DK952816 [AcEST]

DK952816
Clone id	TST38A01NGRL0015_B24
Library	TST38
Length	602
Definition	Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0015_B24. 5' end sequence.
Accession	DK952816
Tissue type	prothallia
Developmental stage	gametophyte
Contig ID	CL443Contig1
Sequence	AATTTGAGTTGTTAAAACTGCACTTAATATAATCAGGGACAAAACTGTATATTATTTGTA CAATTATCTGACTAAAGAGTGTCTTATCAAAGCTTGTGATAGGGACTACTTGTTTTTGTA AGTCTTTTTCTAAGGGTGTGGCCCCGTGTGCTCATGCGCCTACACTTGTATATACTAGCC CAAATGAGCCCTCTTTGGAAGCTGGGTTTGGCTATCAACTGAAGAGACCAAGTTGAGAAG TTCTCAACGAAAGGTTGCACGGAGTCGGTGCTTTTAAGGAGTCAGATGATGGCCAAGAAG CGGTGGACAAACTTGGTCAAATGAGGCCAAGAAAGATACCTTGGAGTTCGGATGCTCACT ATATGATGGGTGGGCTGTAAAGATGGCAAGCAAGCCATGCCTGACTCTTGGAAAGCTATG GGTGACAACCCCCTCATCTAAGAAATCAAGCATGGAACCAAGTTTGCCTCCGTCATAAAC TCTTGAAAGTGTATGAAGCTCTTGCCCCTCACTTACCTTTCTTCATTGACGTGTATGTCC TCTGCCTAGTCTGAACCCGGCCTAAGAGGCCAGCTTCTTTTTCAAAAAAAAAAAAAAAAA AA
■■Homology search results ■■	-
Swiss-Prot (release 56.9)	Link to BlastX Result : Swiss-Prot
sp_hit_id	Q9ZJ65
Definition	sp\|Q9ZJ65\|SECF_HELPJ Protein-export membrane protein secF OS=Helicobacter pylori J99
Align length	39
Score (bit)	31.6
E-value	3.0
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK952816\|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0015_B24, 5' (583 letters) Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp\|Q9ZJ65\|SECF_HELPJ Protein-export membrane protein secF OS=Hel... 32 3.0 >sp\|Q9ZJ65\|SECF_HELPJ Protein-export membrane protein secF OS=Helicobacter pylori J99 GN=secF PE=3 SV=1 Length = 323 Score = 31.6 bits (70), Expect = 3.0 Identities = 13/39 (33%), Positives = 25/39 (64%) Frame = -2 Query: 576 KLASAGFRLGRGHTRQRKVSEGQELHTLSRVYDGGKL 460 K+A GF +G+ + + RK+ + QE + R+Y+GG++ Sbjct: 285 KVALLLGFDMGKYYENEARKIKKAQEKEKMRRLYEGGQV 323
TrEMBL (release 39.9)	Link to BlastX Result : TrEMBL
tr_hit_id	-
Definition	No hits.
Align length	-
Score (bit)	-
E-value	-
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK952816\|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0015_B24, 5' (583 letters) Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters Searching..................................................done *** No hits found ****