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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK952800
Clone id TST38A01NGRL0015_B08
Library
Length 439
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0015_B08. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GTGGCTTTGGAGAACAAAGTGAGGAGGAAGAGGAGATCTTTGGCAGTGAGAAAGCTTGAA
GGTGTTCTCTCTCAGTGATCCTCCATCTCTCTGTCTCTTGTGCAGTTCCAAGGAAGGCGA
AGGCAAGCTCAAAGGATGGGAAGAGCTCACACAATATCGCTCTCTTGGGGCGTGTGTGTG
TTTTTGAAGGACTAGAGGACCAAGGGAAGTCGGAGAAGCTAAGGCGAGTGCAGAAGCAAG
GGGAAAGTGGAAGGACTGGGAAGAGGAAGATTACACCCTGTCTCGCACTCTTCTTTGCAA
CATTGCTTCTCTCTCTTTTCACTCTCATTCAAGAAGAAGGAAAGGAGCTTACAGTGCCCA
TTTGAGGCTAACTTTGTAATTAGTTTTTGAATTTATTAAGCAATACAATTTTTGTTCTAA
AAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q6N643
Definition sp|Q6N643|KTHY_RHOPA Thymidylate kinase OS=Rhodopseudomonas palustris
Align length 34
Score (bit) 28.9
E-value 8.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952800|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0015_B08, 5'
         (418 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6N643|KTHY_RHOPA Thymidylate kinase OS=Rhodopseudomonas palu...    29   8.4  

>sp|Q6N643|KTHY_RHOPA Thymidylate kinase OS=Rhodopseudomonas
           palustris GN=tmk PE=3 SV=1
          Length = 230

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 153 NIALLGRVCVFEGLEDQGKSEKLRRVQKQGESGR 254
           N +L GR   FEG E  GKS ++R + K+ E  R
Sbjct: 8   NRSLRGRFITFEGGEGAGKSTQIRLLAKRLEKAR 41
tr_hit_id A5N729
Definition tr|A5N729|A5N729_CLOK5 DNA topoisomerase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680)
Align length 42
Score (bit) 33.5
E-value 5.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952800|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0015_B08, 5'
         (418 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5N729|A5N729_CLOK5 DNA topoisomerase OS=Clostridium kluyveri...    33   5.4  

>tr|A5N729|A5N729_CLOK5 DNA topoisomerase OS=Clostridium kluyveri
           (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=topA2 PE=3
           SV=1
          Length = 727

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +1

Query: 226 ECRSKGKVEGLGRGRLHPVSHSSLQHCFSLFSLSFKKKERSL 351
           EC  K +++G G  R++  SH S +  FS F+  FK+ E  L
Sbjct: 652 ECHKKLELKGEGEKRIYVCSHCSFREKFSSFNKRFKENEGKL 693