DK952804
Clone id TST38A01NGRL0015_B12
Library
Length 637
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0015_B12. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence
AAATTTGCTTGTATCTGCATTTCCTCTCCTCGTGGAAGGACCTCCCGATTGTTATCGCAG
GTGATAGTTTGCGGGCCGCAGTTGAGTTTCGTGTATCAAGGGTAGTATGAATGCGAAATT
CAACAATCGCTCGTCAATCGAACCTGTGGATGAAGAAACCTGCGTATCTCCACTCGAACC
TAAACTGCATTGAAAATTTTGATTTGCCAGCAGGTCGTCTGCTGGTCCTTGTAAGCTTTT
GAAGATTTCATGTTCACATTCAGCCATGGAGATGAAAGACAGACATTCTTCTTTTTTAGC
AATGGAGAAGTCATCATCTTTGCTGGAGGCCATGGTGGATTTGTCTGCCAATATGGTGCC
TTTGTGGGTAGCTGTACTGATCGGCCTTTTTGTAGGATGGATATGGAAGCCACGGTGGGT
GAGCTTACTGTTTCTAGGGGTAAGAGGCAGGCACAGACTCGTCTGGACTAGTCCTCCAGG
CCTAGGTGTGCGGCGCTTCTGGATTGCATTGACTGCTTCAGTGACCGCCTTTCAAATGCT
GAAAGAATGCTGGTTGAAATTTAAAGCATGGAAATGGCCTCAGACTCAGTCTCCTGAAGG
AATTGAAGAGAGGGAAAGGCCACTTCAGGCTACTGAC
■■Homology search results ■■ -
sp_hit_id Q04003
Definition sp|Q04003|SAS4_YEAST Something about silencing protein 4 OS=Saccharomyces cerevisiae
Align length 82
Score (bit) 33.9
E-value 0.73
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK952804|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0015_B12, 5'
(637 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q04003|SAS4_YEAST Something about silencing protein 4 OS=Sacc... 34 0.73
sp|Q9USP9|YHP4_SCHPO Uncharacterized RNA-binding protein C902.04... 32 2.1
sp|Q83Z42|OPGH_XANEU Glucans biosynthesis glucosyltransferase H ... 31 4.7
sp|Q3BXV7|OPGH_XANC5 Glucans biosynthesis glucosyltransferase H ... 31 4.7
sp|Q8PPR7|OPGH_XANAC Glucans biosynthesis glucosyltransferase H ... 31 4.7
sp|O18175|SRE33_CAEEL Serpentine receptor class epsilon-33 OS=Ca... 31 6.2
sp|Q86V87|F16B2_HUMAN UPF0518 protein FAM160B2 OS=Homo sapiens G... 31 6.2
sp|O54935|XRCC1_CRIGR DNA repair protein XRCC1 OS=Cricetulus gri... 30 8.1
sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Sola... 30 8.1

>sp|Q04003|SAS4_YEAST Something about silencing protein 4
OS=Saccharomyces cerevisiae GN=SAS4 PE=1 SV=1
Length = 481

Score = 33.9 bits (76), Expect = 0.73
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = -2

Query: 429 SKLTHRGFHIHPTKRPISTATHKGTILADKSTMASS--KDDDFSIAKKEECLSFISMAEC 256
S++ H+ +K + H K M S + D I KK E ++ +++
Sbjct: 51 SRINPNAGHLRKSKSCFTVDEHVDETRCQKPVMKSPFMSNVDDEIKKKRETITKMTLEIE 110

Query: 255 EHEIFKSLQGPADDLLANQNFQ 190
HE+ ++++ P DDLL + +Q
Sbjct: 111 HHELSQNIRKPTDDLLPDSTYQ 132


>sp|Q9USP9|YHP4_SCHPO Uncharacterized RNA-binding protein C902.04
OS=Schizosaccharomyces pombe GN=SPBC902.04 PE=1 SV=1
Length = 589

Score = 32.3 bits (72), Expect = 2.1
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = -2

Query: 414 RGFHIHPTKRPISTATHKGTILADKSTMASSKD-DDFSIAKKEECLSFISMAECEHE 247
+GFH RP A+HK +D S + SS+D D S+ + EE I + +HE
Sbjct: 316 KGFH----NRPKKFASHKSPTTSDSSNVESSEDVDPASLLQNEEFHKLIEERQRQHE 368


>sp|Q83Z42|OPGH_XANEU Glucans biosynthesis glucosyltransferase H
OS=Xanthomonas euvesicatoria GN=opgH PE=3 SV=1
Length = 643

Score = 31.2 bits (69), Expect = 4.7
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Frame = +2

Query: 467 TSPPGLGVRRFWIA----LTASVTAFQMLKECW 553
TSPPG+GVRRF++ T ++ + ML W
Sbjct: 52 TSPPGIGVRRFYLIGGTFATTAIAVWVMLSVLW 84


>sp|Q3BXV7|OPGH_XANC5 Glucans biosynthesis glucosyltransferase H
OS=Xanthomonas campestris pv. vesicatoria (strain 85-10)
GN=opgH PE=3 SV=1
Length = 645

Score = 31.2 bits (69), Expect = 4.7
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Frame = +2

Query: 467 TSPPGLGVRRFWIA----LTASVTAFQMLKECW 553
TSPPG+GVRRF++ T ++ + ML W
Sbjct: 52 TSPPGIGVRRFYLIGGTFATTAIAVWVMLSVLW 84


>sp|Q8PPR7|OPGH_XANAC Glucans biosynthesis glucosyltransferase H
OS=Xanthomonas axonopodis pv. citri GN=opgH PE=3 SV=2
Length = 645

Score = 31.2 bits (69), Expect = 4.7
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Frame = +2

Query: 467 TSPPGLGVRRFWIA----LTASVTAFQMLKECW 553
TSPPG+GVRRF++ T ++ + ML W
Sbjct: 52 TSPPGIGVRRFYLIGGTFATTAIAVWVMLSVLW 84


>sp|O18175|SRE33_CAEEL Serpentine receptor class epsilon-33
OS=Caenorhabditis elegans GN=sre-33 PE=2 SV=2
Length = 359

Score = 30.8 bits (68), Expect = 6.2
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = +2

Query: 341 LSANMVPLWVAVLIGLFVGWIWKPRWVSLLFLGVRGRHRLVWTSPPGLGVRRFWIALTAS 520
L+ M +W ++IG F+ ++ + + L F G H +WT+ PG + L AS
Sbjct: 66 LALPMFGMWYELIIGKFITIAYRLKLLGLDF--ELGEHTAIWTNDPGK------VLLVAS 117

Query: 521 VTAFQML 541
+ ++L
Sbjct: 118 LNGLELL 124


>sp|Q86V87|F16B2_HUMAN UPF0518 protein FAM160B2 OS=Homo sapiens
GN=FAM160B2 PE=2 SV=2
Length = 743

Score = 30.8 bits (68), Expect = 6.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2

Query: 527 AFQMLKECWLKFKAWKWPQTQSPEGIEERERP 622
A+ + +EC + +W WP T +P E ERP
Sbjct: 566 AYGLFQECSSRVASWGWPLTPTPLDPHEPERP 597


>sp|O54935|XRCC1_CRIGR DNA repair protein XRCC1 OS=Cricetulus
griseus GN=XRCC1 PE=2 SV=1
Length = 633

Score = 30.4 bits (67), Expect = 8.1
Identities = 25/90 (27%), Positives = 37/90 (41%)
Frame = -2

Query: 408 FHIHPTKRPISTATHKGTILADKSTMASSKDDDFSIAKKEECLSFISMAECEHEIFKSLQ 229
FH P K T + KGT+ ++DD + + K L F + + S +
Sbjct: 153 FHSPPDKDEAETPSQKGTV-TKLGQFRVKEEDDGASSLKPGALFFSRINKTSS---ASAR 208

Query: 228 GPADDLLANQNFQCSLGSSGDTQVSSSTGS 139
GPA A Q S +S + VS + GS
Sbjct: 209 GPAGPSYAAATLQASNATSSASSVSKALGS 238


>sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum
lycopersicum GN=CURL3 PE=1 SV=1
Length = 1207

Score = 30.4 bits (67), Expect = 8.1
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
Frame = +2

Query: 215 SSAGPCKLLKISCSHSAMEMKDRHSSFLAMEKS--------SSLLEAMVDLSANM 355
SS GPC +SC +S + D ++FL+++ S S LE++V +AN+
Sbjct: 66 SSTGPCSFTGVSCKNSRVSSIDLSNTFLSVDFSLVTSYLLPLSNLESLVLKNANL 120


tr_hit_id A9TCG3
Definition tr|A9TCG3|A9TCG3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 89
Score (bit) 119.0
E-value 2.0e-25
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK952804|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0015_B12, 5'
(637 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9TCG3|A9TCG3_PHYPA Predicted protein OS=Physcomitrella paten... 119 2e-25
tr|A7NX17|A7NX17_VITVI Chromosome chr5 scaffold_2, whole genome ... 105 2e-21
tr|A5BHP5|A5BHP5_VITVI Putative uncharacterized protein OS=Vitis... 105 2e-21
tr|A9NUT1|A9NUT1_PICSI Putative uncharacterized protein OS=Picea... 104 4e-21
tr|A9U359|A9U359_PHYPA Predicted protein OS=Physcomitrella paten... 103 7e-21
tr|Q944M2|Q944M2_ARATH AT4g14500/dl3290w (At4g14500) (Expressed ... 98 4e-19
tr|O23306|O23306_ARATH Putative uncharacterized protein dl3290w ... 98 4e-19
tr|B4G219|B4G219_MAIZE Putative uncharacterized protein OS=Zea m... 87 7e-16
tr|Q9LS84|Q9LS84_ARATH Membrane related protein-like (Putative u... 86 1e-15
tr|Q93ZZ1|Q93ZZ1_ARATH Putative uncharacterized protein At3g2308... 86 1e-15
tr|B8B7W5|B8B7W5_ORYSI Putative uncharacterized protein OS=Oryza... 83 2e-14
tr|A3BHA2|A3BHA2_ORYSJ Putative uncharacterized protein OS=Oryza... 81 5e-14
tr|Q2V3T7|Q2V3T7_ARATH Uncharacterized protein At3g23080.2 OS=Ar... 68 4e-10
tr|Q7XTJ2|Q7XTJ2_ORYSJ Os04g0119500 protein OS=Oryza sativa subs... 45 0.005
tr|Q6ZXK5|Q6ZXK5_ORYSJ Membrane related protein OS=Oryza sativa ... 45 0.005
tr|A2XPT7|A2XPT7_ORYSI Putative uncharacterized protein OS=Oryza... 45 0.005
tr|Q9XIR9|Q9XIR9_ARATH Putative membrane related protein OS=Arab... 44 0.006
tr|Q9XF49|Q9XF49_ARATH Membrane related protein CP5 OS=Arabidops... 44 0.006
tr|Q8L7P8|Q8L7P8_ARATH Membrane related protein CP5, putative OS... 44 0.006
tr|B7FHR4|B7FHR4_MEDTR Putative uncharacterized protein (Fragmen... 44 0.008
tr|Q01MR5|Q01MR5_ORYSA H0716A07.8 protein OS=Oryza sativa GN=H07... 44 0.011
tr|B4G0M5|B4G0M5_MAIZE Putative uncharacterized protein OS=Zea m... 43 0.014
tr|Q9FK24|Q9FK24_ARATH Membrane related protein-like OS=Arabidop... 43 0.018
tr|Q8LAQ0|Q8LAQ0_ARATH Membrane related protein-like OS=Arabidop... 43 0.018
tr|B6TV06|B6TV06_MAIZE CP5 OS=Zea mays PE=2 SV=1 43 0.018
tr|B6T237|B6T237_MAIZE CP5 OS=Zea mays PE=2 SV=1 43 0.018
tr|Q6Z705|Q6Z705_ORYSJ Putative membrane related protein CP5 OS=... 42 0.041
tr|B8AGY6|B8AGY6_ORYSI Putative uncharacterized protein OS=Oryza... 42 0.041
tr|A3A2N2|A3A2N2_ORYSJ Putative uncharacterized protein OS=Oryza... 42 0.041
tr|Q5R0F2|Q5R0F2_IDILO Carbon starvation regulatory protein OS=I... 39 0.27

>tr|A9TCG3|A9TCG3_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_143492 PE=4 SV=1
Length = 435

Score = 119 bits (298), Expect = 2e-25
Identities = 48/89 (53%), Positives = 64/89 (71%)
Frame = +2

Query: 314 SSLLEAMVDLSANMVPLWVAVLIGLFVGWIWKPRWVSLLFLGVRGRHRLVWTSPPGLGVR 493
S+++E D+ MVP+WVAV +GL VGW WKP+W S+L +G++ R RL+W +PPG G R
Sbjct: 16 SAVMETAADMLLGMVPIWVAVAVGLLVGWSWKPQWASILLMGIKSRPRLIWGTPPGFGAR 75

Query: 494 RFWIALTASVTAFQMLKECWLKFKAWKWP 580
RFW+A+ A V+AF M KE W F AW WP
Sbjct: 76 RFWLAIMA-VSAFPMWKEAWKSFSAWMWP 103


>tr|A7NX17|A7NX17_VITVI Chromosome chr5 scaffold_2, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00020141001
PE=4 SV=1
Length = 439

Score = 105 bits (262), Expect = 2e-21
Identities = 44/98 (44%), Positives = 66/98 (67%)
Frame = +2

Query: 272 MKDRHSSFLAMEKSSSLLEAMVDLSANMVPLWVAVLIGLFVGWIWKPRWVSLLFLGVRGR 451
M+D F+ K S++E ++D+ VP+WVAV+IGL +GW W+PRW L++LG+R +
Sbjct: 1 MEDIFFDFMDFMKKPSVIETLLDILLCAVPIWVAVMIGLVIGWSWRPRWTGLVYLGLRSK 60

Query: 452 HRLVWTSPPGLGVRRFWIALTASVTAFQMLKECWLKFK 565
R +WT+PPG G RR W+A TA ++AF + + W FK
Sbjct: 61 FRFLWTAPPGFGARRLWLAFTA-LSAFSVGRTIWSNFK 97


>tr|A5BHP5|A5BHP5_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_018339 PE=4 SV=1
Length = 410

Score = 105 bits (262), Expect = 2e-21
Identities = 44/98 (44%), Positives = 66/98 (67%)
Frame = +2

Query: 272 MKDRHSSFLAMEKSSSLLEAMVDLSANMVPLWVAVLIGLFVGWIWKPRWVSLLFLGVRGR 451
M+D F+ K S++E ++D+ VP+WVAV+IGL +GW W+PRW L++LG+R +
Sbjct: 1 MEDIFFDFMDFMKKPSVIETLLDILLCAVPIWVAVMIGLVIGWSWRPRWTGLVYLGLRSK 60

Query: 452 HRLVWTSPPGLGVRRFWIALTASVTAFQMLKECWLKFK 565
R +WT+PPG G RR W+A TA ++AF + + W FK
Sbjct: 61 FRFLWTAPPGFGARRLWLAFTA-LSAFSVGRTIWSNFK 97


>tr|A9NUT1|A9NUT1_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 426

Score = 104 bits (260), Expect = 4e-21
Identities = 48/104 (46%), Positives = 66/104 (63%), Gaps = 4/104 (3%)
Frame = +2

Query: 308 KSSSLLEAMVDLSANMVPLWVAVLIGLFVGWIWKPRWVSLLFLGVRGRHRLVWTSPPGLG 487
+ +L+E VD++ +VPLW+AV+IGL VGW WKPRW L+ LG++ + R WT+PPG G
Sbjct: 13 RKPALVETFVDIAMCLVPLWLAVMIGLLVGWAWKPRWAGLICLGMKSKIRFAWTAPPGFG 72

Query: 488 VRRFWIALTASVTAFQMLKECWLKFKAWKW----PQTQSPEGIE 607
RR W A+TA +TAF +L++ W F K P Q P E
Sbjct: 73 ARRLWFAITA-LTAFPVLRKLWSNFSDSKAKGDDPTLQEPASTE 115


>tr|A9U359|A9U359_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_155288 PE=4 SV=1
Length = 429

Score = 103 bits (258), Expect = 7e-21
Identities = 47/101 (46%), Positives = 63/101 (62%)
Frame = +2

Query: 317 SLLEAMVDLSANMVPLWVAVLIGLFVGWIWKPRWVSLLFLGVRGRHRLVWTSPPGLGVRR 496
+++E D+ MVP WVA IGL VGW+WKP+W S+L LGV+ R RLVW +PPG G RR
Sbjct: 17 AVMETAADMMFCMVPFWVATAIGLLVGWLWKPQWASILLLGVKSRPRLVWDTPPGFGARR 76

Query: 497 FWIALTASVTAFQMLKECWLKFKAWKWPQTQSPEGIEERER 619
FW+A+ A ++A M KE W F + S +ER +
Sbjct: 77 FWLAIMA-LSALPMWKEAWKSFNVLECSSMCSEPDAKERTK 116


>tr|Q944M2|Q944M2_ARATH AT4g14500/dl3290w (At4g14500) (Expressed
protein) OS=Arabidopsis thaliana GN=At4g14500 PE=2 SV=1
Length = 433

Score = 98.2 bits (243), Expect = 4e-19
Identities = 41/94 (43%), Positives = 60/94 (63%)
Frame = +2

Query: 272 MKDRHSSFLAMEKSSSLLEAMVDLSANMVPLWVAVLIGLFVGWIWKPRWVSLLFLGVRGR 451
M + + L K+ S E VD+ VP+W+AV+IGL +GW W+PRW L++LG R +
Sbjct: 1 MDETYFDLLNFFKNPSFTETFVDILLCAVPIWLAVMIGLLIGWSWRPRWTGLIYLGFRSK 60

Query: 452 HRLVWTSPPGLGVRRFWIALTASVTAFQMLKECW 553
R +WT+PPG G RR W+A TA ++AF + + W
Sbjct: 61 LRFLWTAPPGFGARRLWLAFTA-LSAFSVCRTIW 93


>tr|O23306|O23306_ARATH Putative uncharacterized protein dl3290w
(Putative uncharacterized protein AT4g14500)
OS=Arabidopsis thaliana GN=dl3290w PE=4 SV=1
Length = 420

Score = 98.2 bits (243), Expect = 4e-19
Identities = 41/94 (43%), Positives = 60/94 (63%)
Frame = +2

Query: 272 MKDRHSSFLAMEKSSSLLEAMVDLSANMVPLWVAVLIGLFVGWIWKPRWVSLLFLGVRGR 451
M + + L K+ S E VD+ VP+W+AV+IGL +GW W+PRW L++LG R +
Sbjct: 1 MDETYFDLLNFFKNPSFTETFVDILLCAVPIWLAVMIGLLIGWSWRPRWTGLIYLGFRSK 60

Query: 452 HRLVWTSPPGLGVRRFWIALTASVTAFQMLKECW 553
R +WT+PPG G RR W+A TA ++AF + + W
Sbjct: 61 LRFLWTAPPGFGARRLWLAFTA-LSAFSVCRTIW 93


>tr|B4G219|B4G219_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 438

Score = 87.4 bits (215), Expect = 7e-16
Identities = 39/74 (52%), Positives = 51/74 (68%)
Frame = +2

Query: 296 LAMEKSSSLLEAMVDLSANMVPLWVAVLIGLFVGWIWKPRWVSLLFLGVRGRHRLVWTSP 475
+A+ + ++ E VD+ VP+W AV+IGL VGW W+PRW LLFLG+R R R++W P
Sbjct: 9 VALLQRPAVAEMAVDVLLCAVPIWAAVMIGLVVGWSWRPRWTGLLFLGLRSRLRILWV-P 67

Query: 476 PGLGVRRFWIALTA 517
PGLG RR W A TA
Sbjct: 68 PGLGARRLWFACTA 81


>tr|Q9LS84|Q9LS84_ARATH Membrane related protein-like (Putative
uncharacterized protein At3g23080) OS=Arabidopsis
thaliana GN=At3g23080 PE=2 SV=1
Length = 419

Score = 86.3 bits (212), Expect = 1e-15
Identities = 38/82 (46%), Positives = 53/82 (64%)
Frame = +2

Query: 293 FLAMEKSSSLLEAMVDLSANMVPLWVAVLIGLFVGWIWKPRWVSLLFLGVRGRHRLVWTS 472
F+ S+ E VD+ VP+WV V+IGL +GW W+PRW SL++LG R + R + T
Sbjct: 4 FMDFFNKPSVTETFVDVLLCAVPIWVTVMIGLLIGWSWRPRWTSLVYLGFRSKLRFLCTV 63

Query: 473 PPGLGVRRFWIALTASVTAFQM 538
PPG G RR W+A TA ++AF +
Sbjct: 64 PPGFGARRIWLAFTA-LSAFSV 84


>tr|Q93ZZ1|Q93ZZ1_ARATH Putative uncharacterized protein At3g23080
OS=Arabidopsis thaliana GN=At3g23080 PE=2 SV=1
Length = 419

Score = 86.3 bits (212), Expect = 1e-15
Identities = 38/82 (46%), Positives = 53/82 (64%)
Frame = +2

Query: 293 FLAMEKSSSLLEAMVDLSANMVPLWVAVLIGLFVGWIWKPRWVSLLFLGVRGRHRLVWTS 472
F+ S+ E VD+ VP+WV V+IGL +GW W+PRW SL++LG R + R + T
Sbjct: 4 FMDFFNKPSVTETFVDVLLCAVPIWVTVMIGLLIGWSWRPRWTSLVYLGFRSKLRFLCTV 63

Query: 473 PPGLGVRRFWIALTASVTAFQM 538
PPG G RR W+A TA ++AF +
Sbjct: 64 PPGFGARRIWLAFTA-LSAFSV 84