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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK952941
Clone id TST38A01NGRL0015_H08
Library
Length 666
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0015_H08. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
AAATTTAGTGCCCACAACATGAGGAAGGATGAAGCAGGGCATTAGAGAAAGTCCAGGATA
ACCCAAAATACTAAGCTACTTCAGAAATCTTAGTGTTAACCTTACTTTTAGGTCAGCTCT
TGCAAGAAACAGGCAGCCTTTGCAAATAAATTTAACCTTGCTAAAGTTGCTGCTAATCAC
TACCCAAATTTTGTGATTCTAAGTAAGAGTGCACTCCAACAGCTAGACAGAAATTTTCAA
AGTAGTGTGAGCAAGTATGATAGATGGATGCCCCGATGGATGGGCGGGCGGAATCCCGGT
CTGCGTCCTCTCCGGCTCTGCCCAGCAGGACAACACCAATGTTTGTGCATCAGCTAGAGC
TGCTGGTAAAGATGGAACTTTAGTGAAAGAGAGAGACTACATCAGCCTCGGGCTGACGGG
CGCAGCACCAGAACAAATGCTTACAAGTTCCATCCCTTCTGGTGTTGATAAAATGGAGTG
TGATAATGTGGTGCTAAGCCTTGGCTTAGGCCCCCCTGCAGATAAAGCAGCAGCTGCTTC
CCAAGAGCAGAACACCGGCATTGTTGACCAGCAAATTAGGCTCAAGGTCGCTATGACTAG
CGCAAAACCGCAGCACTTTTGGCATGAAAGCTTCCGCGTGAGCCTCAGCAATGATCAATA
TCATCA
■■Homology search results ■■ -
sp_hit_id Q54Z69
Definition sp|Q54Z69|RL4_DICDI 60S ribosomal protein L4 OS=Dictyostelium discoideum
Align length 56
Score (bit) 32.3
E-value 2.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952941|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0015_H08, 5'
         (666 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q54Z69|RL4_DICDI 60S ribosomal protein L4 OS=Dictyostelium di...    32   2.3  
sp|Q9D6Z1|NOL5A_MOUSE Nucleolar protein 5A OS=Mus musculus GN=No...    32   2.3  
sp|Q95K50|NOL5A_MACFA Nucleolar protein 5A OS=Macaca fasciculari...    32   2.3  
sp|O00567|NOL5A_HUMAN Nucleolar protein 5A OS=Homo sapiens GN=NO...    32   2.3  
sp|Q3SZ63|NOL5A_BOVIN Nucleolar protein 5A OS=Bos taurus GN=NOL5...    32   2.3  
sp|Q8PCJ8|DDLB_XANCP D-alanine--D-alanine ligase B OS=Xanthomona...    31   6.7  
sp|P55200|HRX_MOUSE Histone-lysine N-methyltransferase HRX OS=Mu...    30   8.8  

>sp|Q54Z69|RL4_DICDI 60S ribosomal protein L4 OS=Dictyostelium
           discoideum GN=rpl4 PE=3 SV=1
          Length = 369

 Score = 32.3 bits (72), Expect = 2.3
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
 Frame = +1

Query: 130 QAAFANKFNLAKVA-ANHYPNFVILSKSALQQLDRNF----QSSVSKYDRWMPRWM 282
           + A  ++ NL K+A   H   F+I +KSA +QLD  F    +SS  K    +PR M
Sbjct: 227 EVANVSRLNLLKLAPGGHLGRFIIWTKSAFEQLDSTFGTFAKSSAQKKGYTLPRPM 282


>sp|Q9D6Z1|NOL5A_MOUSE Nucleolar protein 5A OS=Mus musculus GN=Nol5a
           PE=1 SV=2
          Length = 580

 Score = 32.3 bits (72), Expect = 2.3
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +1

Query: 112 VSSCKKQAAFANKFNLAKVA--ANHYPNFVILSKSALQQLDRNFQSSVSKYDRW 267
           +S+CK Q    + ++ AKV    N   N +I S S L QLD++  +   +   W
Sbjct: 139 LSACKAQLGLGHSYSRAKVKFNVNRVDNMIIQSISLLDQLDKDINTFSMRVREW 192


>sp|Q95K50|NOL5A_MACFA Nucleolar protein 5A OS=Macaca fascicularis
           GN=NOL5A PE=2 SV=1
          Length = 594

 Score = 32.3 bits (72), Expect = 2.3
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +1

Query: 112 VSSCKKQAAFANKFNLAKVA--ANHYPNFVILSKSALQQLDRNFQSSVSKYDRW 267
           +S+CK Q    + ++ AKV    N   N +I S S L QLD++  +   +   W
Sbjct: 139 LSACKAQLGLGHSYSRAKVKFNVNRVDNMIIQSISLLDQLDKDINTFSMRVREW 192


>sp|O00567|NOL5A_HUMAN Nucleolar protein 5A OS=Homo sapiens GN=NOL5A
           PE=1 SV=4
          Length = 594

 Score = 32.3 bits (72), Expect = 2.3
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +1

Query: 112 VSSCKKQAAFANKFNLAKVA--ANHYPNFVILSKSALQQLDRNFQSSVSKYDRW 267
           +S+CK Q    + ++ AKV    N   N +I S S L QLD++  +   +   W
Sbjct: 139 LSACKAQLGLGHSYSRAKVKFNVNRVDNMIIQSISLLDQLDKDINTFSMRVREW 192


>sp|Q3SZ63|NOL5A_BOVIN Nucleolar protein 5A OS=Bos taurus GN=NOL5A
           PE=2 SV=1
          Length = 596

 Score = 32.3 bits (72), Expect = 2.3
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +1

Query: 112 VSSCKKQAAFANKFNLAKVA--ANHYPNFVILSKSALQQLDRNFQSSVSKYDRW 267
           +S+CK Q    + ++ AKV    N   N +I S S L QLD++  +   +   W
Sbjct: 139 LSACKAQLGLGHSYSRAKVKFNVNRVDNMIIQSISLLDQLDKDINTFSMRVREW 192


>sp|Q8PCJ8|DDLB_XANCP D-alanine--D-alanine ligase B OS=Xanthomonas
           campestris pv. campestris GN=ddlB PE=3 SV=1
          Length = 318

 Score = 30.8 bits (68), Expect = 6.7
 Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 3/135 (2%)
 Frame = +2

Query: 209 VHSNS*TEIFKVV*ASMIDGCPDGWAGGIPVCVLSGSAQQDNT--NVCASARAAGKDGTL 382
           V  NS + +   + A  +D  P     GIP    +  AQ+ +   NV       G+DG +
Sbjct: 32  VSLNSGSNVLDALRARGVDAQP---VDGIPALAQALVAQRFDRVFNVLHGHNGGGEDGIV 88

Query: 383 VKERDYISLGLTGAAPEQMLTSSIPSGVDKMECDNVVLSLGLGPPA-DKAAAASQEQNTG 559
               +   +  TG+    +L S++   +DK+    V LSLGL  P   + AA +  Q   
Sbjct: 89  QGLMEAFGVPYTGS---NVLGSAL--SMDKIRTKQVWLSLGLSTPRYARLAAGASAQQIH 143

Query: 560 IVDQQIRLKVAMTSA 604
              +QI L V +  A
Sbjct: 144 AAAEQIGLPVIVKPA 158


>sp|P55200|HRX_MOUSE Histone-lysine N-methyltransferase HRX OS=Mus
            musculus GN=Mll PE=2 SV=2
          Length = 3966

 Score = 30.4 bits (67), Expect = 8.8
 Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 1/104 (0%)
 Frame = +2

Query: 251  ASMIDGCPDGWAGGIPVCVLSGSAQQDNTNVCASARAAGKDGTLVKERDYISLGLTGAAP 430
            AS I   P     G+      G A++       +   AGK GTL  +RD       G  P
Sbjct: 3420 ASSICVLPSSQTAGMTAASPPGEAEEHYKLQRGNQLLAGKTGTLTSQRDRDPDSAPGTQP 3479

Query: 431  EQML-TSSIPSGVDKMECDNVVLSLGLGPPADKAAAASQEQNTG 559
                 T+  P+GV ++E +  + S      A   ++ S  Q +G
Sbjct: 3480 SNFTQTAEAPNGV-RLEQNKTLPSAKPASSASPGSSPSSGQQSG 3522
tr_hit_id A8J5T5
Definition tr|A8J5T5|A8J5T5_CHLRE COP-II coat subunit OS=Chlamydomonas reinhardtii
Align length 104
Score (bit) 38.9
E-value 0.29
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952941|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0015_H08, 5'
         (666 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8J5T5|A8J5T5_CHLRE COP-II coat subunit OS=Chlamydomonas rein...    39   0.29 
tr|A6SWV7|A6SWV7_JANMA Multidrug efflux system transmembrane pro...    37   1.4  
tr|Q39TW1|Q39TW1_GEOMG 4Fe-4S ferredoxin, iron-sulfur binding pr...    35   3.2  
tr|A1R9P9|A1R9P9_ARTAT Nitrite reductase [NAD(P)H], large subuni...    35   3.2  
tr|B1J457|B1J457_PSEPW FAD-dependent pyridine nucleotide-disulph...    35   5.5  
tr|Q1I2R6|Q1I2R6_PSEE4 Rubredoxin-NAD(+) reductase OS=Pseudomona...    34   7.1  
tr|B5E7S9|B5E7S9_GEOBB 4Fe-4S ferredoxin iron-sulfur binding dom...    34   7.1  
tr|Q0YNI7|Q0YNI7_9DELT 4Fe-4S ferredoxin, iron-sulfur binding OS...    34   7.1  
tr|B3JSZ6|B3JSZ6_9DELT 4Fe-4S ferredoxin iron-sulfur binding dom...    34   9.3  

>tr|A8J5T5|A8J5T5_CHLRE COP-II coat subunit OS=Chlamydomonas
           reinhardtii GN=SEC31 PE=4 SV=1
          Length = 1313

 Score = 38.9 bits (89), Expect = 0.29
 Identities = 35/104 (33%), Positives = 43/104 (41%), Gaps = 16/104 (15%)
 Frame = +2

Query: 317 SAQQDNTNVCASARAAGKDGTLVKERDYISL---------GLTGAAPEQMLTSSIPSGVD 469
           SA    T     A AAG D   ++  D +           G   A+P Q+L    P   D
Sbjct: 508 SAAGGPTENGVDAAAAGMDQLNLQNADGVPRLEVPGASVGGAVAASPHQLLAQDDPDFFD 567

Query: 470 KMECDNVVLSLGLGPPADKAAAAS-------QEQNTGIVDQQIR 580
           K+E   VVL  GL P AD AAAA+       Q  N G +D   R
Sbjct: 568 KLEDTEVVLG-GLAPDADVAAAAAGPDLGGVQPLNAGAMDAMAR 610


>tr|A6SWV7|A6SWV7_JANMA Multidrug efflux system transmembrane
           protein OS=Janthinobacterium sp. (strain Marseille)
           (Minibacterium massiliensis) GN=mma_1064 PE=4 SV=1
          Length = 570

 Score = 36.6 bits (83), Expect = 1.4
 Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
 Frame = +2

Query: 311 SGSAQQDNTNV--CASARAAGKDGTLVKERDYISLGLTGAAPEQMLTSSIPSGVDKMECD 484
           SG A+Q  T      + +  GKDG +  E+  + LG+T     Q+L     SG++  E D
Sbjct: 483 SGFAEQSTTRTPRTGTVKVIGKDGNI--EQRKVELGVTNRVQMQVL-----SGLE--EGD 533

Query: 485 NVVLSLGLGPPADKAAAASQEQ 550
            VVL + L P   + AAA+ +Q
Sbjct: 534 TVVLGMKLPPSTKRPAAATNQQ 555


>tr|Q39TW1|Q39TW1_GEOMG 4Fe-4S ferredoxin, iron-sulfur binding
           protein OS=Geobacter metallireducens (strain GS-15 /
           ATCC 53774 / DSM 7210) GN=Gmet_2084 PE=4 SV=1
          Length = 1014

 Score = 35.4 bits (80), Expect = 3.2
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
 Frame = +2

Query: 392 RDYISLGLTGAAPEQMLT--SSIPSGVDKMECDNVVLSLGLGPPADKAAAASQ 544
           R Y+++G    + + +    S++  GV + E D VVLS+GL PP D  A AS+
Sbjct: 325 RSYVTIGREIESTKNVTIRYSTVDDGVKEEEFDMVVLSVGLNPPKDVEALASK 377


>tr|A1R9P9|A1R9P9_ARTAT Nitrite reductase [NAD(P)H], large subunit
           OS=Arthrobacter aurescens (strain TC1) GN=AAur_3265 PE=4
           SV=1
          Length = 826

 Score = 35.4 bits (80), Expect = 3.2
 Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
 Frame = +2

Query: 284 AGGIPVCVLSGSAQQDNTNVCASARAAGKDGTLVKERDYISLGL---TGAAPEQMLTSSI 454
           A G+ V V+       N  +       G DG  +  R   +LG+   TG+    +L S  
Sbjct: 178 ANGLDVAVVHSGGHLMNAQL-------GPDGGAILRRSVEALGIEVHTGSRTTAILGSDQ 230

Query: 455 PSGV-----DKMECDNVVLSLGLGPPADKAAAASQEQNTGI-VDQQIRL 583
            SGV      +++C+ VV++ G+ P  D A  +      GI VD Q+R+
Sbjct: 231 LSGVRLRDDTEIDCNMVVVTAGIRPNVDVAVVSGLAVERGIVVDDQLRV 279


>tr|B1J457|B1J457_PSEPW FAD-dependent pyridine nucleotide-disulphide
           oxidoreductase OS=Pseudomonas putida (strain W619)
           GN=PputW619_0159 PE=4 SV=1
          Length = 382

 Score = 34.7 bits (78), Expect = 5.5
 Identities = 18/35 (51%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
 Frame = +2

Query: 479 CDNVVLSLGLGPPADKAAAASQEQNTG-IVDQQIR 580
           CD VV ++GL P  D AAAA  + N G +VD+Q+R
Sbjct: 230 CDLVVSAIGLRPRTDLAAAAGLQTNRGVVVDRQLR 264


>tr|Q1I2R6|Q1I2R6_PSEE4 Rubredoxin-NAD(+) reductase OS=Pseudomonas
           entomophila (strain L48) GN=rubB PE=4 SV=1
          Length = 382

 Score = 34.3 bits (77), Expect = 7.1
 Identities = 18/35 (51%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
 Frame = +2

Query: 479 CDNVVLSLGLGPPADKAAAASQEQNTG-IVDQQIR 580
           CD VV ++GL P  D AAAA  + N G +VD+Q+R
Sbjct: 230 CDLVVSAIGLRPRTDLAAAAGLQVNRGVVVDRQLR 264


>tr|B5E7S9|B5E7S9_GEOBB 4Fe-4S ferredoxin iron-sulfur binding domain
           protein OS=Geobacter bemidjiensis (strain Bem / ATCC
           BAA-1014 / DSM 16622) GN=Gbem_1447 PE=4 SV=1
          Length = 1012

 Score = 34.3 bits (77), Expect = 7.1
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
 Frame = +2

Query: 392 RDYISLG--LTGAAPEQMLTSSIPSGVDKMECDNVVLSLGLGPPADKAAAASQ 544
           R Y+++G  +  +    +  S++  GV + E D VVLS+GL PP D  A A++
Sbjct: 325 RSYVTVGREIESSKNVTIRYSTVDQGVKEEEFDMVVLSVGLNPPKDVEALATK 377


>tr|Q0YNI7|Q0YNI7_9DELT 4Fe-4S ferredoxin, iron-sulfur binding
           OS=Geobacter sp. FRC-32 GN=GeobDRAFT_3317 PE=4 SV=1
          Length = 1018

 Score = 34.3 bits (77), Expect = 7.1
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +2

Query: 392 RDYISLGLTGAAPEQMLT--SSIPSGVDKMECDNVVLSLGLGPPADKAAAAS 541
           R Y+S+G        +    S+   GV + E D VVLS+GL PPAD    A+
Sbjct: 324 RSYVSIGRENPETRNVSIRYSTFDQGVKEEEFDMVVLSVGLNPPADVQTMAT 375


>tr|B3JSZ6|B3JSZ6_9DELT 4Fe-4S ferredoxin iron-sulfur binding domain
           protein OS=Geobacter sp. M21 GN=GM21DRAFT_0691 PE=4 SV=1
          Length = 1012

 Score = 33.9 bits (76), Expect = 9.3
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = +2

Query: 392 RDYISLG--LTGAAPEQMLTSSIPSGVDKMECDNVVLSLGLGPPADKAAAASQ 544
           R Y+++G  +  +    +  S++  GV + E D VVLS+GL PP D  A A +
Sbjct: 325 RSYVTVGREIESSKNVTIRYSTVDQGVKEEEFDMVVLSVGLNPPKDVEALAEK 377