DK952588
Clone id TST38A01NGRL0014_I03
Library
Length 572
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0014_I03. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence
CTCAATTTTAACACTAATTTAGTGTGTAAGTCTATAATAACAAAGTATTAATGTAGGAAT
ATAAACTTAATTAAACATCGGAGTCAAATTTTGTACAATCTTTGAAAGAAGAGAAGAAAA
AAAACTTTTCTTTCACAACAAAGTTGTGAAAAGATGTCGGACCCCCCTCTTGCTTATCTA
TTTACGGATGCAACGTAAAAGTGGTAATAAAAAGTAGATTTTTGAGAATATCTTCCCAAA
TAGGGATTTTTGCTGGAAATCAATGTTTCCCATCCCAACCGGATTTGAGTTGTCTAAGCC
ACTTCTCCTTTTTCCAAATCAAATTGAATTGAATAGCAATAATTATTGCTAAATATTTTA
CCTGAGATACGGGTAGACTTTGGGAGTGGTTGAATAGCTACCTTGTCACATGGAGTTGAT
ATCATACTTTTTTTTTTCTTTCTCTGTTCCCCTTCTTCACTCAGTAAGGATAGAGAAATA
AAGGATAAATAAATAGATTTGATTGATTACCAGCCTCGCTTCAGTTTGTAGGAACTTACA
TTCAGCGATCGTCGCTAAATACGTACTATCTG
■■Homology search results ■■ -
sp_hit_id P59594
Definition sp|P59594|SPIKE_CVHSA Spike glycoprotein OS=Human SARS coronavirus
Align length 61
Score (bit) 30.8
E-value 5.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK952588|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0014_I03, 5'
(572 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P59594|SPIKE_CVHSA Spike glycoprotein OS=Human SARS coronavir... 31 5.0
sp|Q3LZX1|SPIKE_BCHK3 Spike glycoprotein OS=Bat coronavirus HKU3... 30 8.5
sp|Q9QZE2|MIST_MOUSE Mast cell immunoreceptor signal transducer ... 30 8.5

>sp|P59594|SPIKE_CVHSA Spike glycoprotein OS=Human SARS coronavirus
GN=S PE=1 SV=1
Length = 1255

Score = 30.8 bits (68), Expect = 5.0
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Frame = +2

Query: 182 LRMQRKSGNKK*IFENIFPNRD---FCWKSMFPI------PTGFELSKPLLLFPNQIELN 334
L + KSGN K + E +F N+D + +K PI P+GF KP+ P I +
Sbjct: 170 LDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINIT 229

Query: 335 S 337
+
Sbjct: 230 N 230


>sp|Q3LZX1|SPIKE_BCHK3 Spike glycoprotein OS=Bat coronavirus HKU3
GN=S PE=3 SV=1
Length = 1242

Score = 30.0 bits (66), Expect = 8.5
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 10/57 (17%)
Frame = +2

Query: 197 KSGNKK*IFENIFPNRDFCWKSMFP----------IPTGFELSKPLLLFPNQIELNS 337
K+GN K + E +F NRD + S++ +PTGF + KP+L P I + S
Sbjct: 179 KTGNFKDLREYVFKNRDG-FLSVYQTYTAVNLPRGLPTGFSVLKPILKLPFGINITS 234


>sp|Q9QZE2|MIST_MOUSE Mast cell immunoreceptor signal transducer
OS=Mus musculus GN=Mist PE=1 SV=1
Length = 435

Score = 30.0 bits (66), Expect = 8.5
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Frame = +3

Query: 102 LKEEKKKNFSFTTKL*KDVGPPSCLSIYGCNVKVVIKSRFLRISSQIGI---FAGNQCFP 272
+KE K F K P L ++ N +K RFL + Q + GN+ F
Sbjct: 324 MKENKDGTFLVRDCSTKSKAEPYVLVVFYGNKVYNVKIRFLESNQQFALGTGLRGNEMFD 383

Query: 273 SQPDLSCLSHFSFFQIKL 326
S D+ + H+++F I L
Sbjct: 384 SVEDI--IEHYTYFPILL 399


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK952588|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0014_I03, 5'
(572 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******