DK952684 |
Clone id |
TST38A01NGRL0014_M07 |
Library |
TST38 |
Length |
588 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0014_M07. 5' end sequence. |
Accession |
DK952684 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL1335Contig1 |
Sequence |
GGCCGCACAACTTTGTACAAGAAAGTTGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTCTCAGCTTATGGGTATCCGAGAGTAGTCCCTCGTCCGTCGTCTTTCTCTCTTCGC GTTCCATTCGTCGCCGCTCTGTGTATTTCACGTTTCGCGAATTTTATTGGAGTAGGAAGA GTAGGGGAGCAAGCACGCCATGGCCTGCCCTCTTTCTACTCTCCTCTCCCCATTGTGCAG CAGTGGAAACAGCAGCAGGCATGCGCGATTGTGCTTCTCCCAATCAACCTTTACATCTTC TCAACGCAGGTATCATTTCGAACCTTTTCATAGCGACAGCGGAAGAAGCAGGTGCTGCTT CCATGGTGGCGGGATGCTTGCAGTTCGGGCTAGCTTTGCAGAATTTGATAGTCACATAGA GGCAACCTCAAAATTCATTTCCACAGGTCTGCCCCAGCTTGTTGAAAAAGCTGAGGGCCT CCTTTACACCATTGCAGATGCTGCAGTTTCTACTGATGCCTCAGTGGCTGACACCGTGCA GACAACGAATCGGGATTGGCTAAGTGGACTTACAGATGGACTTGAAGG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q66AG7 |
Definition |
sp|Q66AG7|RNFD_YERPS Electron transport complex protein rnfD OS=Yersinia pseudotuberculosis |
Align length |
69 |
Score (bit) |
30.8 |
E-value |
4.1 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q92R50 |
Definition |
tr|Q92R50|Q92R50_RHIME Hypothetical transmembrane protein OS=Rhizobium meliloti |
Align length |
75 |
Score (bit) |
38.1 |
E-value |
0.27 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK952684|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0014_M07, 5' (523 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q92R50|Q92R50_RHIME Hypothetical transmembrane protein OS=Rhi... 38 0.27 tr|A6U7A5|A6U7A5_SINMW Putative uncharacterized protein OS=Sinor... 36 1.0 tr|A0C1A9|A0C1A9_PARTE Chromosome undetermined scaffold_141, who... 35 2.9 tr|A9T7T5|A9T7T5_PHYPA Predicted protein OS=Physcomitrella paten... 35 3.0 tr|B8LKE4|B8LKE4_PICSI Putative uncharacterized protein OS=Picea... 33 6.5 tr|B8LKB2|B8LKB2_PICSI Putative uncharacterized protein OS=Picea... 33 6.5 tr|A0D5N3|A0D5N3_PARTE Chromosome undetermined scaffold_39, whol... 33 6.5 tr|Q0DNE7|Q0DNE7_ORYSJ Os03g0757700 protein OS=Oryza sativa subs... 33 8.5
>tr|Q92R50|Q92R50_RHIME Hypothetical transmembrane protein OS=Rhizobium meliloti GN=R01069 PE=4 SV=1 Length = 214
Score = 38.1 bits (87), Expect = 0.27 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 3/75 (4%) Frame = +1
Query: 91 REFYWSRKSRGASTPWPALFLL---SSPHCAAVETAAGMRDCASPNQPLHLLNAGIISNL 261 R F+W RK + + AL +L SSPH AV AAG +P LH++ A ++++ Sbjct: 45 RAFFWPRKGLTRAPRYIALRILRLNSSPHSIAVGVAAGAASSLTPFFGLHIVLAVLLASA 104
Query: 262 FIATAEEAGAASMVA 306 F A +++A Sbjct: 105 FSGNLIAAAITTLLA 119
>tr|A6U7A5|A6U7A5_SINMW Putative uncharacterized protein OS=Sinorhizobium medicae (strain WSM419) GN=Smed_0679 PE=4 SV=1 Length = 210
Score = 36.2 bits (82), Expect = 1.0 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 3/73 (4%) Frame = +1
Query: 97 FYWSRKSRGASTPWPALFLL---SSPHCAAVETAAGMRDCASPNQPLHLLNAGIISNLFI 267 F+W RK + + AL +L SSPH AV AAG +P LH++ A ++++ F Sbjct: 43 FFWPRKGFTRAPRYIALRVLRLNSSPHAIAVGVAAGAASSLTPFFGLHIVLAVLLASAFS 102
Query: 268 ATAEEAGAASMVA 306 A +++A Sbjct: 103 GNLVAAAITTVLA 115
>tr|A0C1A9|A0C1A9_PARTE Chromosome undetermined scaffold_141, whole genome shotgun sequence OS=Paramecium tetraurelia GN=GSPATT00034052001 PE=4 SV=1 Length = 425
Score = 34.7 bits (78), Expect = 2.9 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Frame = -3
Query: 440 CSICNGVKEALSFFNKLGQTCGNEF*G-CLYVTIKFCKASPNCKH 309 CSIC V F+N + TCG+ F G CL I+ K+ P C+H Sbjct: 21 CSICREV-----FYNPIRATCGHTFCGTCLVRWIQMKKSCPLCRH 60
>tr|A9T7T5|A9T7T5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_168544 PE=4 SV=1 Length = 911
Score = 34.7 bits (78), Expect = 3.0 Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 2/51 (3%) Frame = +2
Query: 17 PRVVPRPSSFSLRVPFVAALCISRFANFIGVGRVG--EQARHGLPSFYSPL 163 P V+ + FSL PFV + SRF F G+ R G EQARH L +S L Sbjct: 308 PLVLIQVLPFSLHRPFVLPVNESRFVTFCGLYRPGHLEQARHKLSLAFSAL 358
>tr|B8LKE4|B8LKE4_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 471
Score = 33.5 bits (75), Expect = 6.5 Identities = 18/46 (39%), Positives = 23/46 (50%) Frame = +3
Query: 384 LPQLVEKAEGLLYTIXXXXXXXXXXXXXXXQTTNRDWLSGLTDGLE 521 +P+LV +AEGLLYT+ Q TN W + DGLE Sbjct: 65 IPRLVSRAEGLLYTL-ADAAVATSDSVAPAQKTNGSWFGFIADGLE 109
>tr|B8LKB2|B8LKB2_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 471
Score = 33.5 bits (75), Expect = 6.5 Identities = 18/46 (39%), Positives = 23/46 (50%) Frame = +3
Query: 384 LPQLVEKAEGLLYTIXXXXXXXXXXXXXXXQTTNRDWLSGLTDGLE 521 +P+LV +AEGLLYT+ Q TN W + DGLE Sbjct: 65 IPRLVSRAEGLLYTL-ADAAVATSDSVAPAQKTNGSWFGFIADGLE 109
>tr|A0D5N3|A0D5N3_PARTE Chromosome undetermined scaffold_39, whole genome shotgun sequence OS=Paramecium tetraurelia GN=GSPATT00013780001 PE=4 SV=1 Length = 211
Score = 33.5 bits (75), Expect = 6.5 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Frame = -3
Query: 440 CSICNGVKEALSFFNKLGQTCGNEF*G-CLYVTIKFCKASPNCKH 309 CSIC V F+N + TCG+ F G CL I+ K+ P C+H Sbjct: 19 CSICREV-----FYNPIRATCGHTFCGTCLVRWIQQKKSCPLCRH 58
>tr|Q0DNE7|Q0DNE7_ORYSJ Os03g0757700 protein OS=Oryza sativa subsp. japonica GN=Os03g0757700 PE=4 SV=1 Length = 441
Score = 33.1 bits (74), Expect = 8.5 Identities = 23/68 (33%), Positives = 34/68 (50%) Frame = -3
Query: 317 CKHPATMEAAPASSAVAMKRFEMIPALRRCKG*LGEAQSRMPAAVSTAAQWGEESRKRAG 138 C+ PA+ APA+S+ + ALRRC G+++ + + WGE AG Sbjct: 335 CRAPASSSLAPAASSAGV-------ALRRCAD-AGDSEVAARSLTRRGSGWGE-----AG 381
Query: 137 HGVLAPLL 114 G L+PLL Sbjct: 382 AGHLSPLL 389
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