DK952848
Clone id TST38A01NGRL0015_D08
Library
Length 598
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0015_D08. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence
ATCAGCTGCTTTTGTGATGACGATCCATTAGTAACAGAGCACTTTTTCAACAAGGATGGA
AGCACTCTCACTCTACGTACTAAGTTGGAAATTATGTACAGTCCGTGGGCAATGAGCATG
CTAAATGGATATCAAATTCCAGTCAGGAAGTCTTTTAAAGAATCGACTGGTGGGCCGACA
GGTGGTGGTAGAGGAGGAGATGGTGATGGTGGTGGAGATGGTGGAGGTGGTGGGGGAGAT
GAGGGGAAGGAAGAGCAAGTATGGGTGCTTCCATTTCTCACCATTGCTTTTGCTGCATTT
CATTTGGGTTATTGCATTGCAATATGGATGAAAGATGAGTCGTTTGATTTTGAGTTTTTT
CGCACTGGCATTGGACTTTTCTGCCTACTAGCCTTGGCGGCAATTCGTTTGAACAACCGA
ACAGGAATGGATGCCTACCTTCTGGGTTTGGGAGCATCTGTTGGGGTGATGCTTTGGACA
GGTGAACGGTGCTTGGTGAAAAAAGAAGGCAGTCCAGCTGGAATAGTTTCATTCTTTGCT
GCTGCAATGGCTGCTCTGTTTTCTACTGCAATTCATGAGACAATACGTCGGCGCTTCT
■■Homology search results ■■ -
sp_hit_id Q60952
Definition sp|Q60952|CP250_MOUSE Centrosome-associated protein CEP250 OS=Mus musculus
Align length 93
Score (bit) 31.2
E-value 4.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK952848|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0015_D08, 5'
(598 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q60952|CP250_MOUSE Centrosome-associated protein CEP250 OS=Mu... 31 4.2
sp|Q2I689|PLAL1_PIG Zinc finger protein PLAGL1 OS=Sus scrofa GN=... 30 7.1
sp|Q9UM63|PLAL1_HUMAN Zinc finger protein PLAGL1 OS=Homo sapiens... 30 7.1
sp|A0JNN6|CI169_BOVIN UPF0574 protein C9orf169 homolog OS=Bos ta... 30 9.2
sp|P05990|PYR1_DROME CAD protein OS=Drosophila melanogaster GN=r... 30 9.3

>sp|Q60952|CP250_MOUSE Centrosome-associated protein CEP250 OS=Mus
musculus GN=Cep250 PE=1 SV=3
Length = 2414

Score = 31.2 bits (69), Expect = 4.2
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 5/93 (5%)
Frame = -1

Query: 547 LQQQRMKLFQLDCLLFSPSTVHLSKASPQQMLPNPEGRHPFLFGCSNELPPRLVGRKVQC 368
+Q + +L L+CL H S Q+M+ EG+ L L R +
Sbjct: 1537 IQDLKKQLGTLECLALELEESHHKVESQQKMITELEGQREMQRVALTHLTLDLEERSQEL 1596

Query: 367 QCEKTQ-----NQTTHLSSILQCNNPNEMQQKQ 284
Q + +Q N +THL+ LQ + Q+Q
Sbjct: 1597 QAQSSQLHELENHSTHLAKELQERDQEVTSQRQ 1629


>sp|Q2I689|PLAL1_PIG Zinc finger protein PLAGL1 OS=Sus scrofa
GN=PLAGL1 PE=2 SV=1
Length = 463

Score = 30.4 bits (67), Expect = 7.1
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = -1

Query: 373 QC-QCEKTQNQTTHLSSILQCNNPNEM 296
QC CEKT N+ HL + LQ ++PN+M
Sbjct: 63 QCAHCEKTFNRKDHLKNHLQTHDPNKM 89


>sp|Q9UM63|PLAL1_HUMAN Zinc finger protein PLAGL1 OS=Homo sapiens
GN=PLAGL1 PE=2 SV=2
Length = 463

Score = 30.4 bits (67), Expect = 7.1
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = -1

Query: 373 QC-QCEKTQNQTTHLSSILQCNNPNEM 296
QC CEKT N+ HL + LQ ++PN+M
Sbjct: 63 QCAHCEKTFNRKDHLKNHLQTHDPNKM 89


>sp|A0JNN6|CI169_BOVIN UPF0574 protein C9orf169 homolog OS=Bos
taurus PE=2 SV=1
Length = 126

Score = 30.0 bits (66), Expect = 9.2
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +3

Query: 243 GEGRASMGASISHHCFCCISFGLLHC 320
G A G I+HHC+CC HC
Sbjct: 87 GPPPAQRGDDIAHHCWCCPCCSCCHC 112


>sp|P05990|PYR1_DROME CAD protein OS=Drosophila melanogaster GN=r
PE=1 SV=3
Length = 2224

Score = 30.0 bits (66), Expect = 9.3
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -1

Query: 541 QQRMKLFQLDCLLFSPSTVHLSKASPQQMLPNPEGRHPFLFGCSNEL 401
Q+ +++ D L F P V L+K + L P R PF+ + +L
Sbjct: 788 QKALRMVDSDVLGFDPDVVPLNKEQLAEQLSEPTDRRPFVIAAALQL 834


tr_hit_id A9U3Z5
Definition tr|A9U3Z5|A9U3Z5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 177
Score (bit) 187.0
E-value 5.0e-46
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK952848|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0015_D08, 5'
(598 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9U3Z5|A9U3Z5_PHYPA Predicted protein OS=Physcomitrella paten... 187 5e-46
tr|A9SVG7|A9SVG7_PHYPA Predicted protein OS=Physcomitrella paten... 177 3e-43
tr|A9NX68|A9NX68_PICSI Putative uncharacterized protein OS=Picea... 165 2e-39
tr|A9SQY4|A9SQY4_PHYPA Predicted protein OS=Physcomitrella paten... 157 4e-37
tr|B4J0F8|B4J0F8_DROGR GH16462 OS=Drosophila grimshawi GN=GH1646... 37 1.1
tr|Q12PX1|Q12PX1_SHEDO Glutamate--cysteine ligase OS=Shewanella ... 34 5.6
tr|Q1ECU7|Q1ECU7_DANRE Junctophilin 1b OS=Danio rerio GN=jph1b P... 34 7.3
tr|B7D0H4|B7D0H4_BURPS Transcriptional regulator, AraC family OS... 33 9.5
tr|B4LBF0|B4LBF0_DROVI GJ13412 OS=Drosophila virilis GN=GJ13412 ... 33 9.6

>tr|A9U3Z5|A9U3Z5_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_173543 PE=4 SV=1
Length = 262

Score = 187 bits (474), Expect = 5e-46
Identities = 99/177 (55%), Positives = 115/177 (64%)
Frame = +1

Query: 1 ISCFCDDDPLVTEHFFNKDGSTLTLRTKLEIMYSPWAMSMLNGYQIPVRKSFKESTXXXX 180
I CF DDD E +D S L+ RT E+ YSPWAM MLNGY + FKEST
Sbjct: 71 IVCFRDDD--APELPVGRDLSDLSARTSFEVRYSPWAMQMLNGYGKKDKNDFKESTGGPP 128

Query: 181 XXXXXXXXXXXXXXXXXXXXXXKEEQVWVLPFLTIAFAAFHLGYCIAIWMKDESFDFEFF 360
EE +++LP LT+AFAAFHLGYCIAIW+KDES DFEFF
Sbjct: 129 GNGKGGDDGGGDGGGDGSDDDG-EEHIFLLPILTLAFAAFHLGYCIAIWVKDESLDFEFF 187

Query: 361 RTGIGLFCXXXXXXIRLNNRTGMDAYLLGLGASVGVMLWTGERCLVKKEGSPAGIVS 531
RTG+GLF +RLN RTG+DAY+LGLGASVGVM+WTGERCLVK+EG PAGIV+
Sbjct: 188 RTGLGLFGLLALAAVRLNARTGIDAYILGLGASVGVMVWTGERCLVKREGHPAGIVA 244


>tr|A9SVG7|A9SVG7_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_84520 PE=4 SV=1
Length = 258

Score = 177 bits (450), Expect = 3e-43
Identities = 88/177 (49%), Positives = 114/177 (64%)
Frame = +1

Query: 1 ISCFCDDDPLVTEHFFNKDGSTLTLRTKLEIMYSPWAMSMLNGYQIPVRKSFKESTXXXX 180
+ CF DDD + E+ ++ S + +RT LEI YSPWA+ M+NG+ KEST
Sbjct: 66 VVCFRDDDAPLPEYLVERNWSDMNVRTNLEIRYSPWAVEMMNGFGNKNEAKTKESTGGPP 125

Query: 181 XXXXXXXXXXXXXXXXXXXXXXKEEQVWVLPFLTIAFAAFHLGYCIAIWMKDESFDFEFF 360
+ V++LP LT+AFAAFHLGYCIA+W+KD++ DFEF
Sbjct: 126 GNGNGGDDGGNGGGGGGDDDG--DYHVFLLPMLTLAFAAFHLGYCIAVWVKDDNLDFEFL 183

Query: 361 RTGIGLFCXXXXXXIRLNNRTGMDAYLLGLGASVGVMLWTGERCLVKKEGSPAGIVS 531
RTG+GLF RLN RTG+DAY+LGLGAS+GVM+WTGERCLVKKEG+PAG+V+
Sbjct: 184 RTGLGLFGLLAVSAFRLNTRTGIDAYILGLGASLGVMVWTGERCLVKKEGNPAGVVA 240


>tr|A9NX68|A9NX68_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 264

Score = 165 bits (417), Expect = 2e-39
Identities = 85/177 (48%), Positives = 109/177 (61%)
Frame = +1

Query: 1 ISCFCDDDPLVTEHFFNKDGSTLTLRTKLEIMYSPWAMSMLNGYQIPVRKSFKESTXXXX 180
+ CF DDD ++ +L+LR EI YSPWA SMLNG +R+S
Sbjct: 71 VVCFRDDDCPFPGSPLEREAGSLSLRPSSEIRYSPWAASMLNGLGENIRES-TGGPAGGG 129

Query: 181 XXXXXXXXXXXXXXXXXXXXXXKEEQVWVLPFLTIAFAAFHLGYCIAIWMKDESFDFEFF 360
+EE +++LP LT+AFAAF+LGYCIA+W+KD++ D +F
Sbjct: 130 KGSDGDDDGNGGGGGGDDESDGEEEHLFLLPLLTLAFAAFNLGYCIAVWVKDDNMDNDFL 189

Query: 361 RTGIGLFCXXXXXXIRLNNRTGMDAYLLGLGASVGVMLWTGERCLVKKEGSPAGIVS 531
RTG GLFC IRLNNRTG+DAY+LGLGASVGVM+W GERC VK+E +PAGIV+
Sbjct: 190 RTGCGLFCLLVLAAIRLNNRTGIDAYILGLGASVGVMVWAGERCFVKRESNPAGIVA 246


>tr|A9SQY4|A9SQY4_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_230440 PE=4 SV=1
Length = 249

Score = 157 bits (397), Expect = 4e-37
Identities = 78/177 (44%), Positives = 112/177 (63%)
Frame = +1

Query: 1 ISCFCDDDPLVTEHFFNKDGSTLTLRTKLEIMYSPWAMSMLNGYQIPVRKSFKESTXXXX 180
+ CF +DD E+ ++ S +++RT LEI YSPWA+ M+NG+ ++ KEST
Sbjct: 58 VVCFREDDAPFPEYLVERNWSDMSVRTNLEIQYSPWAIQMMNGFAEEAKQ--KESTGGPP 115

Query: 181 XXXXXXXXXXXXXXXXXXXXXXKEEQVWVLPFLTIAFAAFHLGYCIAIWMKDESFDFEFF 360
++ +++LP LT+AFAAFHLGYCIAIW+KD+ + EF
Sbjct: 116 GNGKGGDDGDGHGGGGGGDDDA-DDHIFLLPMLTLAFAAFHLGYCIAIWVKDDGLNLEFI 174

Query: 361 RTGIGLFCXXXXXXIRLNNRTGMDAYLLGLGASVGVMLWTGERCLVKKEGSPAGIVS 531
RTG+GLF +RLN TG DA++LG+ +S+GVM+WTGERCL+K+EGS AG+V+
Sbjct: 175 RTGLGLFFLLAVSALRLNVETGKDAHVLGIVSSLGVMVWTGERCLIKREGSLAGVVA 231


>tr|B4J0F8|B4J0F8_DROGR GH16462 OS=Drosophila grimshawi GN=GH16462
PE=4 SV=1
Length = 1250

Score = 36.6 bits (83), Expect = 1.1
Identities = 19/67 (28%), Positives = 31/67 (46%)
Frame = -1

Query: 484 HLSKASPQQMLPNPEGRHPFLFGCSNELPPRLVGRKVQCQCEKTQNQTTHLSSILQCNNP 305
H +A P ++ +P G P L +N+LPP +Q Q ++ Q Q + Q +
Sbjct: 1132 HSHQAPPGHLMHSPHGGPPMLLTTANQLPPPTTPHHMQQQQQQQQQQQQQQQPLPQVSPG 1191

Query: 304 NEMQQKQ 284
+ QQ Q
Sbjct: 1192 RQQQQPQ 1198


>tr|Q12PX1|Q12PX1_SHEDO Glutamate--cysteine ligase OS=Shewanella
denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)
GN=Sden_1219 PE=3 SV=1
Length = 524

Score = 34.3 bits (77), Expect = 5.6
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +1

Query: 259 VWVLPFLTIAFAAFHLGYCIAIWMKDESFDFEFFRTGIGLFCXXXXXXIRLNN 417
VWVLP+L + A + ++KD+ FDFEF +TG G +R+++
Sbjct: 192 VWVLPYLFGSSPAI-----CSSFIKDQEFDFEFMKTGKGTLYLPYATSLRMSD 239


>tr|Q1ECU7|Q1ECU7_DANRE Junctophilin 1b OS=Danio rerio GN=jph1b PE=2
SV=1
Length = 673

Score = 33.9 bits (76), Expect = 7.3
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = -3

Query: 536 KNETIPAGLPSFFTKHRSPVQSITPTDAPKPRR*ASIPVR----LFKRIAAKASRQKSPM 369
K E P+G P F+ K +P QS P+ +P P S P+ F R A KA ++ P
Sbjct: 443 KKEKSPSGSPHFYRKGTTPTQS--PSQSPGPTPPPSPPLTKKKPFFNRSAPKAIKENKP- 499

Query: 368 PVRKN 354
P +N
Sbjct: 500 PAAEN 504


>tr|B7D0H4|B7D0H4_BURPS Transcriptional regulator, AraC family
OS=Burkholderia pseudomallei 576 GN=BUC_4083 PE=4 SV=1
Length = 118

Score = 33.5 bits (75), Expect = 9.5
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -3

Query: 521 PAGLPSFFTKHRSP--VQSITPTDAPKPRR*ASIPVRLFKRIAAKASRQKS 375
P G P+ +TK RSP VQ TPT PR R K+ AA+ +R S
Sbjct: 68 PPGEPAAYTKRRSPRFVQRATPTPQASPRAAHPARPRPEKKAAARLNRSSS 118


>tr|B4LBF0|B4LBF0_DROVI GJ13412 OS=Drosophila virilis GN=GJ13412 PE=4
SV=1
Length = 1239

Score = 33.5 bits (75), Expect = 9.6
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = -1

Query: 478 SKASPQQMLPNPEGRHPFLFGCSNELPPRLVGRKVQCQCEKTQNQTTHLSSILQCNNPNE 299
S A P ++ +P G P L +N+LPP +Q Q ++ Q Q + P
Sbjct: 1115 SNAPPGHLMHSPHGGPPMLLTTANQLPPPTTPHHMQQQQQQQQQQQQPPQASPGRQPPTH 1174

Query: 298 MQQKQ 284
QQ+Q
Sbjct: 1175 QQQQQ 1179