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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK952635
Clone id TST38A01NGRL0014_K03
Library
Length 578
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0014_K03. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
ATGAGATTAATCAGTTCTGTAGTGCGCATAGTTTGCAGGAAGTGTATATAGACAAGTTTG
ATCAGGTAAGAAAGTCTTTTTATTGAATTAGCTCGTGAATTTATTACTTGTTGAAGGCAT
TTAAATGTGGAACGATGGCAAGGAAAAGAGAAGCAAAGGATATGCATCATTAAGAGGGAG
AATCACTGGAACCTAGAAAGTGACTAAAAAGGAATATAACACAATTATAATCACATTCAG
ATCACTATCTCCATTGGGATCTTAGACGTGAACCGTGATCTATGATTGCTCACGGTAGCA
GACGAGATCATCACCCAATTCACCTTTTCCTGCTGCATGTTTGACATGGTATCAGGTCCA
CGACGAGTTCTCCTGTCGGATTGGTTATCTGTGCGAGTCTTTCGTGCTGAAATTTTGCGA
TGAAAAGAGACGGTTTGCTGTTTTTCAGTTGTATGTTATCTATTTGGTTCATAGTTACTT
AGAATGGGAAATCGGAACAGGAAACATGGAACAATAGTGGCCCATGGGCATGAAATGCCA
TTTCCTATTACGGATACTCACGTTTGAAACACGGAACG
■■Homology search results ■■ -
sp_hit_id Q5RCJ9
Definition sp|Q5RCJ9|ERLN1_PONAB Erlin-1 OS=Pongo abelii
Align length 22
Score (bit) 42.7
E-value 0.001
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952635|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0014_K03, 5'
         (561 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5RCJ9|ERLN1_PONAB Erlin-1 OS=Pongo abelii GN=ERLIN1 PE=2 SV=2      43   0.001
sp|Q91X78|ERLN1_MOUSE Erlin-1 OS=Mus musculus GN=Erlin1 PE=2 SV=1      43   0.001
sp|O75477|ERLN1_HUMAN Erlin-1 OS=Homo sapiens GN=ERLIN1 PE=1 SV=1      43   0.001
sp|Q5R7C5|ERLN2_PONAB Erlin-2 OS=Pongo abelii GN=ERLIN2 PE=2 SV=1      41   0.004
sp|Q8BFZ9|ERLN2_MOUSE Erlin-2 OS=Mus musculus GN=Erlin2 PE=1 SV=1      41   0.004
sp|O94905|ERLN2_HUMAN Erlin-2 OS=Homo sapiens GN=ERLIN2 PE=1 SV=1      41   0.004
sp|Q1RMU4|ERLN2_BOVIN Erlin-2 OS=Bos taurus GN=ERLIN2 PE=2 SV=1        41   0.004
sp|Q9UUE7|CDC73_SCHPO Cell division control protein 73 OS=Schizo...    30   6.2  

>sp|Q5RCJ9|ERLN1_PONAB Erlin-1 OS=Pongo abelii GN=ERLIN1 PE=2 SV=2
          Length = 346

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 17/22 (77%), Positives = 21/22 (95%)
 Frame = +3

Query: 3   EINQFCSAHSLQEVYIDKFDQV 68
           E+NQFCSAH+LQEVYI+ FDQ+
Sbjct: 123 ELNQFCSAHTLQEVYIELFDQI 144


>sp|Q91X78|ERLN1_MOUSE Erlin-1 OS=Mus musculus GN=Erlin1 PE=2 SV=1
          Length = 346

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 17/22 (77%), Positives = 21/22 (95%)
 Frame = +3

Query: 3   EINQFCSAHSLQEVYIDKFDQV 68
           E+NQFCSAH+LQEVYI+ FDQ+
Sbjct: 123 ELNQFCSAHTLQEVYIELFDQI 144


>sp|O75477|ERLN1_HUMAN Erlin-1 OS=Homo sapiens GN=ERLIN1 PE=1 SV=1
          Length = 346

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 17/22 (77%), Positives = 21/22 (95%)
 Frame = +3

Query: 3   EINQFCSAHSLQEVYIDKFDQV 68
           E+NQFCSAH+LQEVYI+ FDQ+
Sbjct: 123 ELNQFCSAHTLQEVYIELFDQI 144


>sp|Q5R7C5|ERLN2_PONAB Erlin-2 OS=Pongo abelii GN=ERLIN2 PE=2 SV=1
          Length = 339

 Score = 41.2 bits (95), Expect = 0.004
 Identities = 16/22 (72%), Positives = 20/22 (90%)
 Frame = +3

Query: 3   EINQFCSAHSLQEVYIDKFDQV 68
           E+NQFCS H+LQEVYI+ FDQ+
Sbjct: 123 ELNQFCSVHTLQEVYIELFDQI 144


>sp|Q8BFZ9|ERLN2_MOUSE Erlin-2 OS=Mus musculus GN=Erlin2 PE=1 SV=1
          Length = 340

 Score = 41.2 bits (95), Expect = 0.004
 Identities = 16/22 (72%), Positives = 20/22 (90%)
 Frame = +3

Query: 3   EINQFCSAHSLQEVYIDKFDQV 68
           E+NQFCS H+LQEVYI+ FDQ+
Sbjct: 123 ELNQFCSVHTLQEVYIELFDQI 144


>sp|O94905|ERLN2_HUMAN Erlin-2 OS=Homo sapiens GN=ERLIN2 PE=1 SV=1
          Length = 339

 Score = 41.2 bits (95), Expect = 0.004
 Identities = 16/22 (72%), Positives = 20/22 (90%)
 Frame = +3

Query: 3   EINQFCSAHSLQEVYIDKFDQV 68
           E+NQFCS H+LQEVYI+ FDQ+
Sbjct: 123 ELNQFCSVHTLQEVYIELFDQI 144


>sp|Q1RMU4|ERLN2_BOVIN Erlin-2 OS=Bos taurus GN=ERLIN2 PE=2 SV=1
          Length = 338

 Score = 41.2 bits (95), Expect = 0.004
 Identities = 16/22 (72%), Positives = 20/22 (90%)
 Frame = +3

Query: 3   EINQFCSAHSLQEVYIDKFDQV 68
           E+NQFCS H+LQEVYI+ FDQ+
Sbjct: 123 ELNQFCSVHTLQEVYIELFDQI 144


>sp|Q9UUE7|CDC73_SCHPO Cell division control protein 73
           OS=Schizosaccharomyces pombe GN=cdc73 PE=2 SV=1
          Length = 371

 Score = 30.4 bits (67), Expect = 6.2
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = -2

Query: 413 ISARKTRTDNQSDRRTRRGPDTMSNMQQEKVNWVMISSATVSNHRSRFTSKIPMEIV 243
           I   K + +  +D  T    D   + + E+VNW+  ++ TVSNH S      P++ +
Sbjct: 117 IGLEKPKPEGSTDAATSMDVDL--HKKSEEVNWLFENTRTVSNHNSVLHGIKPIDFI 171
tr_hit_id A9RZW1
Definition tr|A9RZW1|A9RZW1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 22
Score (bit) 46.2
E-value 0.001
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952635|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0014_K03, 5'
         (561 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RZW1|A9RZW1_PHYPA Predicted protein OS=Physcomitrella paten...    46   0.001
tr|A9RAY5|A9RAY5_PHYPA Predicted protein OS=Physcomitrella paten...    46   0.001
tr|B4FSS3|B4FSS3_MAIZE Putative uncharacterized protein OS=Zea m...    45   0.002
tr|A7P2G2|A7P2G2_VITVI Chromosome chr1 scaffold_5, whole genome ...    45   0.002
tr|Q6ATM4|Q6ATM4_ORYSJ cDNA clone:J033121P04, full insert sequen...    45   0.003
tr|Q0DR41|Q0DR41_ORYSJ Os03g0421400 protein (Fragment) OS=Oryza ...    45   0.003
tr|B8AK41|B8AK41_ORYSI Putative uncharacterized protein OS=Oryza...    45   0.003
tr|A3AJ76|A3AJ76_ORYSJ Putative uncharacterized protein OS=Oryza...    45   0.003
tr|Q70AI7|Q70AI7_WHEAT Putative integral membrane protein that r...    44   0.005
tr|Q9ZQ87|Q9ZQ87_ARATH Expressed protein (Putative uncharacteriz...    44   0.008
tr|Q84TE3|Q84TE3_ARATH At2g03510 OS=Arabidopsis thaliana PE=2 SV=1     44   0.008
tr|Q0WU28|Q0WU28_ARATH Putative uncharacterized protein At2g0351...    44   0.008
tr|A8NHP4|A8NHP4_BRUMA Putative uncharacterized protein OS=Brugi...    44   0.008
tr|Q5F3C5|Q5F3C5_CHICK Putative uncharacterized protein OS=Gallu...    43   0.013
tr|B1WBY7|B1WBY7_RAT ER lipid raft associated 1 (SPFH domain fam...    43   0.013
tr|B8XSJ1|B8XSJ1_PIG ER lipid raft-associated 1 OS=Sus scrofa GN...    43   0.013
tr|A5D9F3|A5D9F3_BOVIN SPFH domain family, member 1 OS=Bos tauru...    43   0.013
tr|A7T0H4|A7T0H4_NEMVE Predicted protein OS=Nematostella vectens...    43   0.013
tr|B4DPN7|B4DPN7_HUMAN cDNA FLJ57553, highly similar to SPFH dom...    43   0.013
tr|B2RDK6|B2RDK6_HUMAN cDNA, FLJ96656, highly similar to Homo sa...    43   0.013
tr|B0QZ43|B0QZ43_HUMAN ER lipid raft associated 1 (Fragment) OS=...    43   0.013
tr|A8X0H4|A8X0H4_CAEBR Putative uncharacterized protein OS=Caeno...    42   0.023
tr|Q28DX1|Q28DX1_XENTR SPFH domain family, member 1 (SPFH domain...    42   0.030
tr|A3QMC6|A3QMC6_CAEEL Protein C42C1.15, confirmed by transcript...    42   0.030
tr|Q6DKC0|Q6DKC0_XENLA MGC84282 protein OS=Xenopus laevis GN=MGC...    41   0.039
tr|Q5XH03|Q5XH03_XENLA LOC495100 protein OS=Xenopus laevis GN=er...    41   0.039
tr|Q4T1M1|Q4T1M1_TETNG Chromosome undetermined SCAF10543, whole ...    41   0.039
tr|Q4SA80|Q4SA80_TETNG Chromosome 12 SCAF14692, whole genome sho...    41   0.039
tr|Q28J34|Q28J34_XENTR SPFH domain family, member 2 (Putative un...    41   0.039
tr|B5DEH2|B5DEH2_RAT ER lipid raft associated 2 (SPFH domain fam...    41   0.039

>tr|A9RZW1|A9RZW1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_122055 PE=4 SV=1
          Length = 312

 Score = 46.2 bits (108), Expect = 0.001
 Identities = 19/22 (86%), Positives = 21/22 (95%)
 Frame = +3

Query: 3   EINQFCSAHSLQEVYIDKFDQV 68
           EINQFCS H+LQEVYIDKFDQ+
Sbjct: 111 EINQFCSGHTLQEVYIDKFDQI 132


>tr|A9RAY5|A9RAY5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_63697 PE=4 SV=1
          Length = 352

 Score = 46.2 bits (108), Expect = 0.001
 Identities = 19/22 (86%), Positives = 21/22 (95%)
 Frame = +3

Query: 3   EINQFCSAHSLQEVYIDKFDQV 68
           EINQFCS H+LQEVYIDKFDQ+
Sbjct: 151 EINQFCSCHTLQEVYIDKFDQI 172


>tr|B4FSS3|B4FSS3_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 371

 Score = 45.4 bits (106), Expect = 0.002
 Identities = 19/22 (86%), Positives = 21/22 (95%)
 Frame = +3

Query: 3   EINQFCSAHSLQEVYIDKFDQV 68
           EINQFCSAHSLQ+VYID FDQ+
Sbjct: 168 EINQFCSAHSLQQVYIDMFDQI 189


>tr|A7P2G2|A7P2G2_VITVI Chromosome chr1 scaffold_5, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00030044001
           PE=4 SV=1
          Length = 296

 Score = 45.4 bits (106), Expect = 0.002
 Identities = 19/22 (86%), Positives = 21/22 (95%)
 Frame = +3

Query: 3   EINQFCSAHSLQEVYIDKFDQV 68
           EINQFCSAHSLQ+VYID FDQ+
Sbjct: 91  EINQFCSAHSLQQVYIDMFDQI 112


>tr|Q6ATM4|Q6ATM4_ORYSJ cDNA clone:J033121P04, full insert sequence
           OS=Oryza sativa subsp. japonica GN=OSJNBb0021K20.18 PE=2
           SV=1
          Length = 374

 Score = 45.1 bits (105), Expect = 0.003
 Identities = 19/22 (86%), Positives = 21/22 (95%)
 Frame = +3

Query: 3   EINQFCSAHSLQEVYIDKFDQV 68
           EINQFCSAHSLQ+VYID FDQ+
Sbjct: 171 EINQFCSAHSLQQVYIDLFDQI 192


>tr|Q0DR41|Q0DR41_ORYSJ Os03g0421400 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os03g0421400 PE=4 SV=1
          Length = 266

 Score = 45.1 bits (105), Expect = 0.003
 Identities = 19/22 (86%), Positives = 21/22 (95%)
 Frame = +3

Query: 3   EINQFCSAHSLQEVYIDKFDQV 68
           EINQFCSAHSLQ+VYID FDQ+
Sbjct: 63  EINQFCSAHSLQQVYIDLFDQI 84


>tr|B8AK41|B8AK41_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_12095 PE=4 SV=1
          Length = 374

 Score = 45.1 bits (105), Expect = 0.003
 Identities = 19/22 (86%), Positives = 21/22 (95%)
 Frame = +3

Query: 3   EINQFCSAHSLQEVYIDKFDQV 68
           EINQFCSAHSLQ+VYID FDQ+
Sbjct: 171 EINQFCSAHSLQQVYIDLFDQI 192


>tr|A3AJ76|A3AJ76_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_010848 PE=4 SV=1
          Length = 449

 Score = 45.1 bits (105), Expect = 0.003
 Identities = 19/22 (86%), Positives = 21/22 (95%)
 Frame = +3

Query: 3   EINQFCSAHSLQEVYIDKFDQV 68
           EINQFCSAHSLQ+VYID FDQ+
Sbjct: 261 EINQFCSAHSLQQVYIDLFDQI 282


>tr|Q70AI7|Q70AI7_WHEAT Putative integral membrane protein that
           regulates cation conductance (Fragment) OS=Triticum
           aestivum GN=at2G03510 PE=2 SV=1
          Length = 215

 Score = 44.3 bits (103), Expect = 0.005
 Identities = 19/21 (90%), Positives = 20/21 (95%)
 Frame = +3

Query: 3   EINQFCSAHSLQEVYIDKFDQ 65
           EINQFCSAHSLQ+VYID FDQ
Sbjct: 108 EINQFCSAHSLQQVYIDMFDQ 128


>tr|Q9ZQ87|Q9ZQ87_ARATH Expressed protein (Putative uncharacterized
           protein) OS=Arabidopsis thaliana GN=At2g03510 PE=2 SV=2
          Length = 356

 Score = 43.5 bits (101), Expect = 0.008
 Identities = 18/22 (81%), Positives = 21/22 (95%)
 Frame = +3

Query: 3   EINQFCSAHSLQEVYIDKFDQV 68
           EINQFCS+HSLQ+VYID FDQ+
Sbjct: 147 EINQFCSSHSLQQVYIDIFDQI 168