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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK952938
Clone id TST38A01NGRL0015_H05
Library
Length 605
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0015_H05. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CTTCTTCATGAATTTGTCATCTTCACTTCCTCGAGGCGCTGGGCGCTATCCTGGTGCTTA
TGTCTGCTCTTGTTGTGCATGCTGAGCTTCGAGCTGAGAGTCTCGAACCCTGTCCTGCCT
CCTATCGTAAGTCGTATCAACTTGTTGCGATGAGGTATCGCAGCCTCGTGTAGGGCATCA
GCATAGGCGAAGAAGTCAATGAACCTGCTGTCTGAACACGACCTATGCAGGGATACCGTG
GGCGGCGCCTGCTCCAACTCACATCTGCCATGTCCAGCTGCCTGTGTGCTGGACTACTAC
GAAGATGGCTAACAGACTTGTTTACTGGCACTTGTACGGTTACGGACCATTATATAGTGA
TGGTCACGTTGACCGGCCTGGTTAAGGTATAGGAAGAGCCCGAGACTTAGGAAGTGGAAG
CGGAGATGAAGCTGATGAATGCCTCAGATGTCTGCTTCCAGGTGTACTTAGATCTAGCCT
TGAAGGCATGGTTGACTATGTGCTGAAGCGGCTATACTAACAAGGCGTTTATAGTGGACG
TTGGCAACAGTGTATCATGAGATACCTTGTAGTGTATATGTGACACATGACACCAGCTTT
CTTTT
■■Homology search results ■■ -
sp_hit_id P72580
Definition sp|P72580|PREA_SYNY3 Prenyl transferase OS=Synechocystis sp. (strain PCC 6803)
Align length 46
Score (bit) 30.8
E-value 5.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952938|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0015_H05, 5'
         (605 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P72580|PREA_SYNY3 Prenyl transferase OS=Synechocystis sp. (st...    31   5.6  
sp|O50044|KDSA_PEA 2-dehydro-3-deoxyphosphooctonate aldolase OS=...    30   9.5  

>sp|P72580|PREA_SYNY3 Prenyl transferase OS=Synechocystis sp.
           (strain PCC 6803) GN=preA PE=3 SV=2
          Length = 323

 Score = 30.8 bits (68), Expect = 5.6
 Identities = 19/46 (41%), Positives = 25/46 (54%)
 Frame = +2

Query: 380 G*GIGRARDLGSGSGDEADECLRCLLPGVLRSSLEGMVDYVLKRLY 517
           G GI R+R+L +     A + L  L     R SL  +VDYVL RL+
Sbjct: 278 GDGIRRSRELAANQAQLARQHLSVLEMSAPRESLLELVDYVLGRLH 323


>sp|O50044|KDSA_PEA 2-dehydro-3-deoxyphosphooctonate aldolase
           OS=Pisum sativum GN=KDSA PE=2 SV=1
          Length = 290

 Score = 30.0 bits (66), Expect = 9.5
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = -2

Query: 349 WSVTVQVPVNKSVSHLRSSPAHRQLDMADVSWSRRRPRYPCIGRVQTA 206
           W      PV   ++H    PA ++LD   V+    R   PCI R   A
Sbjct: 184 WMREANCPVVADITHSLQQPAGKKLDGGGVASGGLRELIPCIARTSVA 231
tr_hit_id A9TB35
Definition tr|A9TB35|A9TB35_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 46
Score (bit) 48.1
E-value 0.0004
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952938|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0015_H05, 5'
         (605 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TB35|A9TB35_PHYPA Predicted protein OS=Physcomitrella paten...    48   4e-04
tr|A9S7J9|A9S7J9_PHYPA Predicted protein OS=Physcomitrella paten...    46   0.002
tr|B1XPV9|B1XPV9_SYNP2 Solanesyl diphosphate synthase OS=Synecho...    39   0.31 
tr|B1WRG4|B1WRG4_CYAA5 Solanesyl diphosphate synthase OS=Cyanoth...    38   0.40 
tr|Q8M6Z9|Q8M6Z9_PFIPI Cytochrome c oxidase subunit 1 (Fragment)...    37   0.68 
tr|Q8M258|Q8M258_PFIPI Cytochrome c oxidase subunit 1 (Fragment)...    37   0.68 
tr|Q0WMS5|Q0WMS5_ARATH Polyprenyl diphosphate synthase OS=Arabid...    37   0.68 
tr|Q4C6E7|Q4C6E7_CROWT Trans-hexaprenyltranstransferase OS=Croco...    37   0.89 
tr|B4FUE4|B4FUE4_MAIZE Putative uncharacterized protein OS=Zea m...    37   0.89 
tr|B4FAH8|B4FAH8_MAIZE Putative uncharacterized protein OS=Zea m...    37   0.89 
tr|A0SVP1|A0SVP1_9DINO Cytochrome c oxidase subunit 1 (Fragment)...    37   0.89 
tr|A8HRQ4|A8HRQ4_CHLRE Solanesyl diphosphate synthase OS=Chlamyd...    37   1.2  
tr|A0SVP9|A0SVP9_9DINO Cytochrome c oxidase subunit 1 (Fragment)...    37   1.2  
tr|A0SVP8|A0SVP8_9DINO Cytochrome c oxidase subunit 1 (Fragment)...    37   1.2  
tr|A3IM28|A3IM28_9CHRO Polyprenyl synthetase OS=Cyanothece sp. C...    36   1.5  
tr|Q75HZ9|Q75HZ9_ORYSJ Os05g0582300 protein OS=Oryza sativa subs...    36   1.5  
tr|B8AX64|B8AX64_ORYSI Putative uncharacterized protein OS=Oryza...    36   1.5  
tr|B3IWQ9|B3IWQ9_ALECA Cytochrome c oxidase subunit 1 (Fragment)...    36   1.5  
tr|A5YBI7|A5YBI7_9DINO Cytochrome c oxidase subunit 1 (Fragment)...    36   1.5  
tr|A3B775|A3B775_ORYSJ Putative uncharacterized protein OS=Oryza...    36   1.5  
tr|A0SVP5|A0SVP5_PRORT Cytochrome c oxidase subunit 1 (Fragment)...    36   1.5  
tr|A0SVN2|A0SVN2_9DINO Cytochrome c oxidase subunit 1 (Fragment)...    36   1.5  
tr|A0SVM8|A0SVM8_9DINO Cytochrome c oxidase subunit 1 (Fragment)...    36   1.5  
tr|A0SVM3|A0SVM3_ALETA Cytochrome c oxidase subunit 1 (Fragment)...    36   1.5  
tr|B7K7A7|B7K7A7_9CHRO Solanesyl diphosphate synthase OS=Cyanoth...    35   2.6  
tr|Q00TD7|Q00TD7_OSTTA Putative polyprenyl diphosphate synthase ...    35   2.6  
tr|B7JU92|B7JU92_SYNP8 Solanesyl diphosphate synthase OS=Synecho...    35   3.4  
tr|B4BXC3|B4BXC3_9CHRO Solanesyl diphosphate synthase OS=Cyanoth...    35   3.4  
tr|Q9SYN0|Q9SYN0_ARATH T30F21.15 protein OS=Arabidopsis thaliana...    35   3.4  
tr|Q8S948|Q8S948_ARATH Solanesyl diphosphate synthase (At1g78510...    35   3.4  

>tr|A9TB35|A9TB35_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_142892 PE=3 SV=1
          Length = 344

 Score = 48.1 bits (113), Expect = 4e-04
 Identities = 26/46 (56%), Positives = 29/46 (63%)
 Frame = +2

Query: 380 G*GIGRARDLGSGSGDEADECLRCLLPGVLRSSLEGMVDYVLKRLY 517
           G GI RAR L    GD A + L CL  G  R SLE MVDYVL+R+Y
Sbjct: 299 GGGIDRARTLAKEQGDLAKKSLECLPQGDTRRSLERMVDYVLERIY 344


>tr|A9S7J9|A9S7J9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_125303 PE=3 SV=1
          Length = 356

 Score = 45.8 bits (107), Expect = 0.002
 Identities = 25/46 (54%), Positives = 29/46 (63%)
 Frame = +2

Query: 380 G*GIGRARDLGSGSGDEADECLRCLLPGVLRSSLEGMVDYVLKRLY 517
           G GI RAR L    G+ A + L CL  G  R SLE MVDYVL+R+Y
Sbjct: 311 GGGIDRARALAQEQGNLAKKSLECLPQGDTRRSLEKMVDYVLERIY 356


>tr|B1XPV9|B1XPV9_SYNP2 Solanesyl diphosphate synthase
           OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 /
           PR-6) GN=sdsA PE=4 SV=1
          Length = 323

 Score = 38.5 bits (88), Expect = 0.31
 Identities = 18/44 (40%), Positives = 26/44 (59%)
 Frame = +2

Query: 386 GIGRARDLGSGSGDEADECLRCLLPGVLRSSLEGMVDYVLKRLY 517
           GI RA++L +  G  A   L CL P   + +L  ++DYVL R+Y
Sbjct: 280 GISRAKELAAHHGQLARHSLECLDPSPSKDALTDLIDYVLGRMY 323


>tr|B1WRG4|B1WRG4_CYAA5 Solanesyl diphosphate synthase OS=Cyanothece
           (strain ATCC 51142) GN=sds PE=4 SV=1
          Length = 327

 Score = 38.1 bits (87), Expect = 0.40
 Identities = 21/44 (47%), Positives = 25/44 (56%)
 Frame = +2

Query: 386 GIGRARDLGSGSGDEADECLRCLLPGVLRSSLEGMVDYVLKRLY 517
           GI R+R+L S     A + L CL P     SL  +VDYVL RLY
Sbjct: 284 GIARSRELASYHAQLALKQLDCLKPSQYSQSLTDLVDYVLSRLY 327


>tr|Q8M6Z9|Q8M6Z9_PFIPI Cytochrome c oxidase subunit 1 (Fragment)
           OS=Pfiesteria piscicida GN=cox1 PE=3 SV=2
          Length = 446

 Score = 37.4 bits (85), Expect = 0.68
 Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
 Frame = +3

Query: 12  ICHLHFLEALGAILVLMSALVVHAE--LRAESLEPCPASYRKSYQLV 146
           + H HF+ +LGA++ ++S ++ + E  L ++SL P P+S    Y LV
Sbjct: 363 VAHFHFVLSLGAVIAILSGVIFNGEKILGSKSLLPSPSSRNSLYHLV 409


>tr|Q8M258|Q8M258_PFIPI Cytochrome c oxidase subunit 1 (Fragment)
           OS=Pfiesteria piscicida GN=cox1 PE=2 SV=1
          Length = 482

 Score = 37.4 bits (85), Expect = 0.68
 Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
 Frame = +3

Query: 12  ICHLHFLEALGAILVLMSALVVHAE--LRAESLEPCPASYRKSYQLV 146
           + H HF+ +LGA++ ++S ++ + E  L ++SL P P+S    Y LV
Sbjct: 378 VAHFHFVLSLGAVIAILSGVIFNGEKILGSKSLLPSPSSRNSLYHLV 424


>tr|Q0WMS5|Q0WMS5_ARATH Polyprenyl diphosphate synthase
           OS=Arabidopsis thaliana GN=At1g78510 PE=2 SV=1
          Length = 406

 Score = 37.4 bits (85), Expect = 0.68
 Identities = 21/45 (46%), Positives = 29/45 (64%)
 Frame = +2

Query: 380 G*GIGRARDLGSGSGDEADECLRCLLPGVLRSSLEGMVDYVLKRL 514
           G GI RA++L     D+A + L+CL  G  RS+LE MV Y L+R+
Sbjct: 361 GGGIKRAQELAREKADDAIKNLQCLPRGGFRSALEDMVLYNLERI 405


>tr|Q4C6E7|Q4C6E7_CROWT Trans-hexaprenyltranstransferase
           OS=Crocosphaera watsonii GN=CwatDRAFT_5051 PE=3 SV=1
          Length = 323

 Score = 37.0 bits (84), Expect = 0.89
 Identities = 20/44 (45%), Positives = 26/44 (59%)
 Frame = +2

Query: 386 GIGRARDLGSGSGDEADECLRCLLPGVLRSSLEGMVDYVLKRLY 517
           GI R+++L +  G  A + L CL P     SL  +VDYVL RLY
Sbjct: 280 GIERSQELAAYHGQLALKQLACLKPSPYSQSLTDIVDYVLSRLY 323


>tr|B4FUE4|B4FUE4_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 424

 Score = 37.0 bits (84), Expect = 0.89
 Identities = 23/49 (46%), Positives = 30/49 (61%)
 Frame = +2

Query: 368 VDRPG*GIGRARDLGSGSGDEADECLRCLLPGVLRSSLEGMVDYVLKRL 514
           V R G GI RA +L    GD A + L+CL     RS+LE MV+Y L+R+
Sbjct: 376 VHRSG-GIRRAHELAREKGDLAIQNLQCLPRSDFRSALEKMVEYNLERI 423


>tr|B4FAH8|B4FAH8_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 245

 Score = 37.0 bits (84), Expect = 0.89
 Identities = 23/49 (46%), Positives = 30/49 (61%)
 Frame = +2

Query: 368 VDRPG*GIGRARDLGSGSGDEADECLRCLLPGVLRSSLEGMVDYVLKRL 514
           V R G GI RA +L    GD A + L+CL     RS+LE MV+Y L+R+
Sbjct: 197 VHRSG-GIRRAHELAREKGDLAIQNLQCLPRSDFRSALEKMVEYNLERI 244