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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK952848
Clone id TST38A01NGRL0015_D08
Library
Length 598
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0015_D08. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
ATCAGCTGCTTTTGTGATGACGATCCATTAGTAACAGAGCACTTTTTCAACAAGGATGGA
AGCACTCTCACTCTACGTACTAAGTTGGAAATTATGTACAGTCCGTGGGCAATGAGCATG
CTAAATGGATATCAAATTCCAGTCAGGAAGTCTTTTAAAGAATCGACTGGTGGGCCGACA
GGTGGTGGTAGAGGAGGAGATGGTGATGGTGGTGGAGATGGTGGAGGTGGTGGGGGAGAT
GAGGGGAAGGAAGAGCAAGTATGGGTGCTTCCATTTCTCACCATTGCTTTTGCTGCATTT
CATTTGGGTTATTGCATTGCAATATGGATGAAAGATGAGTCGTTTGATTTTGAGTTTTTT
CGCACTGGCATTGGACTTTTCTGCCTACTAGCCTTGGCGGCAATTCGTTTGAACAACCGA
ACAGGAATGGATGCCTACCTTCTGGGTTTGGGAGCATCTGTTGGGGTGATGCTTTGGACA
GGTGAACGGTGCTTGGTGAAAAAAGAAGGCAGTCCAGCTGGAATAGTTTCATTCTTTGCT
GCTGCAATGGCTGCTCTGTTTTCTACTGCAATTCATGAGACAATACGTCGGCGCTTCT
■■Homology search results ■■ -
sp_hit_id Q60952
Definition sp|Q60952|CP250_MOUSE Centrosome-associated protein CEP250 OS=Mus musculus
Align length 93
Score (bit) 31.2
E-value 4.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952848|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0015_D08, 5'
         (598 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q60952|CP250_MOUSE Centrosome-associated protein CEP250 OS=Mu...    31   4.2  
sp|Q2I689|PLAL1_PIG Zinc finger protein PLAGL1 OS=Sus scrofa GN=...    30   7.1  
sp|Q9UM63|PLAL1_HUMAN Zinc finger protein PLAGL1 OS=Homo sapiens...    30   7.1  
sp|A0JNN6|CI169_BOVIN UPF0574 protein C9orf169 homolog OS=Bos ta...    30   9.2  
sp|P05990|PYR1_DROME CAD protein OS=Drosophila melanogaster GN=r...    30   9.3  

>sp|Q60952|CP250_MOUSE Centrosome-associated protein CEP250 OS=Mus
            musculus GN=Cep250 PE=1 SV=3
          Length = 2414

 Score = 31.2 bits (69), Expect = 4.2
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 5/93 (5%)
 Frame = -1

Query: 547  LQQQRMKLFQLDCLLFSPSTVHLSKASPQQMLPNPEGRHPFLFGCSNELPPRLVGRKVQC 368
            +Q  + +L  L+CL       H    S Q+M+   EG+          L   L  R  + 
Sbjct: 1537 IQDLKKQLGTLECLALELEESHHKVESQQKMITELEGQREMQRVALTHLTLDLEERSQEL 1596

Query: 367  QCEKTQ-----NQTTHLSSILQCNNPNEMQQKQ 284
            Q + +Q     N +THL+  LQ  +     Q+Q
Sbjct: 1597 QAQSSQLHELENHSTHLAKELQERDQEVTSQRQ 1629


>sp|Q2I689|PLAL1_PIG Zinc finger protein PLAGL1 OS=Sus scrofa
           GN=PLAGL1 PE=2 SV=1
          Length = 463

 Score = 30.4 bits (67), Expect = 7.1
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -1

Query: 373 QC-QCEKTQNQTTHLSSILQCNNPNEM 296
           QC  CEKT N+  HL + LQ ++PN+M
Sbjct: 63  QCAHCEKTFNRKDHLKNHLQTHDPNKM 89


>sp|Q9UM63|PLAL1_HUMAN Zinc finger protein PLAGL1 OS=Homo sapiens
           GN=PLAGL1 PE=2 SV=2
          Length = 463

 Score = 30.4 bits (67), Expect = 7.1
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -1

Query: 373 QC-QCEKTQNQTTHLSSILQCNNPNEM 296
           QC  CEKT N+  HL + LQ ++PN+M
Sbjct: 63  QCAHCEKTFNRKDHLKNHLQTHDPNKM 89


>sp|A0JNN6|CI169_BOVIN UPF0574 protein C9orf169 homolog OS=Bos
           taurus PE=2 SV=1
          Length = 126

 Score = 30.0 bits (66), Expect = 9.2
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 243 GEGRASMGASISHHCFCCISFGLLHC 320
           G   A  G  I+HHC+CC      HC
Sbjct: 87  GPPPAQRGDDIAHHCWCCPCCSCCHC 112


>sp|P05990|PYR1_DROME CAD protein OS=Drosophila melanogaster GN=r
           PE=1 SV=3
          Length = 2224

 Score = 30.0 bits (66), Expect = 9.3
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -1

Query: 541 QQRMKLFQLDCLLFSPSTVHLSKASPQQMLPNPEGRHPFLFGCSNEL 401
           Q+ +++   D L F P  V L+K    + L  P  R PF+   + +L
Sbjct: 788 QKALRMVDSDVLGFDPDVVPLNKEQLAEQLSEPTDRRPFVIAAALQL 834
tr_hit_id A9U3Z5
Definition tr|A9U3Z5|A9U3Z5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 177
Score (bit) 187.0
E-value 5.0e-46
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952848|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0015_D08, 5'
         (598 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9U3Z5|A9U3Z5_PHYPA Predicted protein OS=Physcomitrella paten...   187   5e-46
tr|A9SVG7|A9SVG7_PHYPA Predicted protein OS=Physcomitrella paten...   177   3e-43
tr|A9NX68|A9NX68_PICSI Putative uncharacterized protein OS=Picea...   165   2e-39
tr|A9SQY4|A9SQY4_PHYPA Predicted protein OS=Physcomitrella paten...   157   4e-37
tr|B4J0F8|B4J0F8_DROGR GH16462 OS=Drosophila grimshawi GN=GH1646...    37   1.1  
tr|Q12PX1|Q12PX1_SHEDO Glutamate--cysteine ligase OS=Shewanella ...    34   5.6  
tr|Q1ECU7|Q1ECU7_DANRE Junctophilin 1b OS=Danio rerio GN=jph1b P...    34   7.3  
tr|B7D0H4|B7D0H4_BURPS Transcriptional regulator, AraC family OS...    33   9.5  
tr|B4LBF0|B4LBF0_DROVI GJ13412 OS=Drosophila virilis GN=GJ13412 ...    33   9.6  

>tr|A9U3Z5|A9U3Z5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_173543 PE=4 SV=1
          Length = 262

 Score =  187 bits (474), Expect = 5e-46
 Identities = 99/177 (55%), Positives = 115/177 (64%)
 Frame = +1

Query: 1   ISCFCDDDPLVTEHFFNKDGSTLTLRTKLEIMYSPWAMSMLNGYQIPVRKSFKESTXXXX 180
           I CF DDD    E    +D S L+ RT  E+ YSPWAM MLNGY    +  FKEST    
Sbjct: 71  IVCFRDDD--APELPVGRDLSDLSARTSFEVRYSPWAMQMLNGYGKKDKNDFKESTGGPP 128

Query: 181 XXXXXXXXXXXXXXXXXXXXXXKEEQVWVLPFLTIAFAAFHLGYCIAIWMKDESFDFEFF 360
                                  EE +++LP LT+AFAAFHLGYCIAIW+KDES DFEFF
Sbjct: 129 GNGKGGDDGGGDGGGDGSDDDG-EEHIFLLPILTLAFAAFHLGYCIAIWVKDESLDFEFF 187

Query: 361 RTGIGLFCXXXXXXIRLNNRTGMDAYLLGLGASVGVMLWTGERCLVKKEGSPAGIVS 531
           RTG+GLF       +RLN RTG+DAY+LGLGASVGVM+WTGERCLVK+EG PAGIV+
Sbjct: 188 RTGLGLFGLLALAAVRLNARTGIDAYILGLGASVGVMVWTGERCLVKREGHPAGIVA 244


>tr|A9SVG7|A9SVG7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_84520 PE=4 SV=1
          Length = 258

 Score =  177 bits (450), Expect = 3e-43
 Identities = 88/177 (49%), Positives = 114/177 (64%)
 Frame = +1

Query: 1   ISCFCDDDPLVTEHFFNKDGSTLTLRTKLEIMYSPWAMSMLNGYQIPVRKSFKESTXXXX 180
           + CF DDD  + E+   ++ S + +RT LEI YSPWA+ M+NG+        KEST    
Sbjct: 66  VVCFRDDDAPLPEYLVERNWSDMNVRTNLEIRYSPWAVEMMNGFGNKNEAKTKESTGGPP 125

Query: 181 XXXXXXXXXXXXXXXXXXXXXXKEEQVWVLPFLTIAFAAFHLGYCIAIWMKDESFDFEFF 360
                                  +  V++LP LT+AFAAFHLGYCIA+W+KD++ DFEF 
Sbjct: 126 GNGNGGDDGGNGGGGGGDDDG--DYHVFLLPMLTLAFAAFHLGYCIAVWVKDDNLDFEFL 183

Query: 361 RTGIGLFCXXXXXXIRLNNRTGMDAYLLGLGASVGVMLWTGERCLVKKEGSPAGIVS 531
           RTG+GLF        RLN RTG+DAY+LGLGAS+GVM+WTGERCLVKKEG+PAG+V+
Sbjct: 184 RTGLGLFGLLAVSAFRLNTRTGIDAYILGLGASLGVMVWTGERCLVKKEGNPAGVVA 240


>tr|A9NX68|A9NX68_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 264

 Score =  165 bits (417), Expect = 2e-39
 Identities = 85/177 (48%), Positives = 109/177 (61%)
 Frame = +1

Query: 1   ISCFCDDDPLVTEHFFNKDGSTLTLRTKLEIMYSPWAMSMLNGYQIPVRKSFKESTXXXX 180
           + CF DDD         ++  +L+LR   EI YSPWA SMLNG    +R+S         
Sbjct: 71  VVCFRDDDCPFPGSPLEREAGSLSLRPSSEIRYSPWAASMLNGLGENIRES-TGGPAGGG 129

Query: 181 XXXXXXXXXXXXXXXXXXXXXXKEEQVWVLPFLTIAFAAFHLGYCIAIWMKDESFDFEFF 360
                                 +EE +++LP LT+AFAAF+LGYCIA+W+KD++ D +F 
Sbjct: 130 KGSDGDDDGNGGGGGGDDESDGEEEHLFLLPLLTLAFAAFNLGYCIAVWVKDDNMDNDFL 189

Query: 361 RTGIGLFCXXXXXXIRLNNRTGMDAYLLGLGASVGVMLWTGERCLVKKEGSPAGIVS 531
           RTG GLFC      IRLNNRTG+DAY+LGLGASVGVM+W GERC VK+E +PAGIV+
Sbjct: 190 RTGCGLFCLLVLAAIRLNNRTGIDAYILGLGASVGVMVWAGERCFVKRESNPAGIVA 246


>tr|A9SQY4|A9SQY4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_230440 PE=4 SV=1
          Length = 249

 Score =  157 bits (397), Expect = 4e-37
 Identities = 78/177 (44%), Positives = 112/177 (63%)
 Frame = +1

Query: 1   ISCFCDDDPLVTEHFFNKDGSTLTLRTKLEIMYSPWAMSMLNGYQIPVRKSFKESTXXXX 180
           + CF +DD    E+   ++ S +++RT LEI YSPWA+ M+NG+    ++  KEST    
Sbjct: 58  VVCFREDDAPFPEYLVERNWSDMSVRTNLEIQYSPWAIQMMNGFAEEAKQ--KESTGGPP 115

Query: 181 XXXXXXXXXXXXXXXXXXXXXXKEEQVWVLPFLTIAFAAFHLGYCIAIWMKDESFDFEFF 360
                                  ++ +++LP LT+AFAAFHLGYCIAIW+KD+  + EF 
Sbjct: 116 GNGKGGDDGDGHGGGGGGDDDA-DDHIFLLPMLTLAFAAFHLGYCIAIWVKDDGLNLEFI 174

Query: 361 RTGIGLFCXXXXXXIRLNNRTGMDAYLLGLGASVGVMLWTGERCLVKKEGSPAGIVS 531
           RTG+GLF       +RLN  TG DA++LG+ +S+GVM+WTGERCL+K+EGS AG+V+
Sbjct: 175 RTGLGLFFLLAVSALRLNVETGKDAHVLGIVSSLGVMVWTGERCLIKREGSLAGVVA 231


>tr|B4J0F8|B4J0F8_DROGR GH16462 OS=Drosophila grimshawi GN=GH16462
            PE=4 SV=1
          Length = 1250

 Score = 36.6 bits (83), Expect = 1.1
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = -1

Query: 484  HLSKASPQQMLPNPEGRHPFLFGCSNELPPRLVGRKVQCQCEKTQNQTTHLSSILQCNNP 305
            H  +A P  ++ +P G  P L   +N+LPP      +Q Q ++ Q Q      + Q +  
Sbjct: 1132 HSHQAPPGHLMHSPHGGPPMLLTTANQLPPPTTPHHMQQQQQQQQQQQQQQQPLPQVSPG 1191

Query: 304  NEMQQKQ 284
             + QQ Q
Sbjct: 1192 RQQQQPQ 1198


>tr|Q12PX1|Q12PX1_SHEDO Glutamate--cysteine ligase OS=Shewanella
           denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)
           GN=Sden_1219 PE=3 SV=1
          Length = 524

 Score = 34.3 bits (77), Expect = 5.6
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = +1

Query: 259 VWVLPFLTIAFAAFHLGYCIAIWMKDESFDFEFFRTGIGLFCXXXXXXIRLNN 417
           VWVLP+L  +  A       + ++KD+ FDFEF +TG G         +R+++
Sbjct: 192 VWVLPYLFGSSPAI-----CSSFIKDQEFDFEFMKTGKGTLYLPYATSLRMSD 239


>tr|Q1ECU7|Q1ECU7_DANRE Junctophilin 1b OS=Danio rerio GN=jph1b PE=2
           SV=1
          Length = 673

 Score = 33.9 bits (76), Expect = 7.3
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
 Frame = -3

Query: 536 KNETIPAGLPSFFTKHRSPVQSITPTDAPKPRR*ASIPVR----LFKRIAAKASRQKSPM 369
           K E  P+G P F+ K  +P QS  P+ +P P    S P+      F R A KA ++  P 
Sbjct: 443 KKEKSPSGSPHFYRKGTTPTQS--PSQSPGPTPPPSPPLTKKKPFFNRSAPKAIKENKP- 499

Query: 368 PVRKN 354
           P  +N
Sbjct: 500 PAAEN 504


>tr|B7D0H4|B7D0H4_BURPS Transcriptional regulator, AraC family
           OS=Burkholderia pseudomallei 576 GN=BUC_4083 PE=4 SV=1
          Length = 118

 Score = 33.5 bits (75), Expect = 9.5
 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -3

Query: 521 PAGLPSFFTKHRSP--VQSITPTDAPKPRR*ASIPVRLFKRIAAKASRQKS 375
           P G P+ +TK RSP  VQ  TPT    PR       R  K+ AA+ +R  S
Sbjct: 68  PPGEPAAYTKRRSPRFVQRATPTPQASPRAAHPARPRPEKKAAARLNRSSS 118


>tr|B4LBF0|B4LBF0_DROVI GJ13412 OS=Drosophila virilis GN=GJ13412 PE=4
            SV=1
          Length = 1239

 Score = 33.5 bits (75), Expect = 9.6
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = -1

Query: 478  SKASPQQMLPNPEGRHPFLFGCSNELPPRLVGRKVQCQCEKTQNQTTHLSSILQCNNPNE 299
            S A P  ++ +P G  P L   +N+LPP      +Q Q ++ Q Q     +      P  
Sbjct: 1115 SNAPPGHLMHSPHGGPPMLLTTANQLPPPTTPHHMQQQQQQQQQQQQPPQASPGRQPPTH 1174

Query: 298  MQQKQ 284
             QQ+Q
Sbjct: 1175 QQQQQ 1179