DK952596 |
Clone id |
TST38A01NGRL0014_I11 |
Library |
TST38 |
Length |
533 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0014_I11. 5' end sequence. |
Accession |
DK952596 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL107Contig1 |
Sequence |
CTCGACTGACACGATATATGAAGGACAAGGAAGATAAAATTGGTGTGGTCGTTGGAACTG TGACGGATGATGTTAGACTGTATGAGCTGCCTGCCTTGAAAATTGCTGCACTCCGATTCA CAGAGACTGCCCGAGCTAGGATTTTGAAAGCCGGGGGAGATTGCCTAACATTCGACCAAC TTGCTTTAAAAGCACCAACCGGCTCAAACACGGTGCTTTTAAGAGGACCCAAGAATGCTC GCGAAGCTGTGAAGCACTTCGGCAGAGCTCCTGGTGTACCACACAGTCACACCAAGCCTT ATGTCCGCTCCAAGGGTCGTAAGTTTGAGAGGGCCCGTGGTCGTCGTAACAGCAGAGGGT ACAAGGTCTAAATCTCTAATCATGTCTACCTGCTAGAGTTCGAGAGGTTTTCCTCCGGTT GACTAGCTCCTTGGCTTTAGAGCACCTGTTTTGGAACGGAAATTTGTTTTTCTAGCAATT GTCCAGCACAGATGCTAGCAGTTTTCCAAAGAGATCTCAAATTGTCTCTGATG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P42791 |
Definition |
sp|P42791|RL182_ARATH 60S ribosomal protein L18-2 OS=Arabidopsis thaliana |
Align length |
122 |
Score (bit) |
179.0 |
E-value |
6.0e-45 |
Report |
![](http://dbarchive.biosciencedbc.jp/images/togodb/expand.png) |
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9P0A7 |
Definition |
tr|A9P0A7|A9P0A7_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
122 |
Score (bit) |
193.0 |
E-value |
5.0e-48 |
Report |
![](http://dbarchive.biosciencedbc.jp/images/togodb/expand.png) BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK952596|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0014_I11, 5' (533 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9P0A7|A9P0A7_PICSI Putative uncharacterized protein OS=Picea... 193 5e-48 tr|A7Q8E9|A7Q8E9_VITVI Chromosome chr5 scaffold_64, whole genome... 193 5e-48 tr|A7PRY5|A7PRY5_VITVI Chromosome chr14 scaffold_27, whole genom... 192 9e-48 tr|A5BIA1|A5BIA1_VITVI Putative uncharacterized protein OS=Vitis... 192 9e-48 tr|A9NME8|A9NME8_PICSI Putative uncharacterized protein OS=Picea... 191 2e-47 tr|A7Q0F4|A7Q0F4_VITVI Chromosome chr7 scaffold_42, whole genome... 190 4e-47 tr|A9NNN6|A9NNN6_PICSI Putative uncharacterized protein OS=Picea... 189 8e-47 tr|A9S3J2|A9S3J2_PHYPA Ribosomal protein L18 OS=Physcomitrella p... 188 1e-46 tr|A9RCW9|A9RCW9_PHYPA Ribosomal protein L18 OS=Physcomitrella p... 188 2e-46 tr|A9PBR7|A9PBR7_POPTR Putative uncharacterized protein OS=Popul... 188 2e-46 tr|A9PAJ5|A9PAJ5_POPTR Putative uncharacterized protein OS=Popul... 188 2e-46 tr|A9TSA3|A9TSA3_PHYPA Ribosomal protein L18 OS=Physcomitrella p... 186 6e-46 tr|Q10LN7|Q10LN7_ORYSJ Ribosomal protein L18 OS=Oryza sativa sub... 186 8e-46 tr|B8APD9|B8APD9_ORYSI Putative uncharacterized protein OS=Oryza... 186 8e-46 tr|Q5I7L0|Q5I7L0_WHEAT Ribosomal protein L18 OS=Triticum aestivu... 185 1e-45 tr|A9S389|A9S389_PHYPA Ribosomal protein L18 OS=Physcomitrella p... 185 1e-45 tr|B6SJC8|B6SJC8_MAIZE 60S ribosomal protein L18 OS=Zea mays PE=... 185 1e-45 tr|B6SJ08|B6SJ08_MAIZE 60S ribosomal protein L18 OS=Zea mays PE=... 185 1e-45 tr|B4FLV3|B4FLV3_MAIZE Putative uncharacterized protein OS=Zea m... 185 1e-45 tr|A9U4T2|A9U4T2_PHYPA Predicted protein OS=Physcomitrella paten... 183 4e-45 tr|B7FMF5|B7FMF5_MEDTR Putative uncharacterized protein OS=Medic... 182 7e-45 tr|A9P8I5|A9P8I5_POPTR Putative uncharacterized protein OS=Popul... 182 1e-44 tr|Q6ZDW5|Q6ZDW5_ORYSJ Ribosomal protein L18 OS=Oryza sativa sub... 180 5e-44 tr|Q5WMY3|Q5WMY3_ORYSJ Ribosomal protein L18 OS=Oryza sativa sub... 180 5e-44 tr|A2YPV7|A2YPV7_ORYSI Ribosomal protein L18 OS=Oryza sativa sub... 180 5e-44 tr|A2Y0K0|A2Y0K0_ORYSI Ribosomal protein L18 OS=Oryza sativa sub... 180 5e-44 tr|A3BNC7|A3BNC7_ORYSJ Ribosomal protein L18 OS=Oryza sativa sub... 178 1e-43 tr|Q2ESH5|Q2ESH5_9POAL Putative 60S ribosomal protein L18 (Fragm... 177 4e-43 tr|A3AHT0|A3AHT0_ORYSJ Ribosomal protein L18 OS=Oryza sativa sub... 175 1e-42 tr|Q011F6|Q011F6_OSTTA Ribosomal protein L18 OS=Ostreococcus tau... 173 6e-42
>tr|A9P0A7|A9P0A7_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 187
Score = 193 bits (490), Expect = 5e-48 Identities = 95/122 (77%), Positives = 103/122 (84%) Frame = +3
Query: 3 RLTRYMKDKEDKIXXXXXXXXXXXRLYELPALKIAALRFTETARARILKAGGDCLTFDQL 182 RL RYM+ KEDKI R+YELP +KI ALRFTETARARILKAGG+CLTFDQL Sbjct: 66 RLARYMQGKEDKIAVVVGTITDDNRVYELPPVKITALRFTETARARILKAGGECLTFDQL 125
Query: 183 ALKAPTGSNTVLLRGPKNAREAVKHFGRAPGVPHSHTKPYVRSKGRKFERARGRRNSRGY 362 AL+AP G NTVLLRGPK+ REAVKHFGRAPGVPHSHTKPYVRSKGRK+E ARGRRNSRG+ Sbjct: 126 ALRAPLGQNTVLLRGPKSHREAVKHFGRAPGVPHSHTKPYVRSKGRKYEMARGRRNSRGF 185
Query: 363 KV 368 KV Sbjct: 186 KV 187
>tr|A7Q8E9|A7Q8E9_VITVI Chromosome chr5 scaffold_64, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00033028001 PE=4 SV=1 Length = 225
Score = 193 bits (490), Expect = 5e-48 Identities = 94/122 (77%), Positives = 103/122 (84%) Frame = +3
Query: 3 RLTRYMKDKEDKIXXXXXXXXXXXRLYELPALKIAALRFTETARARILKAGGDCLTFDQL 182 RL RYM+ KEDKI R+YE+P LK+ ALRFTE ARARI KAGG+CLTFDQL Sbjct: 104 RLIRYMQGKEDKIAVLVGTVTDDLRVYEVPTLKVTALRFTERARARIEKAGGECLTFDQL 163
Query: 183 ALKAPTGSNTVLLRGPKNAREAVKHFGRAPGVPHSHTKPYVRSKGRKFERARGRRNSRGY 362 AL+AP G NTVLLRGPKNAREAVKHFG+APGVPHSHTKPYVRSKGRKFERARGRRNSRG+ Sbjct: 164 ALRAPLGQNTVLLRGPKNAREAVKHFGKAPGVPHSHTKPYVRSKGRKFERARGRRNSRGF 223
Query: 363 KV 368 +V Sbjct: 224 RV 225
>tr|A7PRY5|A7PRY5_VITVI Chromosome chr14 scaffold_27, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00022684001 PE=4 SV=1 Length = 221
Score = 192 bits (488), Expect = 9e-48 Identities = 94/122 (77%), Positives = 103/122 (84%) Frame = +3
Query: 3 RLTRYMKDKEDKIXXXXXXXXXXXRLYELPALKIAALRFTETARARILKAGGDCLTFDQL 182 RL RYM KE KI R+YE+PALK+ ALRFTETARARI KAGG+CLTFDQL Sbjct: 100 RLVRYMGGKEGKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQL 159
Query: 183 ALKAPTGSNTVLLRGPKNAREAVKHFGRAPGVPHSHTKPYVRSKGRKFERARGRRNSRGY 362 AL+AP G NTVLLRGPKN+REAVKHFG+APGVPHSHTKPYVRSKGRKFERARGRRNSRG+ Sbjct: 160 ALRAPLGQNTVLLRGPKNSREAVKHFGKAPGVPHSHTKPYVRSKGRKFERARGRRNSRGF 219
Query: 363 KV 368 +V Sbjct: 220 RV 221
>tr|A5BIA1|A5BIA1_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022459 PE=4 SV=1 Length = 187
Score = 192 bits (488), Expect = 9e-48 Identities = 94/122 (77%), Positives = 103/122 (84%) Frame = +3
Query: 3 RLTRYMKDKEDKIXXXXXXXXXXXRLYELPALKIAALRFTETARARILKAGGDCLTFDQL 182 RL RYM KE KI R+YE+PALK+ ALRFTETARARI KAGG+CLTFDQL Sbjct: 66 RLVRYMGGKEGKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQL 125
Query: 183 ALKAPTGSNTVLLRGPKNAREAVKHFGRAPGVPHSHTKPYVRSKGRKFERARGRRNSRGY 362 AL+AP G NTVLLRGPKN+REAVKHFG+APGVPHSHTKPYVRSKGRKFERARGRRNSRG+ Sbjct: 126 ALRAPLGQNTVLLRGPKNSREAVKHFGKAPGVPHSHTKPYVRSKGRKFERARGRRNSRGF 185
Query: 363 KV 368 +V Sbjct: 186 RV 187
>tr|A9NME8|A9NME8_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 187
Score = 191 bits (486), Expect = 2e-47 Identities = 93/122 (76%), Positives = 103/122 (84%) Frame = +3
Query: 3 RLTRYMKDKEDKIXXXXXXXXXXXRLYELPALKIAALRFTETARARILKAGGDCLTFDQL 182 RL RYM+ K+DKI R+YELP +K+ ALRFTETARARILKAGG+CLTFDQL Sbjct: 66 RLARYMQGKDDKIAVVVGTITDDNRVYELPPVKVTALRFTETARARILKAGGECLTFDQL 125
Query: 183 ALKAPTGSNTVLLRGPKNAREAVKHFGRAPGVPHSHTKPYVRSKGRKFERARGRRNSRGY 362 AL+AP G NTVLLRGPK+ REAVKHFGRAPGVPHSHTKPYVRSKGRK+E ARGRRNSRG+ Sbjct: 126 ALRAPLGQNTVLLRGPKSHREAVKHFGRAPGVPHSHTKPYVRSKGRKYEMARGRRNSRGF 185
Query: 363 KV 368 KV Sbjct: 186 KV 187
>tr|A7Q0F4|A7Q0F4_VITVI Chromosome chr7 scaffold_42, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00028030001 PE=4 SV=1 Length = 134
Score = 190 bits (482), Expect = 4e-47 Identities = 93/122 (76%), Positives = 101/122 (82%) Frame = +3
Query: 3 RLTRYMKDKEDKIXXXXXXXXXXXRLYELPALKIAALRFTETARARILKAGGDCLTFDQL 182 RL RYM KE KI R+YE+P LK+ ALRFTE ARARI KAGG+CLTFDQL Sbjct: 13 RLVRYMDGKEGKIAVVVGTVTDDLRVYEVPCLKVTALRFTERARARIEKAGGECLTFDQL 72
Query: 183 ALKAPTGSNTVLLRGPKNAREAVKHFGRAPGVPHSHTKPYVRSKGRKFERARGRRNSRGY 362 AL+AP G NTVLLRGPKNAREAVKHFG+APGVPHSHTKPYVRSKGRKFERARGRRNSRG+ Sbjct: 73 ALRAPLGQNTVLLRGPKNAREAVKHFGKAPGVPHSHTKPYVRSKGRKFERARGRRNSRGF 132
Query: 363 KV 368 +V Sbjct: 133 RV 134
>tr|A9NNN6|A9NNN6_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 187
Score = 189 bits (480), Expect = 8e-47 Identities = 92/122 (75%), Positives = 102/122 (83%) Frame = +3
Query: 3 RLTRYMKDKEDKIXXXXXXXXXXXRLYELPALKIAALRFTETARARILKAGGDCLTFDQL 182 RL RYM+ K+DK+ R+YELP +K+ ALRFTETARARILKAGG+CLTFDQL Sbjct: 66 RLARYMQGKDDKVAVVVGTITDDNRVYELPPVKVTALRFTETARARILKAGGECLTFDQL 125
Query: 183 ALKAPTGSNTVLLRGPKNAREAVKHFGRAPGVPHSHTKPYVRSKGRKFERARGRRNSRGY 362 AL AP G NTVLLRGPK+ REAVKHFGRAPGVPHSHTKPYVRSKGRK+E ARGRRNSRG+ Sbjct: 126 ALCAPLGQNTVLLRGPKSHREAVKHFGRAPGVPHSHTKPYVRSKGRKYEMARGRRNSRGF 185
Query: 363 KV 368 KV Sbjct: 186 KV 187
>tr|A9S3J2|A9S3J2_PHYPA Ribosomal protein L18 OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_208285 PE=3 SV=1 Length = 186
Score = 188 bits (478), Expect = 1e-46 Identities = 96/122 (78%), Positives = 103/122 (84%) Frame = +3
Query: 3 RLTRYMKDKEDKIXXXXXXXXXXXRLYELPALKIAALRFTETARARILKAGGDCLTFDQL 182 RL RYMK KEDKI R+YE+PALK+AALRFTETARARILK GG+ LTFDQL Sbjct: 66 RLVRYMKGKEDKIAVIVGSVTDDTRIYEVPALKVAALRFTETARARILKNGGEVLTFDQL 125
Query: 183 ALKAPTGSNTVLLRGPKNAREAVKHFGRAPGVPHSHTKPYVRSKGRKFERARGRRNSRGY 362 AL+APTGSN VLLRGPKNAREAVKHFG APGVP SH KPYVRSKGRKFE+ARGRRNSRG+ Sbjct: 126 ALRAPTGSNCVLLRGPKNAREAVKHFG-APGVPRSHAKPYVRSKGRKFEKARGRRNSRGF 184
Query: 363 KV 368 KV Sbjct: 185 KV 186
>tr|A9RCW9|A9RCW9_PHYPA Ribosomal protein L18 OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_158546 PE=3 SV=1 Length = 186
Score = 188 bits (477), Expect = 2e-46 Identities = 94/122 (77%), Positives = 104/122 (85%) Frame = +3
Query: 3 RLTRYMKDKEDKIXXXXXXXXXXXRLYELPALKIAALRFTETARARILKAGGDCLTFDQL 182 RL +YM K+DKI R +E+PALK+AALRFTETARARILKAGG+CLTFDQL Sbjct: 66 RLVKYMAGKDDKIAVLVGTITDDVRQFEVPALKVAALRFTETARARILKAGGECLTFDQL 125
Query: 183 ALKAPTGSNTVLLRGPKNAREAVKHFGRAPGVPHSHTKPYVRSKGRKFERARGRRNSRGY 362 AL+APTG+NTVLLRGPKNAREAVKHFG APGVP SH KPYVRSKGRKFE+ARGRRNSRG+ Sbjct: 126 ALRAPTGANTVLLRGPKNAREAVKHFG-APGVPQSHAKPYVRSKGRKFEKARGRRNSRGF 184
Query: 363 KV 368 KV Sbjct: 185 KV 186
>tr|A9PBR7|A9PBR7_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 187
Score = 188 bits (477), Expect = 2e-46 Identities = 91/122 (74%), Positives = 102/122 (83%) Frame = +3
Query: 3 RLTRYMKDKEDKIXXXXXXXXXXXRLYELPALKIAALRFTETARARILKAGGDCLTFDQL 182 RL YMK KE KI R+YE+PALK+ ALRFTETARARI KAGG+CLTFDQL Sbjct: 66 RLITYMKGKEGKIAVVVGTITDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQL 125
Query: 183 ALKAPTGSNTVLLRGPKNAREAVKHFGRAPGVPHSHTKPYVRSKGRKFERARGRRNSRGY 362 AL+AP G NTVLLRGPKNAREAVKHFG APGVPHSHTKPY+RSKGRKFE+ARG+RNS+G+ Sbjct: 126 ALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYIRSKGRKFEKARGKRNSKGF 185
Query: 363 KV 368 +V Sbjct: 186 RV 187
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