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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK952790
Clone id TST38A01NGRL0015_A22
Library
Length 416
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0015_A22. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
AAATTTGACATATTAATAATCTACAATTTTTATTCCCCCCGGAAATATAGAAAAATTGGG
TGAAATTTGAAAATATTTTGTATAACAGTTATAGTATGGATAATCAGTGACGTAATCGCC
TTTATCAATCAACTTCAAGCAATTGGTGTATGTTAATCTATTTTTGGAAATATTGAGTTT
AAGGATGAAATAACCTCCCTATTAGAACAAAGATATATCCCAAATAAGTATTTAAATGTT
ATTTCACGTCAATGTAAGAATTTGACCGATCTTAAAGCATATTGTGAGAGCGCAAGATAC
AGGGAATTTCTTAGACTTCCATACCACAAATTTAGAAAATAGAAAGAAATAAATCAAGGA
AAAAAAAAGAAGGGGGGGGGTTATAACTCCTTCCTACCCCCCCCCCCCCCCCCCCC
■■Homology search results ■■ -
sp_hit_id P58692
Definition sp|P58692|SYN_ANASP Asparaginyl-tRNA synthetase OS=Anabaena sp. (strain PCC 7120)
Align length 27
Score (bit) 30.0
E-value 3.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952790|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0015_A22, 5'
         (416 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P58692|SYN_ANASP Asparaginyl-tRNA synthetase OS=Anabaena sp. ...    30   3.8  
sp|B0K2V6|MTNA_THEPX Methylthioribose-1-phosphate isomerase OS=T...    30   4.9  
sp|B0K8S2|MTNA_THEP3 Methylthioribose-1-phosphate isomerase OS=T...    30   4.9  
sp|P0C6V1|R1A_CVMJH Replicase polyprotein 1a OS=Murine coronavir...    29   8.4  
sp|P0C6V0|R1A_CVMA5 Replicase polyprotein 1a OS=Murine coronavir...    29   8.4  
sp|P0C6U9|R1A_CVM2 Replicase polyprotein 1a OS=Murine coronaviru...    29   8.4  
sp|P0C6Y0|R1AB_CVMJH Replicase polyprotein 1ab OS=Murine coronav...    29   8.4  
sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronav...    29   8.4  
sp|P0C6X8|R1AB_CVM2 Replicase polyprotein 1ab OS=Murine coronavi...    29   8.4  

>sp|P58692|SYN_ANASP Asparaginyl-tRNA synthetase OS=Anabaena sp.
           (strain PCC 7120) GN=asnS PE=3 SV=1
          Length = 463

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 177 LNISKNRLTYTNCLKLIDKGDYVTDYP 97
           +N    RLTYT+ +KL++K D   +YP
Sbjct: 301 INNQFERLTYTDAIKLLEKADVKFEYP 327


>sp|B0K2V6|MTNA_THEPX Methylthioribose-1-phosphate isomerase
           OS=Thermoanaerobacter sp. (strain X514) GN=mtnA PE=3
           SV=1
          Length = 345

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +1

Query: 169 NIEFKDEITSLLEQRYIPNKY 231
           +IEFK+E+  L++QR +PN Y
Sbjct: 6   SIEFKNEVLYLIDQRKLPNSY 26


>sp|B0K8S2|MTNA_THEP3 Methylthioribose-1-phosphate isomerase
           OS=Thermoanaerobacter pseudethanolicus (strain ATCC
           33223 / 39E) GN=mtnA PE=3 SV=1
          Length = 345

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +1

Query: 169 NIEFKDEITSLLEQRYIPNKY 231
           +IEFK+E+  L++QR +PN Y
Sbjct: 6   SIEFKNEVLYLIDQRKLPNSY 26


>sp|P0C6V1|R1A_CVMJH Replicase polyprotein 1a OS=Murine coronavirus
            (strain JHM) GN=1a PE=1 SV=1
          Length = 4474

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
 Frame = +1

Query: 10   ILIIYNFYSPRKYRKIG*NLKIFCITVIVWIISDVIAFINQ----LQAIGVC*SIFGNIE 177
            I+++  +Y  +  R  G    +  I VIVW I+ ++ F+ Q    L  +  C   +  + 
Sbjct: 3132 IVVLAFYYLIKLKRAFGDYTSVVVINVIVWCINFLMLFVFQVYPTLSCLYACFYFYTTLY 3191

Query: 178  FKDEITSLLEQRYI 219
            F  EI+ ++  +++
Sbjct: 3192 FPSEISVVMHLQWL 3205


>sp|P0C6V0|R1A_CVMA5 Replicase polyprotein 1a OS=Murine coronavirus
            (strain A59) GN=1a PE=1 SV=1
          Length = 4468

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
 Frame = +1

Query: 10   ILIIYNFYSPRKYRKIG*NLKIFCITVIVWIISDVIAFINQ----LQAIGVC*SIFGNIE 177
            I+++  +Y  +  R  G    +  I VIVW I+ ++ F+ Q    L  +  C   +  + 
Sbjct: 3129 IVVLAFYYLIKLKRAFGDYTSVVVINVIVWCINFLMLFVFQVYPTLSCLYACFYFYTTLY 3188

Query: 178  FKDEITSLLEQRYI 219
            F  EI+ ++  +++
Sbjct: 3189 FPSEISVVMHLQWL 3202


>sp|P0C6U9|R1A_CVM2 Replicase polyprotein 1a OS=Murine coronavirus
            (strain 2) GN=1a PE=3 SV=1
          Length = 4416

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
 Frame = +1

Query: 10   ILIIYNFYSPRKYRKIG*NLKIFCITVIVWIISDVIAFINQ----LQAIGVC*SIFGNIE 177
            I+++  +Y  +  R  G    +  I VIVW I+ ++ F+ Q    L  +  C   +  + 
Sbjct: 3075 IVVLAFYYLIKLKRAFGDYTSVVVINVIVWCINFLMLFVFQVYPTLSCLYACFYFYTTLY 3134

Query: 178  FKDEITSLLEQRYI 219
            F  EI+ ++  +++
Sbjct: 3135 FPSEISVVMHLQWL 3148


>sp|P0C6Y0|R1AB_CVMJH Replicase polyprotein 1ab OS=Murine coronavirus
            (strain JHM) GN=rep PE=1 SV=1
          Length = 7180

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
 Frame = +1

Query: 10   ILIIYNFYSPRKYRKIG*NLKIFCITVIVWIISDVIAFINQ----LQAIGVC*SIFGNIE 177
            I+++  +Y  +  R  G    +  I VIVW I+ ++ F+ Q    L  +  C   +  + 
Sbjct: 3132 IVVLAFYYLIKLKRAFGDYTSVVVINVIVWCINFLMLFVFQVYPTLSCLYACFYFYTTLY 3191

Query: 178  FKDEITSLLEQRYI 219
            F  EI+ ++  +++
Sbjct: 3192 FPSEISVVMHLQWL 3205


>sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronavirus
            (strain A59) GN=rep PE=1 SV=1
          Length = 7176

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
 Frame = +1

Query: 10   ILIIYNFYSPRKYRKIG*NLKIFCITVIVWIISDVIAFINQ----LQAIGVC*SIFGNIE 177
            I+++  +Y  +  R  G    +  I VIVW I+ ++ F+ Q    L  +  C   +  + 
Sbjct: 3129 IVVLAFYYLIKLKRAFGDYTSVVVINVIVWCINFLMLFVFQVYPTLSCLYACFYFYTTLY 3188

Query: 178  FKDEITSLLEQRYI 219
            F  EI+ ++  +++
Sbjct: 3189 FPSEISVVMHLQWL 3202


>sp|P0C6X8|R1AB_CVM2 Replicase polyprotein 1ab OS=Murine coronavirus
            (strain 2) GN=rep PE=3 SV=1
          Length = 7124

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
 Frame = +1

Query: 10   ILIIYNFYSPRKYRKIG*NLKIFCITVIVWIISDVIAFINQ----LQAIGVC*SIFGNIE 177
            I+++  +Y  +  R  G    +  I VIVW I+ ++ F+ Q    L  +  C   +  + 
Sbjct: 3075 IVVLAFYYLIKLKRAFGDYTSVVVINVIVWCINFLMLFVFQVYPTLSCLYACFYFYTTLY 3134

Query: 178  FKDEITSLLEQRYI 219
            F  EI+ ++  +++
Sbjct: 3135 FPSEISVVMHLQWL 3148
tr_hit_id A7XCT5
Definition tr|A7XCT5|A7XCT5_9POXV VCCR8 OS=Tanapox virus
Align length 42
Score (bit) 32.7
E-value 9.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952790|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0015_A22, 5'
         (416 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7XCT5|A7XCT5_9POXV VCCR8 OS=Tanapox virus GN=145R PE=4 SV=1        33   9.2  
tr|A8ERA5|A8ERA5_ARCB4 Putative uncharacterized protein OS=Arcob...    33   9.2  
tr|Q08YN7|Q08YN7_STIAU FHA domain protein OS=Stigmatella auranti...    33   9.2  
tr|A2TWX1|A2TWX1_9FLAO Putative uncharacterized protein OS=Polar...    33   9.2  

>tr|A7XCT5|A7XCT5_9POXV VCCR8 OS=Tanapox virus GN=145R PE=4 SV=1
          Length = 323

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +1

Query: 25  NFYSPRKYRKIG*NLKIFCITVIVWIISDVIAFINQLQAIGV 150
           N  +  K R I   L +   TV++W+  +++ FIN LQ++G+
Sbjct: 218 NCKNKNKTRSIKIILTVVVFTVVLWVPFNIVLFINSLQSVGL 259


>tr|A8ERA5|A8ERA5_ARCB4 Putative uncharacterized protein
           OS=Arcobacter butzleri (strain RM4018) GN=Abu_0202 PE=4
           SV=1
          Length = 430

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +1

Query: 160 IFGNIEFKDEITSLLEQRYIPNKYLNVISRQCKNLTDLK 276
           I+GN  FK EI  +L+   I     NVI ++  NL DLK
Sbjct: 5   IYGNQRFKKEIYKILDSSQIKKIDNNVIIKEISNLNDLK 43


>tr|Q08YN7|Q08YN7_STIAU FHA domain protein OS=Stigmatella aurantiaca
           DW4/3-1 GN=STIAU_7505 PE=4 SV=1
          Length = 516

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +1

Query: 244 SRQCKNLTDLKAYCESARYREFLRLPYHKFRK*KEINQXXXXXXXXYNSFLPPPPPP 414
           +R+ + L DLK   E+ R  + + L +   R  K IN+         +   PPPPPP
Sbjct: 277 AREARKLLDLKQLDEAKRITDDVLLAFESHRDAKLINEEAVRLIEVRDRPPPPPPPP 333


>tr|A2TWX1|A2TWX1_9FLAO Putative uncharacterized protein
           OS=Polaribacter sp. MED152 GN=MED152_00310 PE=4 SV=1
          Length = 1576

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -3

Query: 174 NISKNRLTYTNCLKLIDKGDYVTDYPYYNCYTKYFQISPNFSIFPGGIKIVDY*YV 7
           N   N +T+T        G  VT  P YN  T  F ++PN S+ PG + +++  Y+
Sbjct: 577 NFIDNGITFTELRIQQASGPTVTINPNYNGETDTFLLAPNNSLAPGEVVVLELFYL 632