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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK952833
Clone id TST38A01NGRL0015_C17
Library
Length 643
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0015_C17. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CGCGAAGGGCACATCACCGACGCCACTCTTCGTCTGCATAGAAACACTGGCTCTGATTCT
CGAAGGACCTCTAGCGGATATCTACTATTCTTCAACCTGGCTAGATCACGTTCACACACA
GCCACACACACACACAGCTTTACGGGTAGGCTTTGTGGTCTCACATTCGCAGAACAGCTA
AAATGCCGGGCCCCGGAACAGCTTCTGTGGAAAATTCTGCCCTTCTCAATGAGGTAGACG
AGATGTTTGATGAGCTGAAGAAGAAGAAGAAAAAAGAGAAGAAGAACCCCACAGTCCTGT
ATGGCGGAGAAGCTATGGAGTCACTCGAACCTAGTAGCCCACCTAGTCAAAAGAAGACAA
AGAAGAAAAGCAAGGAGAAGGTGCTCTTTGAGGATCCTTCACCAGCGTTAGATAAGAGCG
CGTCTAAGTCAAAAAAGAGCAAGAAAAGGAAGCCAGATGAGCCTCTTGATTCAGAGCCGG
AATTGAAGGTTTCGAAAGTTGAACAGAGTGAGAGTGAAGAATCAAGTGAGGTTATCAATC
CATATGCAGTAAGTAATTTTAGAATATCAGAAGCCCTGAGGAGAAAGCTGAAGACAAAAG
GAATAGAGGCTCTGTTCCCCATTCAAGCTCTTACATTCAATGC
■■Homology search results ■■ -
sp_hit_id Q650T9
Definition sp|Q650T9|RH7_ORYSJ DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa subsp. japonica
Align length 35
Score (bit) 53.9
E-value 7.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952833|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0015_C17, 5'
         (643 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q650T9|RH7_ORYSJ DEAD-box ATP-dependent RNA helicase 7 OS=Ory...    54   7e-07
sp|Q39189|RH7_ARATH DEAD-box ATP-dependent RNA helicase 7 OS=Ara...    52   3e-06
sp|Q41382|RH7_SPIOL DEAD-box ATP-dependent RNA helicase 7 OS=Spi...    45   3e-04
sp|Q3B8Q1|DDX21_RAT Nucleolar RNA helicase 2 OS=Rattus norvegicu...    37   0.11 
sp|Q9JIK5|DDX21_MOUSE Nucleolar RNA helicase 2 OS=Mus musculus G...    37   0.11 
sp|Q9NR30|DDX21_HUMAN Nucleolar RNA helicase 2 OS=Homo sapiens G...    35   0.25 
sp|Q99MJ9|DDX50_MOUSE ATP-dependent RNA helicase DDX50 OS=Mus mu...    34   0.74 
sp|Q9BQ39|DDX50_HUMAN ATP-dependent RNA helicase DDX50 OS=Homo s...    33   0.96 
sp|Q58796|Y1401_METJA Probable ATP-dependent helicase MJ1401 OS=...    30   8.1  

>sp|Q650T9|RH7_ORYSJ DEAD-box ATP-dependent RNA helicase 7 OS=Oryza
           sativa subsp. japonica GN=Os09g0520700 PE=2 SV=1
          Length = 696

 Score = 53.9 bits (128), Expect = 7e-07
 Identities = 25/35 (71%), Positives = 32/35 (91%)
 Frame = +3

Query: 537 NPYAVSNFRISEALRRKLKTKGIEALFPIQALTFN 641
           +P A++NFRISE+LR KLK+KGI+ALFPIQA TF+
Sbjct: 113 DPNALANFRISESLREKLKSKGIKALFPIQATTFD 147


>sp|Q39189|RH7_ARATH DEAD-box ATP-dependent RNA helicase 7
           OS=Arabidopsis thaliana GN=RH7 PE=2 SV=2
          Length = 671

 Score = 51.6 bits (122), Expect = 3e-06
 Identities = 26/35 (74%), Positives = 27/35 (77%)
 Frame = +3

Query: 537 NPYAVSNFRISEALRRKLKTKGIEALFPIQALTFN 641
           NP AVS FRIS  LR KLK  GIEALFPIQA TF+
Sbjct: 94  NPNAVSKFRISAPLREKLKANGIEALFPIQASTFD 128


>sp|Q41382|RH7_SPIOL DEAD-box ATP-dependent RNA helicase 7
           OS=Spinacia oleracea GN=RH7 PE=2 SV=1
          Length = 685

 Score = 45.1 bits (105), Expect = 3e-04
 Identities = 21/35 (60%), Positives = 30/35 (85%)
 Frame = +3

Query: 537 NPYAVSNFRISEALRRKLKTKGIEALFPIQALTFN 641
           +P ++SNFRIS+ L+  L +KGI+ALFPIQA+TF+
Sbjct: 105 DPNSLSNFRISKPLKDVLISKGIKALFPIQAMTFD 139


>sp|Q3B8Q1|DDX21_RAT Nucleolar RNA helicase 2 OS=Rattus norvegicus
           GN=Ddx21 PE=2 SV=1
          Length = 782

 Score = 36.6 bits (83), Expect = 0.11
 Identities = 18/32 (56%), Positives = 22/32 (68%)
 Frame = +3

Query: 546 AVSNFRISEALRRKLKTKGIEALFPIQALTFN 641
           A SNF ISE   + LK +G+  LFPIQA TF+
Sbjct: 183 AFSNFPISEETVKLLKARGVNFLFPIQAKTFH 214


>sp|Q9JIK5|DDX21_MOUSE Nucleolar RNA helicase 2 OS=Mus musculus
           GN=Ddx21 PE=1 SV=2
          Length = 851

 Score = 36.6 bits (83), Expect = 0.11
 Identities = 18/32 (56%), Positives = 22/32 (68%)
 Frame = +3

Query: 546 AVSNFRISEALRRKLKTKGIEALFPIQALTFN 641
           A SNF ISE   + LK +G+  LFPIQA TF+
Sbjct: 259 AFSNFPISEETVKLLKARGVNFLFPIQAKTFH 290


>sp|Q9NR30|DDX21_HUMAN Nucleolar RNA helicase 2 OS=Homo sapiens
           GN=DDX21 PE=1 SV=5
          Length = 783

 Score = 35.4 bits (80), Expect = 0.25
 Identities = 18/32 (56%), Positives = 22/32 (68%)
 Frame = +3

Query: 546 AVSNFRISEALRRKLKTKGIEALFPIQALTFN 641
           A SNF ISE   + LK +G+  LFPIQA TF+
Sbjct: 187 AFSNFPISEETIKLLKGRGVTFLFPIQAKTFH 218


>sp|Q99MJ9|DDX50_MOUSE ATP-dependent RNA helicase DDX50 OS=Mus
           musculus GN=Ddx50 PE=2 SV=1
          Length = 734

 Score = 33.9 bits (76), Expect = 0.74
 Identities = 17/31 (54%), Positives = 20/31 (64%)
 Frame = +3

Query: 546 AVSNFRISEALRRKLKTKGIEALFPIQALTF 638
           A SNF ISE   + LK +G+  LFPIQ  TF
Sbjct: 135 AFSNFSISEETIKLLKGRGVTYLFPIQVKTF 165


>sp|Q9BQ39|DDX50_HUMAN ATP-dependent RNA helicase DDX50 OS=Homo
           sapiens GN=DDX50 PE=1 SV=1
          Length = 737

 Score = 33.5 bits (75), Expect = 0.96
 Identities = 17/31 (54%), Positives = 20/31 (64%)
 Frame = +3

Query: 546 AVSNFRISEALRRKLKTKGIEALFPIQALTF 638
           A SNF ISE   + LK +G+  LFPIQ  TF
Sbjct: 138 AFSNFPISEETIKLLKGRGVTYLFPIQVKTF 168


>sp|Q58796|Y1401_METJA Probable ATP-dependent helicase MJ1401
           OS=Methanocaldococcus jannaschii GN=MJ1401 PE=3 SV=1
          Length = 808

 Score = 30.4 bits (67), Expect = 8.1
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 534 INPYAVSNFRISEALRRKLKTKGIEALFPIQALT 635
           I  Y +    I E L+  +K++GIE L P+Q L+
Sbjct: 186 IENYKIDELDIPEELKEIIKSRGIEELLPVQTLS 219
tr_hit_id A7QGV9
Definition tr|A7QGV9|A7QGV9_VITVI Chromosome chr16 scaffold_94, whole genome shotgun sequence OS=Vitis vinifera
Align length 35
Score (bit) 58.9
E-value 3.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952833|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0015_C17, 5'
         (643 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7QGV9|A7QGV9_VITVI Chromosome chr16 scaffold_94, whole genom...    59   3e-07
tr|A3C0Q9|A3C0Q9_ORYSJ Putative uncharacterized protein OS=Oryza...    54   8e-06
tr|A6MCY9|A6MCY9_9ORYZ DEAD/DEAH box helicase family protein OS=...    53   1e-05
tr|A2Z376|A2Z376_ORYSI Putative uncharacterized protein OS=Oryza...    53   1e-05
tr|A9SDC8|A9SDC8_PHYPA Predicted protein OS=Physcomitrella paten...    52   2e-05
tr|Q9M6R6|Q9M6R6_PHAAU RNA helicase OS=Phaseolus aureus GN=VRH1 ...    51   7e-05
tr|B4FF50|B4FF50_MAIZE Putative uncharacterized protein OS=Zea m...    50   1e-04
tr|A4V6M8|A4V6M8_DUGJA Nucleolar RNA helicase II/Gu protein (Fra...    38   0.46 
tr|A4RW46|A4RW46_OSTLU Predicted protein OS=Ostreococcus lucimar...    37   0.78 
tr|Q9CWZ5|Q9CWZ5_MOUSE Putative uncharacterized protein OS=Mus m...    37   1.3  
tr|Q8K2L4|Q8K2L4_MOUSE Ddx21 protein (Fragment) OS=Mus musculus ...    37   1.3  
tr|Q6PCP0|Q6PCP0_MOUSE DEAD (Asp-Glu-Ala-Asp) box polypeptide 21...    37   1.3  
tr|Q3ULC7|Q3ULC7_MOUSE Putative uncharacterized protein OS=Mus m...    37   1.3  
tr|Q3TVJ3|Q3TVJ3_MOUSE DEAD (Asp-Glu-Ala-Asp) box polypeptide 21...    37   1.3  
tr|A4FV23|A4FV23_BOVIN DDX21 protein OS=Bos taurus GN=DDX21 PE=2...    36   1.7  
tr|Q4QJI9|Q4QJI9_LEIMA Nucleolar RNA helicase II, putative OS=Le...    36   2.3  
tr|A4HSE3|A4HSE3_LEIIN Nucleolar RNA helicase II, putative (Frag...    36   2.3  
tr|A4H460|A4H460_LEIBR Nucleolar RNA helicase II, putative OS=Le...    36   2.3  
tr|B2RDL0|B2RDL0_HUMAN cDNA, FLJ96663, Homo sapiens DEAD (Asp-Gl...    35   3.0  
tr|B3RVR9|B3RVR9_TRIAD Putative uncharacterized protein OS=Trich...    35   3.9  
tr|Q8BRU5|Q8BRU5_MOUSE Putative uncharacterized protein OS=Mus m...    34   8.7  
tr|Q5BKP5|Q5BKP5_MOUSE DEAD (Asp-Glu-Ala-Asp) box polypeptide 50...    34   8.7  

>tr|A7QGV9|A7QGV9_VITVI Chromosome chr16 scaffold_94, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00038510001
           PE=3 SV=1
          Length = 600

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 28/35 (80%), Positives = 32/35 (91%)
 Frame = +3

Query: 537 NPYAVSNFRISEALRRKLKTKGIEALFPIQALTFN 641
           NP A+SNFRISE LR KLK+KGIEALFPIQA+TF+
Sbjct: 11  NPNALSNFRISEPLREKLKSKGIEALFPIQAMTFD 45


>tr|A3C0Q9|A3C0Q9_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_028881 PE=3 SV=1
          Length = 685

 Score = 53.9 bits (128), Expect = 8e-06
 Identities = 25/35 (71%), Positives = 32/35 (91%)
 Frame = +3

Query: 537 NPYAVSNFRISEALRRKLKTKGIEALFPIQALTFN 641
           +P A++NFRISE+LR KLK+KGI+ALFPIQA TF+
Sbjct: 102 DPNALANFRISESLREKLKSKGIKALFPIQATTFD 136


>tr|A6MCY9|A6MCY9_9ORYZ DEAD/DEAH box helicase family protein
           OS=Oryza brachyantha PE=3 SV=1
          Length = 688

 Score = 53.1 bits (126), Expect = 1e-05
 Identities = 25/35 (71%), Positives = 31/35 (88%)
 Frame = +3

Query: 537 NPYAVSNFRISEALRRKLKTKGIEALFPIQALTFN 641
           +P A++NFRISE LR KLK+KGI+ALFPIQA TF+
Sbjct: 104 DPNALANFRISEPLREKLKSKGIKALFPIQATTFD 138


>tr|A2Z376|A2Z376_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_32075 PE=3 SV=1
          Length = 685

 Score = 53.1 bits (126), Expect = 1e-05
 Identities = 25/35 (71%), Positives = 31/35 (88%)
 Frame = +3

Query: 537 NPYAVSNFRISEALRRKLKTKGIEALFPIQALTFN 641
           +P A++NFRISE LR KLK+KGI+ALFPIQA TF+
Sbjct: 102 DPNALANFRISEPLREKLKSKGIKALFPIQATTFD 136


>tr|A9SDC8|A9SDC8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_127777 PE=3 SV=1
          Length = 689

 Score = 52.4 bits (124), Expect = 2e-05
 Identities = 25/35 (71%), Positives = 29/35 (82%)
 Frame = +3

Query: 534 INPYAVSNFRISEALRRKLKTKGIEALFPIQALTF 638
           ++P AVSNF I +ALR KLK KGIE+LFPIQA TF
Sbjct: 107 VDPMAVSNFNIGKALRDKLKAKGIESLFPIQAQTF 141


>tr|Q9M6R6|Q9M6R6_PHAAU RNA helicase OS=Phaseolus aureus GN=VRH1
           PE=2 SV=1
          Length = 713

 Score = 50.8 bits (120), Expect = 7e-05
 Identities = 25/35 (71%), Positives = 29/35 (82%)
 Frame = +3

Query: 537 NPYAVSNFRISEALRRKLKTKGIEALFPIQALTFN 641
           +P AVS  RISE LR KLK KGIE+LFPIQA+TF+
Sbjct: 127 DPNAVSKLRISEPLRLKLKEKGIESLFPIQAMTFD 161


>tr|B4FF50|B4FF50_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 506

 Score = 50.1 bits (118), Expect = 1e-04
 Identities = 22/35 (62%), Positives = 32/35 (91%)
 Frame = +3

Query: 537 NPYAVSNFRISEALRRKLKTKGIEALFPIQALTFN 641
           +P A++NFRISE+LR+ L++KGI++LFPIQA TF+
Sbjct: 119 DPNALTNFRISESLRQSLRSKGIKSLFPIQATTFD 153


>tr|A4V6M8|A4V6M8_DUGJA Nucleolar RNA helicase II/Gu protein
           (Fragment) OS=Dugesia japonica PE=2 SV=1
          Length = 627

 Score = 38.1 bits (87), Expect = 0.46
 Identities = 16/31 (51%), Positives = 25/31 (80%)
 Frame = +3

Query: 549 VSNFRISEALRRKLKTKGIEALFPIQALTFN 641
           +SNF +S  L++KL+ +G++ALFPIQ  TF+
Sbjct: 46  LSNFPLSSDLQKKLQARGVKALFPIQIKTFH 76


>tr|A4RW46|A4RW46_OSTLU Predicted protein OS=Ostreococcus
           lucimarinus (strain CCE9901) GN=OSTLU_15057 PE=3 SV=1
          Length = 654

 Score = 37.4 bits (85), Expect = 0.78
 Identities = 17/33 (51%), Positives = 23/33 (69%)
 Frame = +3

Query: 537 NPYAVSNFRISEALRRKLKTKGIEALFPIQALT 635
           NP A+ NF +SE ++  L+ KG +ALF IQA T
Sbjct: 81  NPLALDNFALSEPVKATLRKKGFDALFAIQAET 113


>tr|Q9CWZ5|Q9CWZ5_MOUSE Putative uncharacterized protein OS=Mus
           musculus GN=Ddx21 PE=2 SV=2
          Length = 832

 Score = 36.6 bits (83), Expect = 1.3
 Identities = 18/32 (56%), Positives = 22/32 (68%)
 Frame = +3

Query: 546 AVSNFRISEALRRKLKTKGIEALFPIQALTFN 641
           A SNF ISE   + LK +G+  LFPIQA TF+
Sbjct: 240 AFSNFPISEETVKLLKARGVNFLFPIQAKTFH 271