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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK952676
Clone id TST38A01NGRL0014_L22
Library
Length 355
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0014_L22. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GTTCAAGGTTGTGAAGGTATCTGGAGTGTCTCTCCTTGCCCTTTTCAAGGAAAAGAAGGA
GAAACCAAGGTCTTAAGTTTTGAGAGGATATGTGAAGGTCCAGCAGGACTTGTACCTTAT
TGATTAGCTTCCTGGGAATGTTCAGGAGAGATCATCACGAAAATTTTGTTAATCTCATGA
CATGAGCCAGCTGCTTCTTTTCGATGCATGCGTTTCCTTCTTTTGAACCATGGGATGGAG
AATCATTGTGTCAGTGAAGGTAAAGATACTTTGTCTGTCCTCATTTCTTTACTGATATAG
AAGGGATAGTTTCATTGCTTAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P46297
Definition sp|P46297|RS23_FRAAN 40S ribosomal protein S23 OS=Fragaria ananassa
Align length 24
Score (bit) 48.5
E-value 1.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952676|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0014_L22, 5'
         (322 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P46297|RS23_FRAAN 40S ribosomal protein S23 OS=Fragaria anana...    49   1e-05
sp|Q9M5Z9|RS23_EUPES 40S ribosomal protein S23 OS=Euphorbia esul...    49   1e-05
sp|P49201|RS232_ARATH 40S ribosomal protein S23-2 OS=Arabidopsis...    49   1e-05
sp|Q9SF35|RS231_ARATH 40S ribosomal protein S23-1 OS=Arabidopsis...    49   1e-05
sp|P32827|RS23_YEAST 40S ribosomal protein S23 OS=Saccharomyces ...    47   4e-05
sp|Q6YIA2|RS23_SACCA 40S ribosomal protein S23 OS=Saccharomyces ...    47   4e-05
sp|Q6YIA3|RS23_SACBA 40S ribosomal protein S23 OS=Saccharomyces ...    47   4e-05
sp|Q6FLA8|RS23_CANGA 40S ribosomal protein S23 OS=Candida glabra...    47   4e-05
sp|Q9HE74|RS23_NEUCR 40S ribosomal protein S23 OS=Neurospora cra...    45   1e-04
sp|Q873W8|RS23_ASPFU 40S ribosomal protein S23 OS=Aspergillus fu...    45   1e-04
sp|Q962Q7|RS23_SPOFR 40S ribosomal protein S23 OS=Spodoptera fru...    43   5e-04
sp|Q6EV23|RS23_PAPDA 40S ribosomal protein S23 OS=Papilio dardan...    43   5e-04
sp|Q8T3U2|RS23_DROME 40S ribosomal protein S23 OS=Drosophila mel...    43   5e-04
sp|Q86FP7|RS23_DERVA 40S ribosomal protein S23 OS=Dermacentor va...    43   5e-04
sp|Q9GRJ3|RS23_LUMRU 40S ribosomal protein S23 OS=Lumbricus rube...    42   0.001
sp|P79057|RS23_SCHPO 40S ribosomal protein S23 OS=Schizosaccharo...    40   0.004
sp|P62268|RS23_RAT 40S ribosomal protein S23 OS=Rattus norvegicu...    40   0.004
sp|Q6SA96|RS23_PIG 40S ribosomal protein S23 OS=Sus scrofa GN=RP...    40   0.004
sp|P62267|RS23_MOUSE 40S ribosomal protein S23 OS=Mus musculus G...    40   0.004
sp|Q90YQ1|RS23_ICTPU 40S ribosomal protein S23 OS=Ictalurus punc...    40   0.004
sp|P62266|RS23_HUMAN 40S ribosomal protein S23 OS=Homo sapiens G...    40   0.004
sp|P62298|RS23_CHILA 40S ribosomal protein S23 OS=Chinchilla lan...    40   0.004
sp|Q3T199|RS23_BOVIN 40S ribosomal protein S23 OS=Bos taurus GN=...    40   0.004
sp|Q19877|RS23_CAEEL 40S ribosomal protein S23 OS=Caenorhabditis...    39   0.010
sp|P90707|RS23_BRUMA 40S ribosomal protein S23 OS=Brugia malayi ...    39   0.010
sp|Q8I7D5|RS23_CIOIN 40S ribosomal protein S23 OS=Ciona intestin...    36   0.067
sp|P06147|RS12_TETTH 40S ribosomal protein S12 OS=Tetrahymena th...    35   0.15 
sp|Q9DFR4|RS23_GILMI 40S ribosomal protein S23 OS=Gillichthys mi...    34   0.26 
sp|A3MXZ4|RS12_PYRCJ 30S ribosomal protein S12P OS=Pyrobaculum c...    34   0.26 
sp|A1RSE4|RS12_PYRIL 30S ribosomal protein S12P OS=Pyrobaculum i...    33   0.33 

>sp|P46297|RS23_FRAAN 40S ribosomal protein S23 OS=Fragaria ananassa
           GN=RPS23 PE=2 SV=1
          Length = 142

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = +2

Query: 2   FKVVKVSGVSLLALFKEKKEKPRS 73
           FKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 119 FKVVKVSGVSLLALFKEKKEKPRS 142


>sp|Q9M5Z9|RS23_EUPES 40S ribosomal protein S23 OS=Euphorbia esula
           GN=RPS23 PE=2 SV=1
          Length = 142

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = +2

Query: 2   FKVVKVSGVSLLALFKEKKEKPRS 73
           FKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 119 FKVVKVSGVSLLALFKEKKEKPRS 142


>sp|P49201|RS232_ARATH 40S ribosomal protein S23-2 OS=Arabidopsis
           thaliana GN=RPS23B PE=2 SV=2
          Length = 142

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = +2

Query: 2   FKVVKVSGVSLLALFKEKKEKPRS 73
           FKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 119 FKVVKVSGVSLLALFKEKKEKPRS 142


>sp|Q9SF35|RS231_ARATH 40S ribosomal protein S23-1 OS=Arabidopsis
           thaliana GN=RPS23A PE=2 SV=2
          Length = 142

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = +2

Query: 2   FKVVKVSGVSLLALFKEKKEKPRS 73
           FKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 119 FKVVKVSGVSLLALFKEKKEKPRS 142


>sp|P32827|RS23_YEAST 40S ribosomal protein S23 OS=Saccharomyces
           cerevisiae GN=RPS23A PE=1 SV=1
          Length = 145

 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 23/24 (95%), Positives = 24/24 (100%)
 Frame = +2

Query: 2   FKVVKVSGVSLLALFKEKKEKPRS 73
           FKVVKVSGVSLLAL+KEKKEKPRS
Sbjct: 122 FKVVKVSGVSLLALWKEKKEKPRS 145


>sp|Q6YIA2|RS23_SACCA 40S ribosomal protein S23 OS=Saccharomyces
           castellii GN=RPS23A PE=3 SV=1
          Length = 145

 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 23/24 (95%), Positives = 24/24 (100%)
 Frame = +2

Query: 2   FKVVKVSGVSLLALFKEKKEKPRS 73
           FKVVKVSGVSLLAL+KEKKEKPRS
Sbjct: 122 FKVVKVSGVSLLALWKEKKEKPRS 145


>sp|Q6YIA3|RS23_SACBA 40S ribosomal protein S23 OS=Saccharomyces
           bayanus GN=RPS23A PE=3 SV=1
          Length = 145

 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 23/24 (95%), Positives = 24/24 (100%)
 Frame = +2

Query: 2   FKVVKVSGVSLLALFKEKKEKPRS 73
           FKVVKVSGVSLLAL+KEKKEKPRS
Sbjct: 122 FKVVKVSGVSLLALWKEKKEKPRS 145


>sp|Q6FLA8|RS23_CANGA 40S ribosomal protein S23 OS=Candida glabrata
           GN=RPS23 PE=3 SV=1
          Length = 145

 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 23/24 (95%), Positives = 24/24 (100%)
 Frame = +2

Query: 2   FKVVKVSGVSLLALFKEKKEKPRS 73
           FKVVKVSGVSLLAL+KEKKEKPRS
Sbjct: 122 FKVVKVSGVSLLALWKEKKEKPRS 145


>sp|Q9HE74|RS23_NEUCR 40S ribosomal protein S23 OS=Neurospora crassa
           GN=rps-23 PE=3 SV=1
          Length = 145

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 22/24 (91%), Positives = 23/24 (95%)
 Frame = +2

Query: 2   FKVVKVSGVSLLALFKEKKEKPRS 73
           FKVVKVSGV LLAL+KEKKEKPRS
Sbjct: 122 FKVVKVSGVGLLALWKEKKEKPRS 145


>sp|Q873W8|RS23_ASPFU 40S ribosomal protein S23 OS=Aspergillus
           fumigatus GN=rps23 PE=2 SV=1
          Length = 145

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 22/24 (91%), Positives = 23/24 (95%)
 Frame = +2

Query: 2   FKVVKVSGVSLLALFKEKKEKPRS 73
           FKVVKVSGV LLAL+KEKKEKPRS
Sbjct: 122 FKVVKVSGVGLLALWKEKKEKPRS 145
tr_hit_id Q8VYX8
Definition tr|Q8VYX8|Q8VYX8_PEA Ultraviolet-B-inducible ribosomal protein (Fragment) OS=Pisum sativum
Align length 24
Score (bit) 48.5
E-value 0.0002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952676|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0014_L22, 5'
         (322 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8VYX8|Q8VYX8_PEA Ultraviolet-B-inducible ribosomal protein (...    49   2e-04
tr|Q8L4F2|Q8L4F2_ORYSJ Os03g0818400 protein OS=Oryza sativa subs...    49   2e-04
tr|Q8H6J0|Q8H6J0_MAIZE Putative 40S ribosomal protein OS=Zea may...    49   2e-04
tr|Q677G5|Q677G5_HYAOR 40S ribosomal protein S23 (Fragment) OS=H...    49   2e-04
tr|Q5YJP7|Q5YJP7_HYAOR 40S ribosomal protein S23 (Fragment) OS=H...    49   2e-04
tr|Q38HT5|Q38HT5_SOLTU Putative uncharacterized protein OS=Solan...    49   2e-04
tr|Q2Q9T1|Q2Q9T1_PICMA 40S ribosomal protein (Fragment) OS=Picea...    49   2e-04
tr|Q1H5G2|Q1H5G2_ARATH At3g09680 OS=Arabidopsis thaliana PE=2 SV=1     49   2e-04
tr|Q0JHZ3|Q0JHZ3_ORYSJ Os01g0834600 protein (Fragment) OS=Oryza ...    49   2e-04
tr|B8LKM8|B8LKM8_PICSI Putative uncharacterized protein OS=Picea...    49   2e-04
tr|B7FHD2|B7FHD2_MEDTR Putative uncharacterized protein OS=Medic...    49   2e-04
tr|B6TI93|B6TI93_MAIZE 40S ribosomal protein S23 OS=Zea mays PE=...    49   2e-04
tr|B6T6W0|B6T6W0_MAIZE 40S ribosomal protein S23 OS=Zea mays PE=...    49   2e-04
tr|B4FMD3|B4FMD3_MAIZE Putative uncharacterized protein OS=Zea m...    49   2e-04
tr|B4FBY5|B4FBY5_MAIZE 40S ribosomal protein S23 OS=Zea mays PE=...    49   2e-04
tr|B3TLT8|B3TLT8_ELAGV 40S ribosomal protein S23 OS=Elaeis guine...    49   2e-04
tr|B3TLT7|B3TLT7_ELAGV 40S ribosomal protein S23 OS=Elaeis guine...    49   2e-04
tr|A9SB19|A9SB19_PHYPA Predicted protein OS=Physcomitrella paten...    49   2e-04
tr|A9PBK6|A9PBK6_POPTR Putative uncharacterized protein OS=Popul...    49   2e-04
tr|A7PSZ0|A7PSZ0_VITVI Chromosome chr8 scaffold_29, whole genome...    49   2e-04
tr|A5BX16|A5BX16_VITVI Putative uncharacterized protein OS=Vitis...    49   2e-04
tr|A2ZZB2|A2ZZB2_ORYSJ Putative uncharacterized protein OS=Oryza...    49   2e-04
tr|A2WWQ4|A2WWQ4_ORYSI Putative uncharacterized protein OS=Oryza...    49   2e-04
tr|Q4UB42|Q4UB42_THEAN 40s ribosomal protein s23, putative OS=Th...    47   4e-04
tr|Q4MYU6|Q4MYU6_THEPA 40S ribosomal protein S23, putative OS=Th...    47   4e-04
tr|Q7YY06|Q7YY06_CRYPV Ribosomal protein S23 OS=Cryptosporidium ...    47   5e-04
tr|B6ADS5|B6ADS5_9CRYT 40S ribosomal protein S23, putative OS=Cr...    47   5e-04
tr|A3FPT1|A3FPT1_CRYPV Ribosomal protein S23 (Fragment) OS=Crypt...    47   5e-04
tr|Q875Q2|Q875Q2_SACKL RPS23 OS=Saccharomyces kluyveri PE=3 SV=1       47   6e-04
tr|Q875M3|Q875M3_KLULA KLLA0B11231p OS=Kluyveromyces lactis GN=K...    47   6e-04

>tr|Q8VYX8|Q8VYX8_PEA Ultraviolet-B-inducible ribosomal protein
           (Fragment) OS=Pisum sativum PE=2 SV=1
          Length = 78

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = +2

Query: 2   FKVVKVSGVSLLALFKEKKEKPRS 73
           FKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 55  FKVVKVSGVSLLALFKEKKEKPRS 78


>tr|Q8L4F2|Q8L4F2_ORYSJ Os03g0818400 protein OS=Oryza sativa subsp.
           japonica GN=P0460C04.38 PE=2 SV=1
          Length = 142

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = +2

Query: 2   FKVVKVSGVSLLALFKEKKEKPRS 73
           FKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 119 FKVVKVSGVSLLALFKEKKEKPRS 142


>tr|Q8H6J0|Q8H6J0_MAIZE Putative 40S ribosomal protein OS=Zea mays
           GN=ZMRS072.4 PE=4 SV=1
          Length = 309

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = +2

Query: 2   FKVVKVSGVSLLALFKEKKEKPRS 73
           FKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 246 FKVVKVSGVSLLALFKEKKEKPRS 269


>tr|Q677G5|Q677G5_HYAOR 40S ribosomal protein S23 (Fragment)
           OS=Hyacinthus orientalis GN=RPS23 PE=2 SV=1
          Length = 71

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = +2

Query: 2   FKVVKVSGVSLLALFKEKKEKPRS 73
           FKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 48  FKVVKVSGVSLLALFKEKKEKPRS 71


>tr|Q5YJP7|Q5YJP7_HYAOR 40S ribosomal protein S23 (Fragment)
           OS=Hyacinthus orientalis PE=2 SV=1
          Length = 71

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = +2

Query: 2   FKVVKVSGVSLLALFKEKKEKPRS 73
           FKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 48  FKVVKVSGVSLLALFKEKKEKPRS 71


>tr|Q38HT5|Q38HT5_SOLTU Putative uncharacterized protein OS=Solanum
           tuberosum PE=2 SV=1
          Length = 142

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = +2

Query: 2   FKVVKVSGVSLLALFKEKKEKPRS 73
           FKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 119 FKVVKVSGVSLLALFKEKKEKPRS 142


>tr|Q2Q9T1|Q2Q9T1_PICMA 40S ribosomal protein (Fragment) OS=Picea
           mariana PE=4 SV=1
          Length = 82

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = +2

Query: 2   FKVVKVSGVSLLALFKEKKEKPRS 73
           FKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 59  FKVVKVSGVSLLALFKEKKEKPRS 82


>tr|Q1H5G2|Q1H5G2_ARATH At3g09680 OS=Arabidopsis thaliana PE=2 SV=1
          Length = 142

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = +2

Query: 2   FKVVKVSGVSLLALFKEKKEKPRS 73
           FKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 119 FKVVKVSGVSLLALFKEKKEKPRS 142


>tr|Q0JHZ3|Q0JHZ3_ORYSJ Os01g0834600 protein (Fragment) OS=Oryza
          sativa subsp. japonica GN=Os01g0834600 PE=4 SV=1
          Length = 46

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = +2

Query: 2  FKVVKVSGVSLLALFKEKKEKPRS 73
          FKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 23 FKVVKVSGVSLLALFKEKKEKPRS 46


>tr|B8LKM8|B8LKM8_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 142

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = +2

Query: 2   FKVVKVSGVSLLALFKEKKEKPRS 73
           FKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 119 FKVVKVSGVSLLALFKEKKEKPRS 142