DK952792 |
Clone id |
TST38A01NGRL0015_A24 |
Library |
TST38 |
Length |
586 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0015_A24. 5' end sequence. |
Accession |
DK952792 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL100Contig1 |
Sequence |
TTCCTCCTGCGTTTCGCCTTCTCTGCTTCTCGCGAGAAGCCATGGCCGTCGGGAAGAACA AGCGCATATCTAAGGGCAAGAAGGGCGGCAAGAAAAAAGTTGTTGATCCCTTCTCGAAGA AAGACTGGTATGATGTGAAAGCTCCCTCTACTTTTCAAGTTCGCTCCGTGGGCAAAACCC TCGTGACCAGAACTCAGGGTACTAAGATTGCTGCGGATGGTCTGAAAGGGAGGGTGTTTG AAGTGTCCCTGGCAGATTTACAAAATGACGAGGATCATGCTCCTCGCAAAATCAAGCTCC GCGCTGAAGATGTTCAGGGAAAGAACGTCCTCACAAACTTCTGGGGGATGGACTTCACAA CAGATAAGCTGCGATCCCTCGTACGCAAGTGGCAATCATTGATTGAGGCACATGTGGATG TGAAGACCACTGACAACTACACTTTGAGGTTATTTTGTATTGCCTTCACAAAAAAGCGCC CCAATCAAATTAAGAAGACTTGCTATGCTCAGACGAGTCAAATTCGACAGATCCGTAAGA AAATGATTGGAGATAATGGTCCGTGAAGCTCAATCTTGTGACCTGA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P33444 |
Definition |
sp|P33444|RS3A_CATRO 40S ribosomal protein S3a OS=Catharanthus roseus |
Align length |
147 |
Score (bit) |
262.0 |
E-value |
7.0e-71 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9T7N1 |
Definition |
tr|A9T7N1|A9T7N1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
149 |
Score (bit) |
275.0 |
E-value |
2.0e-72 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK952792|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0015_A24, 5' (586 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9T7N1|A9T7N1_PHYPA Predicted protein OS=Physcomitrella paten... 275 2e-72 tr|A9RMS0|A9RMS0_PHYPA Predicted protein OS=Physcomitrella paten... 275 2e-72 tr|A9SHV8|A9SHV8_PHYPA Predicted protein OS=Physcomitrella paten... 273 4e-72 tr|A9SHV3|A9SHV3_PHYPA Predicted protein OS=Physcomitrella paten... 273 4e-72 tr|A9S3W8|A9S3W8_PHYPA Predicted protein OS=Physcomitrella paten... 273 7e-72 tr|A9SLV9|A9SLV9_PHYPA Predicted protein OS=Physcomitrella paten... 271 2e-71 tr|A0N0S0|A0N0S0_9ASPA RPS3 OS=Cymbidium hybrid cultivar PE=2 SV=1 271 3e-71 tr|A9NNV8|A9NNV8_PICSI Putative uncharacterized protein OS=Picea... 269 1e-70 tr|B7FLW8|B7FLW8_MEDTR Putative uncharacterized protein OS=Medic... 266 1e-70 tr|A9TFE1|A9TFE1_PHYPA Predicted protein OS=Physcomitrella paten... 268 2e-70 tr|Q0INR5|Q0INR5_ORYSJ Os12g0406200 protein OS=Oryza sativa subs... 266 8e-70 tr|B8BP92|B8BP92_ORYSI Putative uncharacterized protein OS=Oryza... 266 8e-70 tr|A3CGN4|A3CGN4_ORYSJ Putative uncharacterized protein OS=Oryza... 266 8e-70 tr|A7Q5X9|A7Q5X9_VITVI Chromosome chr14 scaffold_54, whole genom... 265 1e-69 tr|P93765|P93765_CATRO Cyc07 protein OS=Catharanthus roseus GN=c... 263 1e-69 tr|Q6K8B8|Q6K8B8_ORYSJ Os02g0287000 protein OS=Oryza sativa subs... 264 3e-69 tr|A3A5M8|A3A5M8_ORYSJ Putative uncharacterized protein OS=Oryza... 264 3e-69 tr|A2X3J5|A2X3J5_ORYSI Putative uncharacterized protein OS=Oryza... 264 3e-69 tr|A7NWS5|A7NWS5_VITVI Chromosome chr5 scaffold_2, whole genome ... 263 4e-69 tr|A5B4K1|A5B4K1_VITVI Putative uncharacterized protein OS=Vitis... 263 4e-69 tr|Q10QD8|Q10QD8_ORYSJ Os03g0200500 protein OS=Oryza sativa subs... 263 5e-69 tr|A9PAH0|A9PAH0_POPTR Putative uncharacterized protein OS=Popul... 263 5e-69 tr|A2XDL4|A2XDL4_ORYSI Putative uncharacterized protein OS=Oryza... 263 5e-69 tr|Q8GTE3|Q8GTE3_CICAR Ribosomal protein S3a OS=Cicer arietinum ... 261 7e-69 tr|A9NV66|A9NV66_PICSI Putative uncharacterized protein OS=Picea... 263 7e-69 tr|Q285L8|Q285L8_TOBAC Cyc07 OS=Nicotiana tabacum PE=2 SV=1 262 1e-68 tr|B6TAQ5|B6TAQ5_MAIZE 40S ribosomal protein S3a OS=Zea mays PE=... 262 1e-68 tr|A9PAJ6|A9PAJ6_POPTR Putative uncharacterized protein OS=Popul... 261 2e-68 tr|Q2XPX2|Q2XPX2_SOLTU 40S ribosomal protein S3a-like protein OS... 260 3e-68 tr|Q2XPV8|Q2XPV8_SOLTU Cyc07-like protein OS=Solanum tuberosum P... 260 3e-68
>tr|A9T7N1|A9T7N1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_219678 PE=3 SV=1 Length = 264
Score = 275 bits (702), Expect = 2e-72 Identities = 133/149 (89%), Positives = 142/149 (95%) Frame = +3
Query: 99 VVDPFSKKDWYDVKAPSTFQVRSVGKTLVTRTQGTKIAADGLKGRVFEVSLADLQNDEDH 278 +VDPFSKKDWYD+KAP+TF +S+GKTLVTRT GTKIA+DGLKGRVFEVSLADLQNDED Sbjct: 20 IVDPFSKKDWYDIKAPNTFTQKSLGKTLVTRTAGTKIASDGLKGRVFEVSLADLQNDEDQ 79
Query: 279 APRKIKLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQSLIEAHVDVKTTDNYTLRLFC 458 A RKIKLRAEDVQGKNVLTNFWGMD TTDKLRSLVRKWQSLIEAHVDVKTTDNY LR+FC Sbjct: 80 AFRKIKLRAEDVQGKNVLTNFWGMDLTTDKLRSLVRKWQSLIEAHVDVKTTDNYQLRIFC 139
Query: 459 IAFTKKRPNQIKKTCYAQTSQIRQIRKKM 545 IAFTKKRPNQIKKTCYAQ+SQIRQIR+KM Sbjct: 140 IAFTKKRPNQIKKTCYAQSSQIRQIRRKM 168
>tr|A9RMS0|A9RMS0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_204003 PE=3 SV=1 Length = 265
Score = 275 bits (702), Expect = 2e-72 Identities = 133/149 (89%), Positives = 142/149 (95%) Frame = +3
Query: 99 VVDPFSKKDWYDVKAPSTFQVRSVGKTLVTRTQGTKIAADGLKGRVFEVSLADLQNDEDH 278 +VDPFSKKDWYD+KAP+TF +S+GKTLVTRT GTKIA+DGLKGRVFEVSLADLQNDED Sbjct: 20 IVDPFSKKDWYDIKAPNTFTQKSLGKTLVTRTAGTKIASDGLKGRVFEVSLADLQNDEDQ 79
Query: 279 APRKIKLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQSLIEAHVDVKTTDNYTLRLFC 458 A RKIKLRAEDVQGKNVLTNFWGMD TTDKLRSLVRKWQSLIEAHVDVKTTDNY LR+FC Sbjct: 80 AFRKIKLRAEDVQGKNVLTNFWGMDLTTDKLRSLVRKWQSLIEAHVDVKTTDNYQLRIFC 139
Query: 459 IAFTKKRPNQIKKTCYAQTSQIRQIRKKM 545 IAFTKKRPNQIKKTCYAQ+SQIRQIR+KM Sbjct: 140 IAFTKKRPNQIKKTCYAQSSQIRQIRRKM 168
>tr|A9SHV8|A9SHV8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_57866 PE=3 SV=1 Length = 244
Score = 273 bits (699), Expect = 4e-72 Identities = 132/149 (88%), Positives = 142/149 (95%) Frame = +3
Query: 99 VVDPFSKKDWYDVKAPSTFQVRSVGKTLVTRTQGTKIAADGLKGRVFEVSLADLQNDEDH 278 +VDPFSKKDWYD+KAP+TF +S+GKTLVTRT GTKIA+DGLKGRVFEVSLADLQNDED Sbjct: 20 IVDPFSKKDWYDIKAPNTFTQKSLGKTLVTRTAGTKIASDGLKGRVFEVSLADLQNDEDQ 79
Query: 279 APRKIKLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQSLIEAHVDVKTTDNYTLRLFC 458 A RKIKLRAEDVQGKNVLTNFWGMD TTDKLRSLVRKWQSLIE+HVDVKTTDNY LR+FC Sbjct: 80 AFRKIKLRAEDVQGKNVLTNFWGMDLTTDKLRSLVRKWQSLIESHVDVKTTDNYMLRIFC 139
Query: 459 IAFTKKRPNQIKKTCYAQTSQIRQIRKKM 545 IAFTKKRPNQIKKTCYAQ+SQIRQIR+KM Sbjct: 140 IAFTKKRPNQIKKTCYAQSSQIRQIRRKM 168
>tr|A9SHV3|A9SHV3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_212515 PE=3 SV=1 Length = 259
Score = 273 bits (699), Expect = 4e-72 Identities = 132/149 (88%), Positives = 142/149 (95%) Frame = +3
Query: 99 VVDPFSKKDWYDVKAPSTFQVRSVGKTLVTRTQGTKIAADGLKGRVFEVSLADLQNDEDH 278 +VDPFSKKDWYD+KAP+TF +S+GKTLVTRT GTKIA+DGLKGRVFEVSLADLQNDED Sbjct: 20 IVDPFSKKDWYDIKAPNTFTQKSLGKTLVTRTAGTKIASDGLKGRVFEVSLADLQNDEDQ 79
Query: 279 APRKIKLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQSLIEAHVDVKTTDNYTLRLFC 458 A RKIKLRAEDVQGKNVLTNFWGMD TTDKLRSLVRKWQSLIE+HVDVKTTDNY LR+FC Sbjct: 80 AFRKIKLRAEDVQGKNVLTNFWGMDLTTDKLRSLVRKWQSLIESHVDVKTTDNYMLRIFC 139
Query: 459 IAFTKKRPNQIKKTCYAQTSQIRQIRKKM 545 IAFTKKRPNQIKKTCYAQ+SQIRQIR+KM Sbjct: 140 IAFTKKRPNQIKKTCYAQSSQIRQIRRKM 168
>tr|A9S3W8|A9S3W8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_162682 PE=3 SV=1 Length = 263
Score = 273 bits (697), Expect = 7e-72 Identities = 131/149 (87%), Positives = 142/149 (95%) Frame = +3
Query: 99 VVDPFSKKDWYDVKAPSTFQVRSVGKTLVTRTQGTKIAADGLKGRVFEVSLADLQNDEDH 278 +VDPFSKKDWYD+KAP+TF +++GKTLVTRT GTKIA+DGLKGRVFEVSLADLQNDED Sbjct: 20 IVDPFSKKDWYDIKAPNTFTQKNLGKTLVTRTAGTKIASDGLKGRVFEVSLADLQNDEDQ 79
Query: 279 APRKIKLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQSLIEAHVDVKTTDNYTLRLFC 458 A RKIKLRAEDVQGKNVLTNFWGMD TTDKLRSLVRKWQSLIEAHVDVKTTDNY +R+FC Sbjct: 80 AFRKIKLRAEDVQGKNVLTNFWGMDLTTDKLRSLVRKWQSLIEAHVDVKTTDNYQIRMFC 139
Query: 459 IAFTKKRPNQIKKTCYAQTSQIRQIRKKM 545 IAFTKKRPNQIKKTCYAQ+SQIRQIR+KM Sbjct: 140 IAFTKKRPNQIKKTCYAQSSQIRQIRRKM 168
>tr|A9SLV9|A9SLV9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_233661 PE=3 SV=1 Length = 263
Score = 271 bits (693), Expect = 2e-71 Identities = 131/149 (87%), Positives = 141/149 (94%) Frame = +3
Query: 99 VVDPFSKKDWYDVKAPSTFQVRSVGKTLVTRTQGTKIAADGLKGRVFEVSLADLQNDEDH 278 +VDPFSKKDWYD+KAP+ F +++GKTLVTRT GTKIA+DGLKGRVFEVSLADLQNDED Sbjct: 20 IVDPFSKKDWYDIKAPNIFTQKALGKTLVTRTAGTKIASDGLKGRVFEVSLADLQNDEDQ 79
Query: 279 APRKIKLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQSLIEAHVDVKTTDNYTLRLFC 458 A RKIKLRAEDVQGKNVLTNFWGMD TTDKLRSLVRKWQSLIEAHVDVKTTDNY LR+FC Sbjct: 80 AFRKIKLRAEDVQGKNVLTNFWGMDLTTDKLRSLVRKWQSLIEAHVDVKTTDNYQLRIFC 139
Query: 459 IAFTKKRPNQIKKTCYAQTSQIRQIRKKM 545 IAFTKKRPNQIKKTCYAQ+SQIRQIR+KM Sbjct: 140 IAFTKKRPNQIKKTCYAQSSQIRQIRRKM 168
>tr|A0N0S0|A0N0S0_9ASPA RPS3 OS=Cymbidium hybrid cultivar PE=2 SV=1 Length = 261
Score = 271 bits (692), Expect = 3e-71 Identities = 127/148 (85%), Positives = 142/148 (95%) Frame = +3
Query: 102 VDPFSKKDWYDVKAPSTFQVRSVGKTLVTRTQGTKIAADGLKGRVFEVSLADLQNDEDHA 281 VDPFSKKDWYD+KAPS F VR++GKTLV+RTQGTKIA++GLK RVFE+SLADLQNDED + Sbjct: 21 VDPFSKKDWYDIKAPSVFTVRNIGKTLVSRTQGTKIASEGLKHRVFEISLADLQNDEDQS 80
Query: 282 PRKIKLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQSLIEAHVDVKTTDNYTLRLFCI 461 RKI+LRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQ+LIEAH+DVKTTDNYTLRLFCI Sbjct: 81 YRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHIDVKTTDNYTLRLFCI 140
Query: 462 AFTKKRPNQIKKTCYAQTSQIRQIRKKM 545 FTK+RPNQ+K+TCYAQTSQIRQIR+KM Sbjct: 141 GFTKRRPNQVKRTCYAQTSQIRQIRRKM 168
>tr|A9NNV8|A9NNV8_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 245
Score = 269 bits (687), Expect = 1e-70 Identities = 128/148 (86%), Positives = 142/148 (95%) Frame = +3
Query: 102 VDPFSKKDWYDVKAPSTFQVRSVGKTLVTRTQGTKIAADGLKGRVFEVSLADLQNDEDHA 281 VDPF+KKDWYDVKAPSTF R+VGKTLVTRTQGTKIA++GLK RVFE+SLADLQNDED A Sbjct: 5 VDPFTKKDWYDVKAPSTFNTRTVGKTLVTRTQGTKIASEGLKHRVFELSLADLQNDEDQA 64
Query: 282 PRKIKLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQSLIEAHVDVKTTDNYTLRLFCI 461 RKIKLRAEDVQG+NVLTNFWGMDFTTDKLRSLVRKWQ+LIEAHVDVKTTD+YTLR+FCI Sbjct: 65 FRKIKLRAEDVQGRNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDSYTLRMFCI 124
Query: 462 AFTKKRPNQIKKTCYAQTSQIRQIRKKM 545 FTK+RPNQ+K+TCYAQ+SQIRQIR+KM Sbjct: 125 GFTKRRPNQVKRTCYAQSSQIRQIRRKM 152
>tr|B7FLW8|B7FLW8_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 261
Score = 266 bits (679), Expect(2) = 1e-70 Identities = 125/148 (84%), Positives = 142/148 (95%) Frame = +3
Query: 105 DPFSKKDWYDVKAPSTFQVRSVGKTLVTRTQGTKIAADGLKGRVFEVSLADLQNDEDHAP 284 DPFSKKDWYD+KAPS FQV++VGKTLV+RTQGTKIA+DGLK RVFEVSLADLQ DE+HA Sbjct: 22 DPFSKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASDGLKHRVFEVSLADLQGDEEHAF 81
Query: 285 RKIKLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQSLIEAHVDVKTTDNYTLRLFCIA 464 RKI+LRAEDVQGKN+LTNFWGM+FTTDKLRSLVRKWQ+LIEAHVDVKTTDNYTLR+FCI Sbjct: 82 RKIRLRAEDVQGKNLLTNFWGMNFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCIG 141
Query: 465 FTKKRPNQIKKTCYAQTSQIRQIRKKMI 548 FTK+R NQ+K+TCYAQ+SQIRQIR+KM+ Sbjct: 142 FTKRRANQVKRTCYAQSSQIRQIRRKMV 169
Score = 25.0 bits (53), Expect(2) = 1e-70 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = +1
Query: 538 RK*LEIMVREAQSCDL 585 RK +EIM+ +A SCDL Sbjct: 166 RKMVEIMINQASSCDL 181
>tr|A9TFE1|A9TFE1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_169774 PE=3 SV=1 Length = 269
Score = 268 bits (684), Expect = 2e-70 Identities = 132/155 (85%), Positives = 142/155 (91%), Gaps = 6/155 (3%) Frame = +3
Query: 99 VVDPFSKKDWYDVKAPSTFQVRSVGKTLVTRTQGTK------IAADGLKGRVFEVSLADL 260 +VDPFSKKDWYD+KAP+TF +++GKTLVTRT GTK IA+DGLKGRVFEVSLADL Sbjct: 20 IVDPFSKKDWYDIKAPNTFTQKNLGKTLVTRTAGTKAISSSDIASDGLKGRVFEVSLADL 79
Query: 261 QNDEDHAPRKIKLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQSLIEAHVDVKTTDNY 440 QNDED A RKIKLRAEDVQGKNVLTNFWGMD TTDKLRSLVRKWQSLIEAHVDVKTTDNY Sbjct: 80 QNDEDQAFRKIKLRAEDVQGKNVLTNFWGMDLTTDKLRSLVRKWQSLIEAHVDVKTTDNY 139
Query: 441 TLRLFCIAFTKKRPNQIKKTCYAQTSQIRQIRKKM 545 +R+FCIAFTKKRPNQIKKTCYAQTSQIRQIR+KM Sbjct: 140 MIRMFCIAFTKKRPNQIKKTCYAQTSQIRQIRRKM 174
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