DK952806 |
Clone id |
TST38A01NGRL0015_B14 |
Library |
TST38 |
Length |
595 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0015_B14. 5' end sequence. |
Accession |
DK952806 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL353Contig1 |
Sequence |
CGGCCGCACAACTTTGTACAAGAAAGTTGGGTTTGTTTTTTGCAAATAATTGGATATAAA GCCAGTACTAACCCACAAGGCTCTGTTTTGAATTTAAAACTAGGGTTCAGCCATGAGATT CGACTCCAGGTCACGCCTTCGGTTCGTGTTTTCTGCTTAAAGTATAATATCATTTGTTGC ACTGGAACGGATCCCCAAAAAGTTACTCAATTCGCTGCTAGCGTTAAAAGCTGCAAACCT CCTGAAGTTTATAAGGGAAGAGGTATAAAATATCAAAATGAAATTATACGTAGAAAAGAG GGGGGGAAGAAATAACTCGTGTCATATATTCTAGGAACCAAATTAGTTTCCAATAAACAA ATCAGACTTGCCTTAACTCAAATCTTTGGAATTGGACCCAAAAAAAGCCACTTGGATTTG TGATCAATTAGGTCTCAGCGATAACACCAAGGTTAATAATCTGACTCGGCACCAAATTAA CTGGATTAGCAAAATAGTACGTCGAAAAAAGAAACTAGTTGATTCAGAATTAAAGAGAGG CATTCAAGAAAATATCAAACGATTAATTAATATTTGCTGTTACCGTGGATTTCGC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P26861 |
Definition |
sp|P26861|RM06_MARPO 60S ribosomal protein L6, mitochondrial OS=Marchantia polymorpha |
Align length |
88 |
Score (bit) |
152.0 |
E-value |
1.0e-36 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK952806|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0015_B14, 5' (554 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P26861|RM06_MARPO 60S ribosomal protein L6, mitochondrial OS=... 152 1e-36 sp|P26872|RT13_MARPO Ribosomal protein S13, mitochondrial OS=Mar... 83 3e-24 sp|O23049|RK6_ARATH 50S ribosomal protein L6, chloroplastic OS=A... 82 2e-15 sp|A6W377|RL6_MARMS 50S ribosomal protein L6 OS=Marinomonas sp. ... 81 3e-15 sp|A8LM72|RL6_DINSH 50S ribosomal protein L6 OS=Dinoroseobacter ... 81 4e-15 sp|A4YSK7|RL6_BRASO 50S ribosomal protein L6 OS=Bradyrhizobium s... 81 4e-15 sp|A5ELL2|RL6_BRASB 50S ribosomal protein L6 OS=Bradyrhizobium s... 81 4e-15 sp|Q8EUC8|RL6_MYCPE 50S ribosomal protein L6 OS=Mycoplasma penet... 80 5e-15 sp|P04448|RL6_MYCCT 50S ribosomal protein L6 OS=Mycoplasma capri... 80 7e-15 sp|O21255|RM06_RECAM 60S ribosomal protein L6, mitochondrial OS=... 79 1e-14 sp|Q6MSP0|RL6_MYCMS 50S ribosomal protein L6 OS=Mycoplasma mycoi... 79 1e-14 sp|A7HWS6|RL6_PARL1 50S ribosomal protein L6 OS=Parvibaculum lav... 78 3e-14 sp|A1T0C7|RL6_PSYIN 50S ribosomal protein L6 OS=Psychromonas ing... 78 3e-14 sp|Q3SSV1|RL6_NITWN 50S ribosomal protein L6 OS=Nitrobacter wino... 77 4e-14 sp|Q28UT9|RL6_JANSC 50S ribosomal protein L6 OS=Jannaschia sp. (... 77 4e-14 sp|Q7M8E7|RL6_WOLSU 50S ribosomal protein L6 OS=Wolinella succin... 77 6e-14 sp|A8GT54|RL6_RICRS 50S ribosomal protein L6 OS=Rickettsia ricke... 77 6e-14 sp|B0BUP5|RL6_RICRO 50S ribosomal protein L6 OS=Rickettsia ricke... 77 6e-14 sp|A8F2D2|RL6_RICM5 50S ribosomal protein L6 OS=Rickettsia massi... 77 6e-14 sp|Q4UMR4|RL6_RICFE 50S ribosomal protein L6 OS=Rickettsia felis... 77 6e-14 sp|Q6N4U8|RL6_RHOPA 50S ribosomal protein L6 OS=Rhodopseudomonas... 77 6e-14 sp|Q9Z7S1|RL6_CHLPN 50S ribosomal protein L6 OS=Chlamydia pneumo... 77 6e-14 sp|Q0VSI8|RL6_ALCBS 50S ribosomal protein L6 OS=Alcanivorax bork... 77 6e-14 sp|Q92GY1|RL6_RICCN 50S ribosomal protein L6 OS=Rickettsia conor... 77 7e-14 sp|A8EZK1|RL6_RICCK 50S ribosomal protein L6 OS=Rickettsia canad... 77 7e-14 sp|Q2RQX5|RL6_RHORT 50S ribosomal protein L6 OS=Rhodospirillum r... 77 7e-14 sp|Q6LVA1|RL6_PHOPR 50S ribosomal protein L6 OS=Photobacterium p... 76 1e-13 sp|Q2W2K6|RL6_MAGMM 50S ribosomal protein L6 OS=Magnetospirillum... 76 1e-13 sp|Q89J99|RL6_BRAJA 50S ribosomal protein L6 OS=Bradyrhizobium j... 76 1e-13 sp|Q68W93|RL6_RICTY 50S ribosomal protein L6 OS=Rickettsia typhi... 76 1e-13
>sp|P26861|RM06_MARPO 60S ribosomal protein L6, mitochondrial OS=Marchantia polymorpha GN=RPL6 PE=3 SV=2 Length = 101
Score = 152 bits (384), Expect = 1e-36 Identities = 72/88 (81%), Positives = 80/88 (90%) Frame = +2
Query: 8 IGYKASTNPQGSVLNLKLGFSHEIRLQVTPSVRVFCLKYNIICCTGTDPQKVTQFAASVK 187 +GYKASTN QGS+L LKLGFSHEIRLQVTPSVRVFCLK N+ICCTG D QKVTQFAA VK Sbjct: 14 VGYKASTNAQGSILYLKLGFSHEIRLQVTPSVRVFCLKPNLICCTGMDHQKVTQFAAIVK 73
Query: 188 SCKPPEVYKGRGIKYQNEIIRRKEGGKK 271 SCKPPEVYKG+GI+Y+NEII +K+G KK Sbjct: 74 SCKPPEVYKGKGIQYRNEIIHKKQGKKK 101
>sp|P26872|RT13_MARPO Ribosomal protein S13, mitochondrial OS=Marchantia polymorpha GN=RPS13 PE=3 SV=2 Length = 120
Score = 82.8 bits (203), Expect(2) = 3e-24 Identities = 43/68 (63%), Positives = 52/68 (76%) Frame = +3
Query: 351 LDPKKATWICDQLGLSDNTKVNNLTRHQINWISKIVRRKKKLVDSELKRGIQENIKRLIN 530 + PKKA +CDQLGLSD KVN LT++Q + I KI+ + LVDSELKR IQ +IKRLI+ Sbjct: 25 IGPKKAIQVCDQLGLSDTIKVNKLTKYQFDQILKII-SQNYLVDSELKRVIQRDIKRLIS 83
Query: 531 ICCYRGFR 554 I CYRGFR Sbjct: 84 IGCYRGFR 91
Score = 49.7 bits (117), Expect(2) = 3e-24 Identities = 22/30 (73%), Positives = 28/30 (93%) Frame = +2
Query: 278 VSYILGTKLVSNKQIRLALTQIFGIGPKKS 367 +SYILGT L SNKQ+++ALT+IFGIGPKK+ Sbjct: 1 MSYILGTNLNSNKQVKIALTRIFGIGPKKA 30
>sp|O23049|RK6_ARATH 50S ribosomal protein L6, chloroplastic OS=Arabidopsis thaliana GN=RPL6 PE=1 SV=1 Length = 223
Score = 81.6 bits (200), Expect = 2e-15 Identities = 41/90 (45%), Positives = 63/90 (70%), Gaps = 2/90 (2%) Frame = +2
Query: 8 IGYKASTNPQGSVLNLKLGFSHEIRLQVTPSVRVFCLKYNIICCTGTDPQKVTQFAASVK 187 +GY+A+ + + VLNL GFSH +++Q+ S++V + I +G D ++ QFAA+V+ Sbjct: 135 VGYRATVDGKELVLNL--GFSHPVKMQIPDSLKVKVEENTRITVSGYDKSEIGQFAATVR 192
Query: 188 SCKPPEVYKGRGIKYQNEIIRRKEG--GKK 271 +PPE YKG+G+KY +EI+RRKEG GKK Sbjct: 193 KWRPPEPYKGKGVKYSDEIVRRKEGKAGKK 222
>sp|A6W377|RL6_MARMS 50S ribosomal protein L6 OS=Marinomonas sp. (strain MWYL1) GN=rplF PE=3 SV=1 Length = 177
Score = 81.3 bits (199), Expect = 3e-15 Identities = 41/90 (45%), Positives = 56/90 (62%) Frame = +2
Query: 2 QIIGYKASTNPQGSVLNLKLGFSHEIRLQVTPSVRVFCLKYNIICCTGTDPQKVTQFAAS 181 Q +GY+A+ +G+VLNL LGFSH + ++ V C I G D Q V Q AA Sbjct: 90 QGVGYRAAL--KGNVLNLSLGFSHPVDYELPEGVTAECASQTEIVIRGIDKQAVGQVAAE 147
Query: 182 VKSCKPPEVYKGRGIKYQNEIIRRKEGGKK 271 V+ +PPE YKG+G++Y +E+IRRKE KK Sbjct: 148 VRGFRPPEPYKGKGVRYSDEVIRRKEAKKK 177
>sp|A8LM72|RL6_DINSH 50S ribosomal protein L6 OS=Dinoroseobacter shibae (strain DFL 12) GN=rplF PE=3 SV=1 Length = 177
Score = 80.9 bits (198), Expect = 4e-15 Identities = 43/90 (47%), Positives = 55/90 (61%) Frame = +2
Query: 2 QIIGYKASTNPQGSVLNLKLGFSHEIRLQVTPSVRVFCLKYNIICCTGTDPQKVTQFAAS 181 Q +GY+A QG+ L L LG SHE+ +V V V C K I GTD Q V Q AA+ Sbjct: 90 QGVGYRAQM--QGNTLKLNLGLSHEVNYEVPAGVTVTCPKVTEIVIEGTDEQLVGQVAAN 147
Query: 182 VKSCKPPEVYKGRGIKYQNEIIRRKEGGKK 271 ++ + PE YKG+GI+Y+ E I RKEG KK Sbjct: 148 IRDWRKPEPYKGKGIRYKGEFIFRKEGKKK 177
>sp|A4YSK7|RL6_BRASO 50S ribosomal protein L6 OS=Bradyrhizobium sp. (strain ORS278) GN=rplF PE=3 SV=1 Length = 177
Score = 80.9 bits (198), Expect = 4e-15 Identities = 40/88 (45%), Positives = 56/88 (63%) Frame = +2
Query: 8 IGYKASTNPQGSVLNLKLGFSHEIRLQVTPSVRVFCLKYNIICCTGTDPQKVTQFAASVK 187 +GY+A+ QG L L LG+SH++ Q+ + + K I TG DPQ+V Q AA ++ Sbjct: 92 VGYRAAM--QGKNLQLALGYSHDVVYQIPEGITIAVPKPTEITITGIDPQRVGQVAAEIR 149
Query: 188 SCKPPEVYKGRGIKYQNEIIRRKEGGKK 271 + +PPE YKG+G+KY E I RKEG KK Sbjct: 150 AYRPPEPYKGKGVKYAGEFIFRKEGKKK 177
>sp|A5ELL2|RL6_BRASB 50S ribosomal protein L6 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=rplF PE=3 SV=1 Length = 177
Score = 80.9 bits (198), Expect = 4e-15 Identities = 40/88 (45%), Positives = 56/88 (63%) Frame = +2
Query: 8 IGYKASTNPQGSVLNLKLGFSHEIRLQVTPSVRVFCLKYNIICCTGTDPQKVTQFAASVK 187 +GY+A+ QG L L LG+SH++ Q+ + + K I TG DPQ+V Q AA ++ Sbjct: 92 VGYRAAM--QGKNLQLALGYSHDVVYQIPEGITIAVPKPTEITVTGIDPQRVGQVAAEIR 149
Query: 188 SCKPPEVYKGRGIKYQNEIIRRKEGGKK 271 + +PPE YKG+G+KY E I RKEG KK Sbjct: 150 AYRPPEPYKGKGVKYAGEFIFRKEGKKK 177
>sp|Q8EUC8|RL6_MYCPE 50S ribosomal protein L6 OS=Mycoplasma penetrans GN=rplF PE=3 SV=1 Length = 183
Score = 80.5 bits (197), Expect = 5e-15 Identities = 42/93 (45%), Positives = 58/93 (62%), Gaps = 5/93 (5%) Frame = +2
Query: 8 IGYKASTNPQGSVLNLKLGFSHEIRLQVTPSVRVFCLKYNIICCTGTDPQKVTQFAASVK 187 +GYKA+ N G+ +NL LG+SH I L++ + V C + + TG D V QFAA ++ Sbjct: 93 VGYKAAVN--GNKINLNLGYSHPIDLEIPAGLNVTCPQATEVVITGADKAVVGQFAAVIR 150
Query: 188 SCKPPEVYKGRGIKYQNEIIRRK-----EGGKK 271 S +PPE YKG+G+ Y NE+I RK EG KK Sbjct: 151 SKRPPEPYKGKGVAYSNEVIIRKVGKTAEGSKK 183
>sp|P04448|RL6_MYCCT 50S ribosomal protein L6 OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) GN=rplF PE=3 SV=1 Length = 180
Score = 80.1 bits (196), Expect = 7e-15 Identities = 40/85 (47%), Positives = 56/85 (65%) Frame = +2
Query: 8 IGYKASTNPQGSVLNLKLGFSHEIRLQVTPSVRVFCLKYNIICCTGTDPQKVTQFAASVK 187 +GYKA+ N GS LNL LG+SH + ++ V + +K + TG D Q V Q AA+++ Sbjct: 93 VGYKAAVN--GSKLNLSLGYSHPVEFEIPDGVVIQAVKPTELAITGIDKQLVGQVAANIR 150
Query: 188 SCKPPEVYKGRGIKYQNEIIRRKEG 262 + + PE YKG+GIKY+NE I RKEG Sbjct: 151 AYRKPEPYKGKGIKYKNETIIRKEG 175
>sp|O21255|RM06_RECAM 60S ribosomal protein L6, mitochondrial OS=Reclinomonas americana GN=RPL6 PE=3 SV=1 Length = 185
Score = 79.3 bits (194), Expect = 1e-14 Identities = 41/88 (46%), Positives = 56/88 (63%) Frame = +2
Query: 8 IGYKASTNPQGSVLNLKLGFSHEIRLQVTPSVRVFCLKYNIICCTGTDPQKVTQFAASVK 187 +GYKA + VL K+GFS EI ++ ++V C + NII +G D QKV Q AA ++ Sbjct: 100 VGYKAQLIDKKLVL--KIGFSIEINYEIPSDIKVDCSRSNIIVISGIDKQKVNQVAAEIR 157
Query: 188 SCKPPEVYKGRGIKYQNEIIRRKEGGKK 271 + PE YKG+GI+Y E+IR KEG KK Sbjct: 158 LLRKPEPYKGKGIRYLGEVIRLKEGKKK 185
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q1XG95 |
Definition |
tr|Q1XG95|Q1XG95_PHYPA Ribosomal protein L6 OS=Physcomitrella patens |
Align length |
88 |
Score (bit) |
150.0 |
E-value |
3.0e-35 |
Report |
|