DK952602 |
Clone id |
TST38A01NGRL0014_I18 |
Library |
TST38 |
Length |
617 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0014_I18. 5' end sequence. |
Accession |
DK952602 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL42Contig1 |
Sequence |
AGCGCCCATTTGATTGGGGGTCTGCTCTTCTGACCGTTTAGGGTTTCGCTACTGCTGTTA GGGTTTCTCCACGTGCCATCGTGATTTAGTTCGAGCTACCGTAATTCGGTCTTGTAGATC ACTACAGAATTTCCGTATCGACGCGAGGTTTTGGGACACAGCAGATCTCTCTCGTTCTAC TTCAGATCTGTGTCCAGGAGCTAAGCGAGCTCAGGATTGATGGAGAATATTTATTCTTTC TGGAGTCTAAATGACAATAATCGGCGCTCTCCCACTGAGATGCAAGAGGATCAAAGCTGG AAAGTAGCAGCTACCAAGCTTGCTTTTGCGGATCAGATGAGGCTGAAGTTTGATAGGTCT AGATCTGATGCGAAGGTTGTGGCCCCTCATGAGAAGAACATTAAACAAGCAAAGGGACGA TCCAAGGGCAGAGCTGAAGACATGCTGAAGGGGGAAGGTTTCAACCAGAAGTTTTCGGAT GGGGATTTGAGATATGGAGATTTGGGTCAGAAGCTTGGAGCAGGTAACATGTCAACATCA CAGATTGTTGGCAGTGCAGATAAACGATTCAAGTCTCTTCCGCCTGCTGAAACACTTCCT AGACACGAAACTTTGGG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P37707 |
Definition |
sp|P37707|B2_DAUCA B2 protein OS=Daucus carota |
Align length |
32 |
Score (bit) |
38.5 |
E-value |
0.028 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B8LQZ7 |
Definition |
tr|B8LQZ7|B8LQZ7_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
153 |
Score (bit) |
66.6 |
E-value |
1.0e-09 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK952602|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0014_I18, 5' (617 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B8LQZ7|B8LQZ7_PICSI Putative uncharacterized protein OS=Picea... 67 1e-09 tr|A9NP04|A9NP04_PICSI Putative uncharacterized protein OS=Picea... 54 7e-06 tr|B7FJI3|B7FJI3_MEDTR Putative uncharacterized protein OS=Medic... 52 3e-05 tr|Q38HW1|Q38HW1_SOLTU Putative uncharacterized protein OS=Solan... 51 6e-05 tr|O23769|O23769_CITPA Putative uncharacterized protein OS=Citru... 50 8e-05 tr|Q9LSC7|Q9LSC7_ARATH Similarity to unknown protein (AT3g27090/... 46 0.002 tr|Q8LBT1|Q8LBT1_ARATH Gda-1, putative OS=Arabidopsis thaliana P... 46 0.002 tr|A9PHN9|A9PHN9_POPTR Putative uncharacterized protein OS=Popul... 39 0.19 tr|A9RF70|A9RF70_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.32 tr|B6T8N2|B6T8N2_MAIZE Gda-1 OS=Zea mays PE=2 SV=1 38 0.42 tr|A9T5I7|A9T5I7_PHYPA Predicted protein OS=Physcomitrella paten... 38 0.42 tr|Q9FHX9|Q9FHX9_ARATH Arabidopsis thaliana genomic DNA, chromos... 37 0.93 tr|Q8RXN8|Q8RXN8_ARATH Putative uncharacterized protein At5g4205... 37 0.93 tr|B8A073|B8A073_MAIZE Putative uncharacterized protein OS=Zea m... 37 0.93 tr|Q8G712|Q8G712_BIFLO Putative uncharacterized protein OS=Bifid... 36 2.1 tr|B3DU84|B3DU84_BIFLD Subtilisin-like serine protease OS=Bifido... 36 2.1 tr|Q3T552|Q3T552_BIFLO Endo-alpha-N-acetylgalactosaminidase OS=B... 36 2.1 tr|B2C4I9|B2C4I9_BIFLO EngBF (Fragment) OS=Bifidobacterium longu... 36 2.1 tr|B2C4I3|B2C4I3_BIFLO EngBF (Fragment) OS=Bifidobacterium longu... 36 2.1 tr|B2C4I2|B2C4I2_BIFLO EngBF (Fragment) OS=Bifidobacterium longu... 36 2.1 tr|B2C4I1|B2C4I1_BIFLO EngBF (Fragment) OS=Bifidobacterium longu... 36 2.1 tr|B2C4I0|B2C4I0_BIFLO EngBF (Fragment) OS=Bifidobacterium longu... 36 2.1 tr|B2C4H8|B2C4H8_BIFLO EngBF (Fragment) OS=Bifidobacterium longu... 36 2.1 tr|B2C4H7|B2C4H7_BIFLO EngBF (Fragment) OS=Bifidobacterium longu... 36 2.1 tr|B2C4H6|B2C4H6_BIFLO EngBF (Fragment) OS=Bifidobacterium longu... 36 2.1 tr|Q8L6E9|Q8L6E9_PEA GDA2 protein OS=Pisum sativum GN=gda2 PE=2 ... 36 2.1 tr|Q3J402|Q3J402_RHOS4 Rod shape-determining protein MreC OS=Rho... 35 4.6 tr|A3PIE7|A3PIE7_RHOS1 Rod shape-determining protein MreC OS=Rho... 35 4.6 tr|Q70AN6|Q70AN6_RHOSH MreC protein OS=Rhodobacter sphaeroides G... 35 4.6 tr|A4WSY0|A4WSY0_RHOS5 Rod shape-determining protein MreC OS=Rho... 34 6.0
>tr|B8LQZ7|B8LQZ7_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 282
Score = 66.6 bits (161), Expect = 1e-09 Identities = 50/153 (32%), Positives = 69/153 (45%), Gaps = 21/153 (13%) Frame = +1
Query: 220 MENIYSFWSLNDNNRRSPTEMQEDQSWKVAATKLAFADQMRLKFDRSRSDAKVVAPHEKN 399 M N YSFW + R +D W +AA++LA A+ R K DR+ +P E Sbjct: 1 MANPYSFWQFGEE-LRGQARASDDHKWTLAASQLALAEHKRSKGDRTNRSEPTESPSEA- 58
Query: 400 IKQAKGRSKGRAE-DMLKGEGFNQKFSDGDLRYGDLGQKLGA------------------ 522 + KG+ KG++E L+ N K + D + GD G K GA Sbjct: 59 --KQKGKYKGKSEVSKLEALTLNLKQMNLDWKPGDAGVKGGALNDIYNASTPYHNNNSGN 116
Query: 523 --GNMSTSQIVGSADKRFKSLPPAETLPRHETL 615 N + S + DKRFK+LP E LPR+E L Sbjct: 117 NNNNNNGSNNNNAYDKRFKTLPSTEMLPRNEIL 149
>tr|A9NP04|A9NP04_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 273
Score = 53.9 bits (128), Expect = 7e-06 Identities = 46/146 (31%), Positives = 74/146 (50%), Gaps = 14/146 (9%) Frame = +1
Query: 220 MENIYSFWSLNDNNRRSPTEMQEDQSWKVAATKLAFADQMRLKFDRSRSDAKVVAPHEKN 399 M + ++FW L ++ R +E DQ+W +AA+KLA +Q R K DR S + E Sbjct: 1 MVDSFAFWQLGESLRGLSSE---DQNWTLAASKLATFEQTRGKSDRINSLEPKTSYAE-- 55
Query: 400 IKQAKGRSKGRAEDMLKGEGFN--QKFSDGDLRYG------DLGQKLGAGNMSTSQ---- 543 +K G+S G+ E++ + FN K ++ + G ++ + N +TS Sbjct: 56 VKHRGGKSNGKLEEVNDNQ-FNLIWKPAEAGTKVGIVHGGYNINHVINYNNNNTSSNGNN 114
Query: 544 --IVGSADKRFKSLPPAETLPRHETL 615 S +KRFK+LP +E LPR+E L Sbjct: 115 NYNNNSFEKRFKTLPSSEMLPRNEIL 140
>tr|B7FJI3|B7FJI3_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 302
Score = 52.0 bits (123), Expect = 3e-05 Identities = 50/171 (29%), Positives = 70/171 (40%), Gaps = 39/171 (22%) Frame = +1
Query: 220 MENIYSFWSLNDNNRRSPTEMQEDQSWKVAATKLAFADQMRLKFDRSRSDAKVVAPHEKN 399 M+N++SFW L D R ++ ED W + A+KLA + R K +R + P E Sbjct: 1 MDNMHSFWQLGDE-LRGHSKASEDHKWLMVASKLA---EQRSKAERFNNLDLSKGPLETR 56
Query: 400 IKQAKGRSKGRAEDMLK------GEGFNQKFSDGDLRYGDLG-----QKLG---AGNMST 537 + G + D L F + S LR G QK AGNM++ Sbjct: 57 PRDKFGFQEENKFDTLNLSMLNLDSKFTENMSKSSLRNGVYNMNAVYQKSNVNFAGNMNS 116
Query: 538 SQIVGSA-------------------------DKRFKSLPPAETLPRHETL 615 ++ G+ DKRFK+LP AETLPR+E L Sbjct: 117 NKYSGNVQLNKDPHNNNSNNNNNNNENNSNATDKRFKTLPAAETLPRNEVL 167
>tr|Q38HW1|Q38HW1_SOLTU Putative uncharacterized protein OS=Solanum tuberosum PE=2 SV=1 Length = 298
Score = 50.8 bits (120), Expect = 6e-05 Identities = 46/169 (27%), Positives = 68/169 (40%), Gaps = 37/169 (21%) Frame = +1
Query: 220 MENIYSFWSLNDNNRRSPTEMQEDQSWKVAATKLA----FADQMRLKFDRSRSDAKVVAP 387 MEN+ S+W D R ++ ED W AA KL+ + + R D S+S A+ + P Sbjct: 1 MENMQSYWQFGD-ELRGQSKASEDHKWSTAALKLSEQMKYKGERRNNLDLSKSSAE-IRP 58
Query: 388 HEKNI-------------------KQAKGRSKGRAEDML--------------KGEGFNQ 468 ++ K + SK R D + G Sbjct: 59 RGNHMFQEDNKWESLNFNMLNLESKMTENMSKNRIMDSIYNANPVYLNPNFNSLGNSSLS 118
Query: 469 KFSDGDLRYGDLGQKLGAGNMSTSQIVGSADKRFKSLPPAETLPRHETL 615 KF+ + Y K N+ ++ S DKRFK+LP AETLP++E L Sbjct: 119 KFNASN--YTKEPSKNNNNNVESTNGNNSVDKRFKTLPAAETLPKNEVL 165
>tr|O23769|O23769_CITPA Putative uncharacterized protein OS=Citrus paradisi PE=2 SV=1 Length = 305
Score = 50.4 bits (119), Expect = 8e-05 Identities = 53/184 (28%), Positives = 73/184 (39%), Gaps = 52/184 (28%) Frame = +1
Query: 220 MENIYSFWSLNDNNRRSPTEMQEDQSWKVAATKLAFADQMRLKFDRSRSDAKVVAPHEKN 399 M+N++SFW L D R + EDQSW AA++L A+Q R K +R N Sbjct: 1 MDNMHSFWQLGD-ELRGQSRTSEDQSWLRAASRL--AEQTRFKGERM-----------NN 46
Query: 400 IKQAKGRSKGRAEDML------KGEGFNQKF-------------SDGDLRYG-------- 498 + +KG ++ R D + E FN F + LR G Sbjct: 47 LDLSKGMTEIRPRDKIMYHEDNNFESFNFNFNMMNLDNKVVENVTKSSLRNGIYNMNAVY 106
Query: 499 ------DLG----QKLGAGNMST---------------SQIVGSADKRFKSLPPAETLPR 603 ++G K G N+S S + DKRFK+LP ETLPR Sbjct: 107 QKNSGHNMGNLMVNKYGGNNLSVKEAENNNNNNNNNNDSNANSALDKRFKTLPATETLPR 166
Query: 604 HETL 615 +E L Sbjct: 167 NEVL 170
>tr|Q9LSC7|Q9LSC7_ARATH Similarity to unknown protein (AT3g27090/MOJ10_18) OS=Arabidopsis thaliana GN=At3g27090 PE=2 SV=1 Length = 296
Score = 45.8 bits (107), Expect = 0.002 Identities = 45/171 (26%), Positives = 64/171 (37%), Gaps = 44/171 (25%) Frame = +1
Query: 235 SFWSLNDNNRRSPTEMQEDQSWKVAATKLAFADQMRLKFDRSRS-----------DAKVV 381 SFW L D R T ED W ATKLA +Q R+K +R + ++ Sbjct: 3 SFWQLGDE-LRGQTRASEDHKWSTVATKLA--EQTRMKGERMNNLDLSKGYTEFRPSEKF 59
Query: 382 APHEKNIKQAKGRSKGRAEDMLKGE--------GFNQKFSDGDLRYGDLGQKLGAGNMST 537 + E N+ G+ + + G+ N F D + G GNM Sbjct: 60 SFQENNLNFNMLNLDGKFGESIMGKTSMQSNVYNMNTVFQKNDFKSG--------GNMKV 111
Query: 538 SQIVGSA-------------------------DKRFKSLPPAETLPRHETL 615 ++ G+ DKRFK+LP +ETLPR+E L Sbjct: 112 NKYNGNVVANKEMSNNKHNNNCNDNGNMNLAVDKRFKTLPASETLPRNEVL 162
>tr|Q8LBT1|Q8LBT1_ARATH Gda-1, putative OS=Arabidopsis thaliana PE=2 SV=1 Length = 296
Score = 45.8 bits (107), Expect = 0.002 Identities = 45/171 (26%), Positives = 64/171 (37%), Gaps = 44/171 (25%) Frame = +1
Query: 235 SFWSLNDNNRRSPTEMQEDQSWKVAATKLAFADQMRLKFDRSRS-----------DAKVV 381 SFW L D R T ED W ATKLA +Q R+K +R + ++ Sbjct: 3 SFWQLGDE-LRGQTRASEDHKWSTVATKLA--EQTRMKGERMNNLDLSKGYTEFRPSEKF 59
Query: 382 APHEKNIKQAKGRSKGRAEDMLKGE--------GFNQKFSDGDLRYGDLGQKLGAGNMST 537 + E N+ G+ + + G+ N F D + G GNM Sbjct: 60 SFQENNLNFNMLNLDGKFGESIMGKTSMQSNVYNMNTVFQKNDFKSG--------GNMKV 111
Query: 538 SQIVGS-------------------------ADKRFKSLPPAETLPRHETL 615 ++ G+ DKRFK+LP +ETLPR+E L Sbjct: 112 NKYNGNIVANKEMSNNKHNNNCNDNGNMNLAVDKRFKTLPASETLPRNEVL 162
>tr|A9PHN9|A9PHN9_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 390
Score = 39.3 bits (90), Expect = 0.19 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 7/46 (15%) Frame = +1
Query: 499 DLGQKLGAGNMS-------TSQIVGSADKRFKSLPPAETLPRHETL 615 D G K G N + + +ADKRFK+LPP+E+LPR+ET+ Sbjct: 212 DFGSKSGKKNSNKKSNSNDNNDNKSAADKRFKTLPPSESLPRYETI 257
>tr|A9RF70|A9RF70_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_113222 PE=4 SV=1 Length = 174
Score = 38.5 bits (88), Expect = 0.32 Identities = 18/25 (72%), Positives = 20/25 (80%) Frame = +1
Query: 541 QIVGSADKRFKSLPPAETLPRHETL 615 QI + DKRFKSLPPAE LPR+ TL Sbjct: 12 QITVNPDKRFKSLPPAEILPRNTTL 36
>tr|B6T8N2|B6T8N2_MAIZE Gda-1 OS=Zea mays PE=2 SV=1 Length = 301
Score = 38.1 bits (87), Expect = 0.42 Identities = 42/167 (25%), Positives = 63/167 (37%), Gaps = 40/167 (23%) Frame = +1
Query: 235 SFWSLNDNNRRSPTEMQEDQSWKVAATKLAF-----ADQMRLKFDRSRSDAKVVAPHEKN 399 S W L D R P ++ ED+ W + +KLA ++M D + D H+ + Sbjct: 3 SLWHLGDELRGQP-KVVEDRQWSLMTSKLAEITRSKGERMNTVPDAKQWDKTSYQLHDDS 61
Query: 400 ---------------IKQA-------KGRSKGRAEDMLKGEGFNQKFSDGDLRYG----- 498 + +A +G + LKG N + + G Sbjct: 62 RMGHINLGLMNLDLKMNEAAAMKLPFRGMPYNMNQMYLKGSNANSNVNAFKMNVGVNKYS 121
Query: 499 ------DLGQKLGAGNMSTSQIVGS--ADKRFKSLPPAETLPRHETL 615 D K GN + G+ ADKRFK+LP +E LPR+E L Sbjct: 122 NSPNGKDANGKNNGGNNNNGSANGTSVADKRFKTLPTSEMLPRNEVL 168
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