DK952858 |
Clone id |
TST38A01NGRL0015_D18 |
Library |
TST38 |
Length |
495 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0015_D18. 5' end sequence. |
Accession |
DK952858 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL122Contig1 |
Sequence |
ATGAACCCTCGTAAGAATCTGTGGAAACAAACCGGTGCAGAAAACTATTCCTACTTCCTC ATCTCCAACTCACGGAAGTGCCAATTGATTAATTGCTTGGATAAGTGGGCTTGCCAAACA ATAAGTTTGGGGTTTTCTCTGTTGACTATTGGTATACTTTCTGGCGCAGTGTGGGCTAAT GAAGCTCGGGGATCTTACTGGAGTTGGGACCCAAAAGAGACTTGGGCGTTGGTAACTCGG TTAGTATATGCTACTTACCTTCATACAAAGGTGGATAAGAGAAAGATGGGGGAGGGACCG GCCACGACAGCATCTATGGGATTTTTCTTAGTTTGGATTTGTTTCTTGGGAGTCAATTTA TTAGGAGTTGGATTGCATAATTACGGATGGTTAGCGTAAAGACCAGAAGGTTAATTTTGG CAAATTGAAGGAAAATAAAAAGGAAGGGGGAGATTAAAAAAAAAAAGTGGTTTGAAAAAA AAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q85FH6 |
Definition |
sp|Q85FH6|CCSA_ADICA Cytochrome c biogenesis protein ccsA OS=Adiantum capillus-veneris |
Align length |
132 |
Score (bit) |
239.0 |
E-value |
4.0e-63 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A2T382 |
Definition |
tr|A2T382|A2T382_ANGEV Cytochrome c heme attachment protein OS=Angiopteris evecta |
Align length |
122 |
Score (bit) |
147.0 |
E-value |
3.0e-34 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK952858|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0015_D18, 5' (455 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A2T382|A2T382_ANGEV Cytochrome c heme attachment protein OS=A... 147 3e-34 tr|A9QB63|A9QB63_9SPER Cytochrome c heme attachment protein (Fra... 139 7e-32 tr|B7ZIL9|B7ZIL9_KETDA Cytochrome c biogenesis protein OS=Ketele... 135 8e-31 tr|A4QME1|A4QME1_PINKO Cytochrome biogenesis protein C OS=Pinus ... 131 1e-29 tr|B7T331|B7T331_9ROSI Cytochrome c heme attachment protein OS=G... 131 2e-29 tr|Q4FGG3|Q4FGG3_GINBI Cytochrome c biogenesis protein (Fragment... 130 3e-29 tr|A9QAY6|A9QAY6_9APIA Cytochrome c heme attachment protein (Fra... 130 4e-29 tr|B7ZIK3|B7ZIK3_EPHEU Cytochrome c biogenesis protein OS=Ephedr... 129 6e-29 tr|B1VKJ8|B1VKJ8_CRYJA Cytochrome c heme attachment protein OS=C... 129 6e-29 tr|Q2PQH3|Q2PQH3_FUCVE Cytochrome c biogenesis protein OS=Fucus ... 129 1e-28 tr|B7T3A1|B7T3A1_9ROSI Cytochrome c heme attachment protein OS=G... 128 2e-28 tr|A9QBV2|A9QBV2_PASBI Cytochrome c heme attachment protein (Fra... 127 2e-28 tr|A9QBD9|A9QBD9_ELAOL Cytochrome c heme attachment protein (Fra... 127 3e-28 tr|A6BM14|A6BM14_GNEPA Cytochrome c biogenesis protein OS=Gnetum... 127 3e-28 tr|Q4G372|Q4G372_EMIHU Cytochrome c biogenesis protein OS=Emilia... 127 4e-28 tr|B5AH44|B5AH44_9ROSI Cytochrome c heme attachment protein OS=G... 127 4e-28 tr|A2Q595|A2Q595_MEDTR Cytochrome c assembly protein OS=Medicago... 127 4e-28 tr|A0T0K9|A0T0K9_PHATR Cytochrome c biogenesis protein OS=Phaeod... 126 5e-28 tr|Q4PIZ3|Q4PIZ3_CYACA Hypothetical 35 kDa protein OS=Cyanidium ... 126 6e-28 tr|A6MVT0|A6MVT0_RHDSA Cytochrome c biogenesis protein OS=Rhodom... 125 8e-28 tr|Q8WHX9|Q8WHX9_PSINU Cytochrome c biosynthesis protein OS=Psil... 125 1e-27 tr|Q4FGG0|Q4FGG0_TYPLA Cytochrome c biogenesis protein (Fragment... 125 1e-27 tr|A7QUS1|A7QUS1_VITVI Chromosome chr1 scaffold_180, whole genom... 125 1e-27 tr|Q9MRI2|Q9MRI2_GNEGN Magnesium-chelatase subunit chlI OS=Gnetu... 124 2e-27 tr|B7T3H2|B7T3H2_9ROSI Cytochrome c heme attachment protein OS=G... 124 2e-27 tr|B8Y2U2|B8Y2U2_FESAR Cytochrome c heme attachment protein OS=F... 124 2e-27 tr|B5LMS7|B5LMS7_CICAR Hypothetical chloroplast RF52 OS=Cicer ar... 124 2e-27 tr|A9QC26|A9QC26_9ASTR Cytochrome c heme attachment protein (Fra... 124 2e-27 tr|B7T2P8|B7T2P8_9ROSI Cytochrome c heme attachment protein OS=E... 124 3e-27 tr|B2Y206|B2Y206_WELMI Cytochrome c biogenesis protein OS=Welwit... 124 3e-27
>tr|A2T382|A2T382_ANGEV Cytochrome c heme attachment protein OS=Angiopteris evecta GN=ccsA PE=4 SV=1 Length = 319
Score = 147 bits (370), Expect = 3e-34 Identities = 69/122 (56%), Positives = 84/122 (68%) Frame = +1
Query: 28 QTGAENYSYFLISNSRKCQLINCLDKWACQTISLGFSLLTIGILSGAVWANEARGSYWSW 207 ++ ++N Y L + RKCQLI LD+W+ +TI LGF LTIGILSGAVWANEA GSYWSW Sbjct: 196 ESDSKNTFYLLSRDFRKCQLIQQLDQWSYRTIGLGFPFLTIGILSGAVWANEAWGSYWSW 255
Query: 208 DPKETWALVTRLVYATYLHTKVDKRKMGEGPATTASMGFFLVWICFXXXXXXXXXXXXXX 387 DPKETWAL+T L+YA YLHT++ K G+ AT AS GFF+VWIC+ Sbjct: 256 DPKETWALITWLIYAIYLHTRMTKGWQGKQSATVASSGFFIVWICYLGVNLLGIGLHSYG 315
Query: 388 WL 393 WL Sbjct: 316 WL 317
>tr|A9QB63|A9QB63_9SPER Cytochrome c heme attachment protein (Fragment) OS=Cycas micronesica GN=ccsA PE=4 SV=1 Length = 321
Score = 139 bits (350), Expect = 7e-32 Identities = 68/132 (51%), Positives = 85/132 (64%), Gaps = 4/132 (3%) Frame = +1
Query: 10 RKNLW----KQTGAENYSYFLISNSRKCQLINCLDKWACQTISLGFSLLTIGILSGAVWA 177 R NL+ +++ +N Y +N RKCQL LD W+ + I LGF LLTIGILSGAVWA Sbjct: 189 RNNLYLHEQEKSDLQNTFYLSFTNHRKCQLTQQLDYWSYRVIGLGFLLLTIGILSGAVWA 248
Query: 178 NEARGSYWSWDPKETWALVTRLVYATYLHTKVDKRKMGEGPATTASMGFFLVWICFXXXX 357 NEA GS WSWDPKETWAL+T +++A YLHT+V+K E PA AS+G F+VWIC+ Sbjct: 249 NEAWGSRWSWDPKETWALITWIIFAIYLHTRVNKGWQDENPAIIASLGSFIVWICYLGVD 308
Query: 358 XXXXXXXXXXWL 393 WL Sbjct: 309 LLGIGLHSYGWL 320
>tr|B7ZIL9|B7ZIL9_KETDA Cytochrome c biogenesis protein OS=Keteleeria davidiana GN=ccsA PE=4 SV=1 Length = 319
Score = 135 bits (341), Expect = 8e-31 Identities = 68/133 (51%), Positives = 85/133 (63%), Gaps = 4/133 (3%) Frame = +1
Query: 7 PRKNLW---KQTGAENYS-YFLISNSRKCQLINCLDKWACQTISLGFSLLTIGILSGAVW 174 P +N + KQ Y+ YF +N RKC+LI LD W+ + I LGFSL TIG LSGA+W Sbjct: 186 PNENFYSHEKQKSDLQYTFYFSSTNYRKCKLIKQLDHWSYRAIGLGFSLSTIGTLSGAIW 245
Query: 175 ANEARGSYWSWDPKETWALVTRLVYATYLHTKVDKRKMGEGPATTASMGFFLVWICFXXX 354 ANEA GSYWSWDPKETWAL+T ++A YLHT+++K GE PA AS+GF +VWI + Sbjct: 246 ANEAWGSYWSWDPKETWALITWTIFAIYLHTRMNKGWQGEEPAIVASLGFSIVWIRYLGV 305
Query: 355 XXXXXXXXXXXWL 393 WL Sbjct: 306 DLLGIGLHSYGWL 318
>tr|A4QME1|A4QME1_PINKO Cytochrome biogenesis protein C OS=Pinus koraiensis GN=ccsA PE=4 SV=1 Length = 317
Score = 131 bits (330), Expect = 1e-29 Identities = 61/114 (53%), Positives = 76/114 (66%) Frame = +1
Query: 52 YFLISNSRKCQLINCLDKWACQTISLGFSLLTIGILSGAVWANEARGSYWSWDPKETWAL 231 YF +N RKC+LI LD W+ + I LGFSL TIG LSGA+WANEA GSYWSWDPKETWAL Sbjct: 202 YFSSTNYRKCKLIKQLDHWSYRAIGLGFSLSTIGTLSGAIWANEAWGSYWSWDPKETWAL 261
Query: 232 VTRLVYATYLHTKVDKRKMGEGPATTASMGFFLVWICFXXXXXXXXXXXXXXWL 393 +T ++A YLHT+++K GE AS+GFF++WI + WL Sbjct: 262 ITWTIFAIYLHTRMNKGWQGEELEIMASLGFFIIWIRYLGVNLLGIGLHSYGWL 315
>tr|B7T331|B7T331_9ROSI Cytochrome c heme attachment protein OS=Geranium carolinianum GN=ccsA PE=4 SV=1 Length = 319
Score = 131 bits (329), Expect = 2e-29 Identities = 65/117 (55%), Positives = 81/117 (69%), Gaps = 4/117 (3%) Frame = +1
Query: 7 PRKNLWKQTGAENY--SYFLIS--NSRKCQLINCLDKWACQTISLGFSLLTIGILSGAVW 174 P N+ T +N S FL S N + QL++ LD W+C+ ISLGF LTIGILSGAVW Sbjct: 184 PFSNIQYLTERKNILLSTFLTSSVNYYRSQLLHQLDYWSCRIISLGFLFLTIGILSGAVW 243
Query: 175 ANEARGSYWSWDPKETWALVTRLVYATYLHTKVDKRKMGEGPATTASMGFFLVWICF 345 ANEA GSYWSWDPKETWA +T V+A +LH + +KR G A ASMGFF++W+C+ Sbjct: 244 ANEAWGSYWSWDPKETWAFITWTVFAIFLHIRTNKRVEGVNSAIVASMGFFIIWVCY 300
>tr|Q4FGG3|Q4FGG3_GINBI Cytochrome c biogenesis protein (Fragment) OS=Ginkgo biloba GN=ccsA PE=4 SV=1 Length = 320
Score = 130 bits (328), Expect = 3e-29 Identities = 63/132 (47%), Positives = 82/132 (62%), Gaps = 5/132 (3%) Frame = +1
Query: 13 KNLW-----KQTGAENYSYFLISNSRKCQLINCLDKWACQTISLGFSLLTIGILSGAVWA 177 +N W K+ ++ L N R+CQL LD W+ + I LGF LLTIGIL GAVWA Sbjct: 189 RNSWYLHEQKKIDLQDTFSLLFMNYRRCQLTQQLDHWSYRAIGLGFLLLTIGILPGAVWA 248
Query: 178 NEARGSYWSWDPKETWALVTRLVYATYLHTKVDKRKMGEGPATTASMGFFLVWICFXXXX 357 NEA GSY SWDPKETW+L+T ++A YLH++++K GE PA AS+GFF++WIC+ Sbjct: 249 NEAWGSYRSWDPKETWSLITWTIFAIYLHSRMNKGWQGEKPAIAASLGFFIIWICYLGVD 308
Query: 358 XXXXXXXXXXWL 393 WL Sbjct: 309 LLGIGLHSYGWL 320
>tr|A9QAY6|A9QAY6_9APIA Cytochrome c heme attachment protein (Fragment) OS=Anethum graveolens GN=ccsA PE=4 SV=1 Length = 324
Score = 130 bits (326), Expect = 4e-29 Identities = 59/101 (58%), Positives = 74/101 (73%) Frame = +1
Query: 43 NYSYFLISNSRKCQLINCLDKWACQTISLGFSLLTIGILSGAVWANEARGSYWSWDPKET 222 N S+F +N + QLI LD W+ + ISLGF LTIGILSGAVWANEA GSYW+WDPKET Sbjct: 203 NASFFSANNYYRSQLIQQLDYWSYRVISLGFLFLTIGILSGAVWANEAWGSYWNWDPKET 262
Query: 223 WALVTRLVYATYLHTKVDKRKMGEGPATTASMGFFLVWICF 345 WA +T +V+A YLHT+ ++ E A ASMGF ++WIC+ Sbjct: 263 WAFITWIVFAVYLHTRTNRNLQVEISAIVASMGFLIIWICY 303
>tr|B7ZIK3|B7ZIK3_EPHEU Cytochrome c biogenesis protein OS=Ephedra equisetina GN=ccsA PE=4 SV=1 Length = 307
Score = 129 bits (325), Expect = 6e-29 Identities = 60/110 (54%), Positives = 79/110 (71%) Frame = +1
Query: 16 NLWKQTGAENYSYFLISNSRKCQLINCLDKWACQTISLGFSLLTIGILSGAVWANEARGS 195 N+ + ++Y FL+ N RK QLI LD+ T+ +GF LLTIGILSGAVWANEA GS Sbjct: 178 NISVEKKEKSYFPFLVENFRKLQLIQQLDQLGYYTLFIGFILLTIGILSGAVWANEAWGS 237
Query: 196 YWSWDPKETWALVTRLVYATYLHTKVDKRKMGEGPATTASMGFFLVWICF 345 YW+WDPKE WAL+T L++A Y+H +++K G+ PA AS+GF VWIC+ Sbjct: 238 YWNWDPKEIWALITWLIFAIYIHIRLNKGWKGKKPALVASIGFLFVWICY 287
>tr|B1VKJ8|B1VKJ8_CRYJA Cytochrome c heme attachment protein OS=Cryptomeria japonica GN=ccsA PE=4 SV=1 Length = 314
Score = 129 bits (325), Expect = 6e-29 Identities = 61/109 (55%), Positives = 74/109 (67%) Frame = +1
Query: 67 NSRKCQLINCLDKWACQTISLGFSLLTIGILSGAVWANEARGSYWSWDPKETWALVTRLV 246 N RK N LD+ + + I LGFSLLTIGILSGAVWANEA GSYWSWDPKETWAL+T ++ Sbjct: 205 NYRKWLFTNQLDQLSYRAIGLGFSLLTIGILSGAVWANEAWGSYWSWDPKETWALITWII 264
Query: 247 YATYLHTKVDKRKMGEGPATTASMGFFLVWICFXXXXXXXXXXXXXXWL 393 +A YLHT++++ GE PA AS+GF LVW C+ WL Sbjct: 265 FAIYLHTRINRGWKGEKPAIVASLGFILVWTCYLGVDLLGIGLHSYGWL 313
>tr|Q2PQH3|Q2PQH3_FUCVE Cytochrome c biogenesis protein OS=Fucus vesiculosus GN=ccsA PE=4 SV=1 Length = 343
Score = 129 bits (323), Expect = 1e-28 Identities = 58/112 (51%), Positives = 75/112 (66%) Frame = +1
Query: 61 ISNSRKCQLINCLDKWACQTISLGFSLLTIGILSGAVWANEARGSYWSWDPKETWALVTR 240 ++ S + + LDKW+ +TISLGF LTIGI++GAVWANEA GSYWSWDPKETWAL+T Sbjct: 230 LAQSARTNFLAQLDKWSSRTISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALITW 289
Query: 241 LVYATYLHTKVDKRKMGEGPATTASMGFFLVWICFXXXXXXXXXXXXXXWLA 396 L++A YLH ++ G+GPA AS+ FF+VWIC+ W A Sbjct: 290 LIFAAYLHLRLIVGVTGKGPACLASLAFFVVWICYLGVNFLGQGLHSYGWFA 341
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