| DK952815 |
| Clone id |
TST38A01NGRL0015_B23 |
| Library |
TST38 |
| Length |
566 |
| Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0015_B23. 5' end sequence. |
| Accession |
DK952815 |
| Tissue type |
prothallia |
| Developmental stage |
gametophyte |
| Contig ID |
CL2239Contig1 |
| Sequence |
AGCTCGACCACCAGCTTCCAATTCGCTTCTCAAGTTCGCTGACCTTGAAGCCAAAACAAA CAGGGGGATAACGCTCGCGTCCTCAGAGAGAGAGAGATGGGGAAGGCGAAAAAAACCAGA AAGTTCGCTCAGATGAAACGCATGCTCACGCCTGCTGCTTTGCGCCAGCATAAGCAAGAT GTTTTAAATGCTGTGAAGAAGGATTCAGGGAAGGAAAAGCTACCTAGAAACGTACCAAAT GTATCCTCGGCCTTGTTTTTCAAGTATAACACTGCGCTTGGCCCTCCTTATCAAGTGCTT GTGGACACCAATTTCATCAATTTCTCAATTCAAAACAAGTTGGACTTGGAGAAAGCGATG ATGGATTGTTTGTATGCAAAATGTACTCCATGCATTACGGATTGTGTTATGGCCGAGCTA GAAAAGCTTGGACAAAAATATCGGGTTGCTCTTAGAGTTGCGAAGGATCCCAGATTTGAG CAGTTACCTTGCACACACAAAGGAACTTATGCAGATGATTGTATTGTTGATAGAGTTACT CAAACATAAATGCTATATAGTGGCTA |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
Q5RFQ0 |
| Definition |
sp|Q5RFQ0|FCF1_PONAB rRNA-processing protein FCF1 homolog OS=Pongo abelii |
| Align length |
151 |
| Score (bit) |
213.0 |
| E-value |
7.0e-55 |
| Report |
 |
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
A9T238 |
| Definition |
tr|A9T238|A9T238_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
| Align length |
149 |
| Score (bit) |
271.0 |
| E-value |
2.0e-71 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK952815|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0015_B23, 5' (566 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9T238|A9T238_PHYPA Predicted protein OS=Physcomitrella paten... 271 2e-71 tr|A9RIF1|A9RIF1_PHYPA Predicted protein OS=Physcomitrella paten... 265 2e-69 tr|A7R812|A7R812_VITVI Chromosome undetermined scaffold_2152, wh... 261 2e-68 tr|A7PZQ1|A7PZQ1_VITVI Chromosome chr15 scaffold_40, whole genom... 261 2e-68 tr|Q5VMX2|Q5VMX2_ORYSJ Os06g0158600 protein OS=Oryza sativa subs... 246 8e-64 tr|B8B320|B8B320_ORYSI Putative uncharacterized protein OS=Oryza... 246 8e-64 tr|B4FS24|B4FS24_MAIZE Nucleolar protein involved in pre-mRNA pr... 245 1e-63 tr|A3B8K9|A3B8K9_ORYSJ Putative uncharacterized protein OS=Oryza... 238 2e-61 tr|O82346|O82346_ARATH Expressed protein (At2g46230/T3F17.12) OS... 231 3e-59 tr|A8MRJ0|A8MRJ0_ARATH Uncharacterized protein At2g46230.2 OS=Ar... 231 3e-59 tr|Q4FZ45|Q4FZ45_HUMAN Putative uncharacterized protein DKFZp686... 213 8e-54 tr|Q1RP75|Q1RP75_RAT ZH10 protein OS=Rattus norvegicus GN=RGD131... 211 2e-53 tr|A8J3T9|A8J3T9_CHLRE Predicted protein OS=Chlamydomonas reinha... 207 3e-52 tr|Q6C4V5|Q6C4V5_YARLI YALI0E23386p OS=Yarrowia lipolytica GN=YA... 206 7e-52 tr|B5X5A6|B5X5A6_SALSA rRNA-processing protein FCF1 homolog OS=S... 205 2e-51 tr|A7R8W4|A7R8W4_VITVI Chromosome undetermined scaffold_3033, wh... 204 2e-51 tr|B5X7B1|B5X7B1_SALSA rRNA-processing protein FCF1 homolog OS=S... 203 5e-51 tr|A8N5S3|A8N5S3_COPC7 Putative uncharacterized protein OS=Copri... 202 8e-51 tr|Q6DIE8|Q6DIE8_XENTR MGC89599 protein OS=Xenopus tropicalis GN... 202 1e-50 tr|B8CA74|B8CA74_THAPS Predicted protein OS=Thalassiosira pseudo... 201 2e-50 tr|A7TG92|A7TG92_VANPO Putative uncharacterized protein OS=Vande... 199 9e-50 tr|Q6NUA5|Q6NUA5_XENLA MGC81107 protein OS=Xenopus laevis GN=MGC... 199 1e-49 tr|Q568H9|Q568H9_DANRE Zgc:110288 OS=Danio rerio GN=zgc:110288 P... 196 7e-49 tr|Q96UM4|Q96UM4_CANGA Similar to uniprot|Q05498 Saccharomyces c... 195 1e-48 tr|Q6CXM8|Q6CXM8_KLULA KLLA0A07018p OS=Kluyveromyces lactis GN=K... 195 1e-48 tr|B6MED3|B6MED3_BRAFL Putative uncharacterized protein OS=Branc... 194 2e-48 tr|B6QTN6|B6QTN6_PENMA DUF652 domain protein OS=Penicillium marn... 194 2e-48 tr|A6ZYU1|A6ZYU1_YEAS7 Faf1p copurifying factor OS=Saccharomyces... 194 2e-48 tr|Q757W4|Q757W4_ASHGO AEL102Wp OS=Ashbya gossypii GN=AEL102W PE... 193 5e-48 tr|Q6BIU1|Q6BIU1_DEBHA DEHA2G07656p OS=Debaryomyces hansenii GN=... 193 5e-48
>tr|A9T238|A9T238_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_190857 PE=4 SV=1 Length = 198
Score = 271 bits (692), Expect = 2e-71 Identities = 130/149 (87%), Positives = 139/149 (93%) Frame = +1
Query: 97 MGKAKKTRKFAQMKRMLTPAALRQHKQDVLNAVKKDSGKEKLPRNVPNVSSALFFKYNTA 276 M KAKKTRKFAQ+KRML P A++Q+K DVLN +KD+ EKLPRNVPN SSALFFK+NTA Sbjct: 1 MTKAKKTRKFAQVKRMLAPKAIKQYKDDVLNPKRKDTSLEKLPRNVPNTSSALFFKHNTA 60
Query: 277 LGPPYQVLVDTNFINFSIQNKLDLEKAMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 456 LGPPYQVLVDTNFINFSIQNKLDLEKAMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR Sbjct: 61 LGPPYQVLVDTNFINFSIQNKLDLEKAMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120
Query: 457 VAKDPRFEQLPCTHKGTYADDCIVDRVTQ 543 VAKDPRFE LPCTHKGTYADDCIV+RVT+ Sbjct: 121 VAKDPRFETLPCTHKGTYADDCIVERVTR 149
>tr|A9RIF1|A9RIF1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_104637 PE=4 SV=1 Length = 198
Score = 265 bits (676), Expect = 2e-69 Identities = 126/149 (84%), Positives = 137/149 (91%) Frame = +1
Query: 97 MGKAKKTRKFAQMKRMLTPAALRQHKQDVLNAVKKDSGKEKLPRNVPNVSSALFFKYNTA 276 M KA KTRKFAQ+KR+L P ++Q+K DVLN +KD+ EKLPRNVPN SSALFFK+N+A Sbjct: 1 MTKASKTRKFAQLKRILAPKGIKQYKDDVLNPKRKDTSLEKLPRNVPNTSSALFFKHNSA 60
Query: 277 LGPPYQVLVDTNFINFSIQNKLDLEKAMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 456 LGPPYQVLVDTNFINFSIQNKLDLEKAMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR Sbjct: 61 LGPPYQVLVDTNFINFSIQNKLDLEKAMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120
Query: 457 VAKDPRFEQLPCTHKGTYADDCIVDRVTQ 543 VAKDPRFE LPCTHKGTYADDCIV+RVT+ Sbjct: 121 VAKDPRFETLPCTHKGTYADDCIVERVTR 149
>tr|A7R812|A7R812_VITVI Chromosome undetermined scaffold_2152, whole genome shotgun sequence (Fragment) OS=Vitis vinifera GN=GSVIVT00011110001 PE=4 SV=1 Length = 149
Score = 261 bits (666), Expect = 2e-68 Identities = 125/149 (83%), Positives = 135/149 (90%) Frame = +1
Query: 97 MGKAKKTRKFAQMKRMLTPAALRQHKQDVLNAVKKDSGKEKLPRNVPNVSSALFFKYNTA 276 MGKAKK +KFA MK+M+T AL++HK++VLN KKD KEK RNVP V SALFFKYNTA Sbjct: 1 MGKAKKAQKFAVMKKMVTSKALKKHKEEVLNPTKKDENKEKTSRNVPYVPSALFFKYNTA 60
Query: 277 LGPPYQVLVDTNFINFSIQNKLDLEKAMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 456 LGPPY+VLVDTNFINFSIQNKLDLEK MMDCLYAKCTPCITDCVMAELEKLGQKYRVALR Sbjct: 61 LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120
Query: 457 VAKDPRFEQLPCTHKGTYADDCIVDRVTQ 543 +AKDPRFE+L CTHKGTYADDCIVDRVTQ Sbjct: 121 IAKDPRFERLLCTHKGTYADDCIVDRVTQ 149
>tr|A7PZQ1|A7PZQ1_VITVI Chromosome chr15 scaffold_40, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00026962001 PE=4 SV=1 Length = 204
Score = 261 bits (666), Expect = 2e-68 Identities = 125/149 (83%), Positives = 135/149 (90%) Frame = +1
Query: 97 MGKAKKTRKFAQMKRMLTPAALRQHKQDVLNAVKKDSGKEKLPRNVPNVSSALFFKYNTA 276 MGKAKK +KFA MK+M+T AL++HK++VLN KKD KEK RNVP V SALFFKYNTA Sbjct: 1 MGKAKKAQKFAVMKKMVTSKALKKHKEEVLNPTKKDENKEKTSRNVPYVPSALFFKYNTA 60
Query: 277 LGPPYQVLVDTNFINFSIQNKLDLEKAMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 456 LGPPY+VLVDTNFINFSIQNKLDLEK MMDCLYAKCTPCITDCVMAELEKLGQKYRVALR Sbjct: 61 LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120
Query: 457 VAKDPRFEQLPCTHKGTYADDCIVDRVTQ 543 +AKDPRFE+L CTHKGTYADDCIVDRVTQ Sbjct: 121 IAKDPRFERLLCTHKGTYADDCIVDRVTQ 149
>tr|Q5VMX2|Q5VMX2_ORYSJ Os06g0158600 protein OS=Oryza sativa subsp. japonica GN=P0702F05.21 PE=2 SV=1 Length = 199
Score = 246 bits (627), Expect = 8e-64 Identities = 118/150 (78%), Positives = 135/150 (90%), Gaps = 1/150 (0%) Frame = +1
Query: 97 MGKAK-KTRKFAQMKRMLTPAALRQHKQDVLNAVKKDSGKEKLPRNVPNVSSALFFKYNT 273 MG+AK K KFA +K+++T ++++K+DVLN KKD+ KEKL RNVP VSSALFF YNT Sbjct: 1 MGRAKSKGPKFAAVKKIITKKTIQKYKEDVLNPKKKDNEKEKLGRNVPQVSSALFFSYNT 60
Query: 274 ALGPPYQVLVDTNFINFSIQNKLDLEKAMMDCLYAKCTPCITDCVMAELEKLGQKYRVAL 453 ALGPPY+V+VDTNFINFSIQNKLDLEK MMDCLYAKCTPCITDCVMAELEKLGQKYRVAL Sbjct: 61 ALGPPYRVIVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVAL 120
Query: 454 RVAKDPRFEQLPCTHKGTYADDCIVDRVTQ 543 R+AKDPRF++L CTHKGTYADDCIV+RVTQ Sbjct: 121 RIAKDPRFQRLACTHKGTYADDCIVERVTQ 150
>tr|B8B320|B8B320_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_21758 PE=4 SV=1 Length = 199
Score = 246 bits (627), Expect = 8e-64 Identities = 118/150 (78%), Positives = 135/150 (90%), Gaps = 1/150 (0%) Frame = +1
Query: 97 MGKAK-KTRKFAQMKRMLTPAALRQHKQDVLNAVKKDSGKEKLPRNVPNVSSALFFKYNT 273 MG+AK K KFA +K+++T ++++K+DVLN KKD+ KEKL RNVP VSSALFF YNT Sbjct: 1 MGRAKSKGPKFAAVKKIITKKTIQKYKEDVLNPKKKDNEKEKLGRNVPQVSSALFFSYNT 60
Query: 274 ALGPPYQVLVDTNFINFSIQNKLDLEKAMMDCLYAKCTPCITDCVMAELEKLGQKYRVAL 453 ALGPPY+V+VDTNFINFSIQNKLDLEK MMDCLYAKCTPCITDCVMAELEKLGQKYRVAL Sbjct: 61 ALGPPYRVIVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVAL 120
Query: 454 RVAKDPRFEQLPCTHKGTYADDCIVDRVTQ 543 R+AKDPRF++L CTHKGTYADDCIV+RVTQ Sbjct: 121 RIAKDPRFQRLACTHKGTYADDCIVERVTQ 150
>tr|B4FS24|B4FS24_MAIZE Nucleolar protein involved in pre-mRNA processing OS=Zea mays PE=2 SV=1 Length = 199
Score = 245 bits (626), Expect = 1e-63 Identities = 119/150 (79%), Positives = 133/150 (88%), Gaps = 1/150 (0%) Frame = +1
Query: 97 MGKAK-KTRKFAQMKRMLTPAALRQHKQDVLNAVKKDSGKEKLPRNVPNVSSALFFKYNT 273 MGKAK K KFA +K+++T + ++K+DVLN KKD KEKL RNVP VSSALFF YNT Sbjct: 1 MGKAKSKGPKFAAVKKIITKKTINKYKEDVLNHKKKDVDKEKLGRNVPQVSSALFFSYNT 60
Query: 274 ALGPPYQVLVDTNFINFSIQNKLDLEKAMMDCLYAKCTPCITDCVMAELEKLGQKYRVAL 453 ALGPPY+V+VDTNFINFSIQNKLDLEK MMDCLYAKCTPCITDCVMAELEKLGQKYRVAL Sbjct: 61 ALGPPYRVIVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVAL 120
Query: 454 RVAKDPRFEQLPCTHKGTYADDCIVDRVTQ 543 R+AKDPRF++L CTHKGTYADDCIV+RVTQ Sbjct: 121 RIAKDPRFQRLACTHKGTYADDCIVERVTQ 150
>tr|A3B8K9|A3B8K9_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_019381 PE=4 SV=1 Length = 206
Score = 238 bits (607), Expect = 2e-61 Identities = 118/159 (74%), Positives = 135/159 (84%), Gaps = 10/159 (6%) Frame = +1
Query: 97 MGKAK-KTRKFAQMKRMLTPAALRQHKQDVLNAVKKDSGKEKLPRNVPNVSSALFFKYNT 273 MG+AK K KFA +K+++T ++++K+DVLN KKD+ KEKL RNVP VSSALFF YNT Sbjct: 1 MGRAKSKGPKFAAVKKIITKKTIQKYKEDVLNPKKKDNEKEKLGRNVPQVSSALFFSYNT 60
Query: 274 ALGPPYQVLVDTNFINFSIQNKL---------DLEKAMMDCLYAKCTPCITDCVMAELEK 426 ALGPPY+V+VDTNFINFSIQNKL DLEK MMDCLYAKCTPCITDCVMAELEK Sbjct: 61 ALGPPYRVIVDTNFINFSIQNKLNASLTPMQLDLEKGMMDCLYAKCTPCITDCVMAELEK 120
Query: 427 LGQKYRVALRVAKDPRFEQLPCTHKGTYADDCIVDRVTQ 543 LGQKYRVALR+AKDPRF++L CTHKGTYADDCIV+RVTQ Sbjct: 121 LGQKYRVALRIAKDPRFQRLACTHKGTYADDCIVERVTQ 159
>tr|O82346|O82346_ARATH Expressed protein (At2g46230/T3F17.12) OS=Arabidopsis thaliana GN=At2g46230 PE=2 SV=2 Length = 196
Score = 231 bits (588), Expect = 3e-59 Identities = 110/149 (73%), Positives = 128/149 (85%) Frame = +1
Query: 97 MGKAKKTRKFAQMKRMLTPAALRQHKQDVLNAVKKDSGKEKLPRNVPNVSSALFFKYNTA 276 MGKAKK +KFA +K+M++ AL+ +K++VLN KKD +LPRNVP+V + LFF YN+ Sbjct: 1 MGKAKKPQKFAVVKKMISHKALKHYKEEVLNPNKKDL--TELPRNVPSVPAGLFFSYNST 58
Query: 277 LGPPYQVLVDTNFINFSIQNKLDLEKAMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 456 L PPY+VLVDTNFINFSIQNK+DLEK M DCLYA CTPCITDCVMAELEKLGQKYRVALR Sbjct: 59 LVPPYRVLVDTNFINFSIQNKIDLEKGMRDCLYANCTPCITDCVMAELEKLGQKYRVALR 118
Query: 457 VAKDPRFEQLPCTHKGTYADDCIVDRVTQ 543 +AKDP FE+LPC HKGTYADDC+VDRVTQ Sbjct: 119 IAKDPHFERLPCIHKGTYADDCLVDRVTQ 147
>tr|A8MRJ0|A8MRJ0_ARATH Uncharacterized protein At2g46230.2 OS=Arabidopsis thaliana GN=At2g46230 PE=4 SV=1 Length = 181
Score = 231 bits (588), Expect = 3e-59 Identities = 110/149 (73%), Positives = 128/149 (85%) Frame = +1
Query: 97 MGKAKKTRKFAQMKRMLTPAALRQHKQDVLNAVKKDSGKEKLPRNVPNVSSALFFKYNTA 276 MGKAKK +KFA +K+M++ AL+ +K++VLN KKD +LPRNVP+V + LFF YN+ Sbjct: 1 MGKAKKPQKFAVVKKMISHKALKHYKEEVLNPNKKDL--TELPRNVPSVPAGLFFSYNST 58
Query: 277 LGPPYQVLVDTNFINFSIQNKLDLEKAMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 456 L PPY+VLVDTNFINFSIQNK+DLEK M DCLYA CTPCITDCVMAELEKLGQKYRVALR Sbjct: 59 LVPPYRVLVDTNFINFSIQNKIDLEKGMRDCLYANCTPCITDCVMAELEKLGQKYRVALR 118
Query: 457 VAKDPRFEQLPCTHKGTYADDCIVDRVTQ 543 +AKDP FE+LPC HKGTYADDC+VDRVTQ Sbjct: 119 IAKDPHFERLPCIHKGTYADDCLVDRVTQ 147
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