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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK952669
Clone id TST38A01NGRL0014_L15
Library
Length 612
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0014_L15. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CAGACACACACACACAGTACACACACGCGCATGCACTCCCAAAATTTCGACACAGTAATC
ACTCCAACCTCATCGATCCATTCTGCTAATCACACAAAATCGCCCATAATTGGTCGGGCT
AATTTCAGCCACAATTCGCCTGCAAAATAACCTCCCGTTCCTTAATTTCACCCGAATTAC
CCATTATCTGTAGCTGATCAGCACACTTTTAGATTTTCCAATCATATTGTACCTATCATA
ATTAGCATTAAGGGCCCTTAATACATGGATCCCTTCACTCAGCTTCAATTCTCTGCATTT
GGTCGAGGCGCGGTCGAGGCGCGCTGCAATGGCAGCTGCTGACCAGCTTTGAGCTCCCAT
TCTCTGCTCATGAGCATAATATAGAAGCTCGGCAGCTCGTCCAACAAATGTGGCTTGCGT
GGAGAAGACGAGACATGAACAAATTATTTGCAGGGCCGCCACACCCTCATCAGAAAATGA
TGATCAGCCAGGGACGATGCGAATTTTCTTGTGGAGATAATGTCGCTTAATGCAGCTGCT
GCCTCTGGCATCACTAGGGCTTGCATGGAGTAGAGGAGATATCAACAAATTACTTGCTGG
CACCACATCGGA
■■Homology search results ■■ -
sp_hit_id Q9BG98
Definition sp|Q9BG98|KCMA1_RABIT Calcium-activated potassium channel subunit alpha-1 OS=Oryctolagus cuniculus
Align length 57
Score (bit) 31.2
E-value 4.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952669|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0014_L15, 5'
         (612 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9BG98|KCMA1_RABIT Calcium-activated potassium channel subuni...    31   4.4  
sp|Q5RAV8|M6PBP_PONAB Mannose-6-phosphate receptor-binding prote...    30   9.7  
sp|O60664|M6PBP_HUMAN Mannose-6-phosphate receptor-binding prote...    30   9.7  

>sp|Q9BG98|KCMA1_RABIT Calcium-activated potassium channel subunit
           alpha-1 OS=Oryctolagus cuniculus GN=KCNMA1 PE=2 SV=1
          Length = 1179

 Score = 31.2 bits (69), Expect = 4.4
 Identities = 21/57 (36%), Positives = 29/57 (50%)
 Frame = -3

Query: 466 GCGGPANNLFMSRLLHASHICWTSCRASILCS*AENGSSKLVSSCHCSAPRPRLDQM 296
           G GG  + L MS  +HASH+   S  AS   S + + SS   SS   S   P++D +
Sbjct: 17  GGGGGGSGLRMSSNIHASHL---SLDASSSSSSSSSSSSSSSSSSSSSVHEPKMDAL 70


>sp|Q5RAV8|M6PBP_PONAB Mannose-6-phosphate receptor-binding protein
           1 OS=Pongo abelii GN=M6PRBP1 PE=2 SV=1
          Length = 434

 Score = 30.0 bits (66), Expect = 9.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 381 IEARQLVQQMWLAWRRRDMNKLFAGPPHPHQ 473
           +E ++ + QMWL+W ++ +      PP P Q
Sbjct: 291 VEGQEKLHQMWLSWNQKQLQGPEKEPPKPEQ 321


>sp|O60664|M6PBP_HUMAN Mannose-6-phosphate receptor-binding protein
           1 OS=Homo sapiens GN=M6PRBP1 PE=1 SV=2
          Length = 434

 Score = 30.0 bits (66), Expect = 9.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 381 IEARQLVQQMWLAWRRRDMNKLFAGPPHPHQ 473
           +E ++ + QMWL+W ++ +      PP P Q
Sbjct: 291 VEGQEKLHQMWLSWNQKQLQGPEKEPPKPEQ 321
tr_hit_id Q4FR26
Definition tr|Q4FR26|Q4FR26_PSYA2 Putative sugar efflux transporter, Major facilitator superfamily (MFS) OS=Psychrobacter arcticus (strain DSM 17307 / 273-4)
Align length 68
Score (bit) 33.9
E-value 7.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952669|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0014_L15, 5'
         (612 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4FR26|Q4FR26_PSYA2 Putative sugar efflux transporter, Major ...    34   7.6  
tr|Q1Q9B7|Q1Q9B7_PSYCK Major facilitator superfamily MFS_1 OS=Ps...    34   7.6  

>tr|Q4FR26|Q4FR26_PSYA2 Putative sugar efflux transporter, Major
           facilitator superfamily (MFS) OS=Psychrobacter arcticus
           (strain DSM 17307 / 273-4) GN=Psyc_1684 PE=4 SV=1
          Length = 454

 Score = 33.9 bits (76), Expect = 7.6
 Identities = 20/68 (29%), Positives = 32/68 (47%)
 Frame = +3

Query: 252 GPLIHGSLHSASILCIWSRRGRGALQWQLLTSFELPFSAHEHNIEARQLVQQMWLAWRRR 431
           GPL+ GSL  + +   W   G   L   LL     P    +HN++ + + QQ+    +  
Sbjct: 150 GPLLVGSLGISGLF--WLTAGFAVLAMLLLLFVPTPLRVLKHNLDNKSIGQQLATVLKIG 207

Query: 432 DMNKLFAG 455
           D+N+L  G
Sbjct: 208 DLNRLHIG 215


>tr|Q1Q9B7|Q1Q9B7_PSYCK Major facilitator superfamily MFS_1
           OS=Psychrobacter cryohalolentis (strain K5)
           GN=Pcryo_1959 PE=4 SV=1
          Length = 454

 Score = 33.9 bits (76), Expect = 7.6
 Identities = 20/68 (29%), Positives = 32/68 (47%)
 Frame = +3

Query: 252 GPLIHGSLHSASILCIWSRRGRGALQWQLLTSFELPFSAHEHNIEARQLVQQMWLAWRRR 431
           GPL+ GSL  + +   W   G   L   LL     P    +HN++ + + QQ+    +  
Sbjct: 150 GPLLVGSLGISGLF--WLTAGFAVLAMLLLLFVPTPLRVLKHNLDNKSIGQQLATVLKIG 207

Query: 432 DMNKLFAG 455
           D+N+L  G
Sbjct: 208 DLNRLHIG 215