 (39%), Positives = 27/56 (48%) Frame = -2
Query: 220 PRRGYMEEGSPTAKSAWLHNNKGKNCSAAAAGQGVR*QSAWGRRLNCVCTRARERE 53 PR+G GSP+ K++ KG A AG+G GRR N V R R RE Sbjct: 10 PRKGSPRRGSPSRKASPKRGGKG----AKRAGKG-------GRRRNVVRRRRRRRE 54
>sp|O67411|SYV_AQUAE Valyl-tRNA synthetase OS=Aquifex aeolicus GN=valS PE=3 SV=1 Length = 1165
Score = 30.8 bits (68), Expect = 5.9 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 10/83 (12%) Frame = +3
Query: 387 IGTDSLGTPGA----------SLHGVTGHEPTFALSVSKDPDGADVPLKSKFALPVDSEN 536 +G + L PG+ L+ + G +P F ++ K +V KS P + Sbjct: 488 MGNEQLVEPGSYLFVYDGKKLDLYKLEGEKPKFLKTLGKGEADLEVTQKSIQIKPERIKK 547
Query: 537 KAKKIKLWSFAPPHMRTFHLSWI 605 ++ K F P H + F+L W+ Sbjct: 548 VEEREKRVKFIPEHWKKFYLDWM 570
>sp|O13817|SEC7C_SCHPO Protein transport protein sec73 OS=Schizosaccharomyces pombe GN=sec73 PE=2 SV=2 Length = 1082
Score = 30.8 bits (68), Expect = 5.9 Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 3/40 (7%) Frame = +1
Query: 445 NPPSPSPSARTLMEPTSPSNPN---LPCPSILRTRPRKSS 555 N PSPS S +L SPS PN P P R+RPR S+ Sbjct: 258 NVPSPSSSVGSLRLYRSPSIPNDVEQPQPQSSRSRPRSST 297
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q84LK4 |
Definition |
tr|Q84LK4|Q84LK4_PHRAU Putative high affinity nitrate transporter OS=Phragmites australis |
Align length |
75 |
Score (bit) |
107.0 |
E-value |
6.0e-22 |
Report |
|